mlrn (mlrn)


Basic Information

Item Value
gene id mlrn
gene name mlrn
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 36006085 ~ 36011517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160663.2
AGGGCGGTGGTTGAGAGAGAGGGCAGCCTGACTATCCAATTTTTCGCAATTAGCCTCGCAGGTAAACACACAAAACAGCCAAAATGTCGAGCAAAAGGGCCAAGGGAAAGACCACCAAGAAGCGTCCCCAGCGCGCTACCAGCAATGTGTTCGCCATGTTCGACCAGTCTCAGATCCAGGAGTTCAAAGAGGCCTTCAACATGATCGACCAGAACCGCGACGGGTTTGTCGACAAGGAGGACCTGCATGACATGCTTGCCTCACTAGGGAAGAACCCGACTGATGACTACCTGGAGGCTATGATGACTGAAGCGCCTGGGCCCATCAACTTCACCATGTTCCTCACCATGTTTGGAGAGAAGCTCAACGGCACAGATCCTGAGGATGTCATCAGAAACGCTTTTGCCTGCTTCGACGAAGAAGGCACAGGTGTCATCCAGGAGGAATACCTCAGAGAGCTGCTGACCACAATGGGTGACCGCTTCACAGACGAGGAGGTGGACGAGCTCTTCAGGGAGGCACCCATTGACAAAAAGAGCAACTTCAACTATGTGGAGTTCACACGCATCCTAAAACACGGAGCCAAGGACAAGGATGATTAAGGCCACAGCCATGCCAGTCGTATTATGGTTTCTCTCTGACCCCTCTACTCTTTTACCCCCAGCTAGACCATCTTGCTGCATGTCTCAGCTCTAATAAATCCATGTTTAGCAAGGTGAAACAATGGCTTTGACTGTATCTGAGGTCCCATTTCAATACTGACAGATTTGCACATCTGTATTGAGAATTGTAGCGGGTGATGGTGAATTTGCAAAACAATGTACTTGTCTGTGACGTGAAATGGAAAATGCAACTCTGGAAGCAAGCTCCTATGCTACTCAAATGGTCTGGTCTAGCTGAAtttttacattttataataaATATAAGCTTTAAATAAAT

Function

NR:

description
Myosin regulatory light chain 2, smooth muscle isoform

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12757 MYL12; myosin regulatory light chain 12

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160663.2 True 939 mRNA 0.48 4 36006085 36011517

Neighbor

gene id symbol gene type direction distance location
LOC110535625 NA coding upstream 55687 35943714 ~ 35950398 (+)
LOC110535623 LOC106578698 coding upstream 112294 35868265 ~ 35893791 (+)
LOC110535011 NA coding upstream 140002 35720089 ~ 35866083 (+)
adcyap1 LOC100135955 coding upstream 404477 35595222 ~ 35601608 (+)
LOC110535619 NA coding upstream 484502 35514475 ~ 35521583 (+)
LOC110535012 LOC106590147 coding downstream 1129 36012646 ~ 36019822 (+)
LOC110535013 LOC105015730 coding downstream 53695 36065212 ~ 36075733 (+)
LOC110535630 LOC106578722 coding downstream 139563 36151080 ~ 36157644 (+)
LOC110535631 LOC106578690 coding downstream 153272 36164789 ~ 36179098 (+)
LOC110535014 LOC106578720 coding downstream 177907 36189424 ~ 36191073 (+)
G972427 LOC106578695 non-coding upstream 32475 35973031 ~ 35973610 (+)
G972271 NA non-coding upstream 124736 35881083 ~ 35881349 (+)
G972266 NA non-coding upstream 130409 35875476 ~ 35875676 (+)
G972252 NA non-coding upstream 151379 35854401 ~ 35854706 (+)
G972454 NA non-coding downstream 6712 36018229 ~ 36018554 (+)
G972455 LOC108238713 non-coding downstream 14883 36026400 ~ 36026768 (+)
G972458 NA non-coding downstream 18447 36029964 ~ 36030298 (+)
G972460 NA non-coding downstream 20633 36032150 ~ 36032396 (+)
G972462 NA non-coding downstream 24503 36036020 ~ 36036311 (+)
G970489 LOC106578645 other upstream 1483745 34516457 ~ 34522340 (+)
G970283 NA other upstream 1826037 34179703 ~ 34180048 (+)
G970054 LOC106578636 other upstream 1835098 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 2211024 33794375 ~ 33795061 (+)
G969456 LOC106578609 other upstream 2401275 33604513 ~ 33604810 (+)
G972725 NA other downstream 238456 36249973 ~ 36250586 (+)
LOC110535658 NA other downstream 1530579 37542062 ~ 37543202 (+)
G973918 NA other downstream 1639621 37651138 ~ 37679368 (+)
lztfl1 LOC106590188 other downstream 1820004 37813177 ~ 37835340 (+)
LOC110535015 LOC106578726 other downstream 2008932 37866715 ~ 38045713 (+)

Expression


Co-expression Network