XLOC_028380 (dpysl5b)


Basic Information

Item Value
gene id XLOC_028380
gene name dpysl5b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 798696 ~ 815871 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055122
TGCACGCACAACAGAAGGAAAATCATCAAATACGGATGATGTCGGGCGGCGGCTCCTCCATGCGGATCCTCATTAAAGGCGGCCGGGTGGTGAATGATGATGTCACAGAGGAGGCAGATGTTTACCTGGAGAACGGGCGGATCCAGCAGGTGGGGCGGGACCTGATGATCCCGGGCGGAGCAAAGGTGATCGATGCGACTGGAAAACTGGTGATTCCCGGCGGCATCGACAGCAGCGTTCACCTGCACCAGACATTcatgaacgcacacacacaggacGACTTCTACAGCGGCAccaaggcgGCGCTGTTGGGCGGCTCCACGATGTTGATCTCTCATGTTCTCCCGGATCGCGGCGCGTCTCTGCTGGATGCTTTTGAGCAGATGCGCGCTCACGCGGATGCTAAAGCCTGCTGCGATTACGCGCTGCACGTTGGCGTCACCTGGTGGGGGCCGAAGGTGGAGCGGGAGATGGAGGTGCTGGTGGGTGAGCGAGGTGTGAACTCCTTCCAGATGTTTATGGCGTATAAAGACACGATGATGCTGAAGGACTCTGAGCTTTATCAGGCTCTGAACACCTGTAAAAACATTGGCGCCATTGCTCGAATCCACGCAGAGAACGGAGAGCTGGTGCTGGAGGGGGCAAAGGAGGCTCTGGATCTGGGCATCAGTGGTCCTGAAGGGATGGAGATCAGTCGACCGGAGGAGcTGGAAGCAGAGGCCACACATCGAGCCATAACTATCGGCAACAGGGCTCACTGTCCAGTGTATTTAGTGAACGTGTCCAGCATGTCTGCAGCTGATGTCATCGGTGCCGCCCGCATGCAAGgTAGGGTGGTCCAGGCGGAGACGACTGTGGCTCATGCAGTGCTCTCTGGGATGCATTATTATCATCAGGACTGGGCTCACGCCGCTGCTCATGTCATAGCTCCGCCCCTCCGGCTCGACCCCAACACCCCCGACAATCTGATTGGCCTGCTGGGAAACGACATCATTAACGTGGTGGCGTCAGATCATCGCGCATTCAGCACCAAGCAGAAGGCCATGGGCAAAGAAGACTTCACGAAGATCCCTCACGGGGCGCCCGGCGTCGAAGACCGCATGAGCGTCATCTGGGAGAGAGGAGTGGTCAGTGGGAAGATGGATGAGAATCGTTTTGTGGCGGTGACGAGCTCAAACGCTGCTAAAATCTATAACCTCTATCCACGCAAGGGCCGTATAATGCCAGGAGCCGATGCGGATGTGGTTGTGTGGGATCCAGACGCCACACGGACGATTTCAGCAAGCACTCAGGCTCAGGGTGGAGACTTCAACCTGTTTGAGGGCCAGCGGTGTCACGGCGTCCCATTGGTGACCATCAGCCGCGGGCGTCTGGTGTGTGAAAACGGCGTCTTCATGTGTGCTCAGGGATCCGGAAAGTTCTACCCGATGAGAGCATTTCCAGATTTCCTCTATAAGAAGCTGATTCAGAGAGAAAAGACGCTGGCTGTGCGTGGTGTGGATCGAGCTCCATATTCGGGCGACGTCGCCTCCGTTATGAGCTCGATTAGGAAGGAATCGGGCTCTCCAGAGGGTGACGTTCCCATGCGGACCGCCGCCACCGCCGCCAGACACACTGGCATACGAGACCTGCACGAGTCCAGCTTCAGCCTGTCAGGCGCTCAGGTGGACGACCACATTCCCAAAAGGTCCTCAGCCCGAATCCTGGCTCCTCCCGGCGGACGCTCCAGTGGAATCTGGTGAAGATCTGGAGTTGGTCTCAATGGCGACTCCTGTATGTCCCTGTCCTTGTGTGCTTGAAGATACTAAATGTATGAAGTGGAGAAAATCACAATCAGAGTCGCATCCAAAGTGCCAAAAGCTGAAAACTGTGCCACATTACAGCGAGAGAGAGGTAGCAGAGCAGCGTTTGGACACATCTGAAAGGTATCACTATTGCCAAATACGACAGTGTTTCATGTTGCCAACATCACctttaaaagggacctattatgttttatttacaagCTGTAAAGTAAGACTCTGATGTCTCtagtgtgtgaagtttcagctcgaaATAGCCCACtaataatgttttctaactctctgaaactgaccctacTTTAaaactttgatcctaattgtgccattttgggggctgtcgctttaaattcaaatgagattgtggtcTTCTtgaaagagggcggagctacaaatgcctgtgcatcagcatagtgACAGCTTTAAAACTCGACTAATGTTGCCTTTGTGAAAATGTAAAGAAGCTCTAATGGATAGACAGCttcttctcactcagggctgtttatgctaatgagagagagagatgggcactagtgggcggggctttccccctctgatgacacgtagtACAAATGGCGaatatcaatcaaagtgtttctgcagactgttttcatcaagtctgattataaaatatAGGGTTAATTCATgttgaccattagaggctggatatattcacacactgctgggTTTTAACCCCTTATaagagtgatttttgcataataggccccctttaaacttctgtgttattttaatagtaaaattaaaatgtgtccAAGCGTTCTTCAGATGTTTATCCAATCAGTCGGGTCGTTCTTCTCCAGATCACTGTTAATAATGTTTGCCAAAAGAGAGATGAGAGGATGAAAGCAAGTATTGTCTGAGTGATTTAAATCGTGTTTCCATAGTTTCTGAGCCAGTCATATATTTTATTGAAATCCACACACACTGATGTTAGTGATTGTGTTTATAGTGATGAAGCCCTTATATGAAAACAGTGTCTGTGACAGATTTTACATATATGTCTTTTACAcacactcaaatatatatatatagtttgttgtTTGTCTTGATTGTATAGTAATGAAATATCTAAAGTGAttgattttattaatgttaacagGCTGATCTGCGTTTATTCCAACACTAACATATTCCACTTACAAATGAATTATTGCTCAACTACAAATCTATTCGATAAACATTACCACTAAGTTATAAGAGGAGCATTTCAGAATATTCTGAATATAAATAACATTCTGAGAAGGGATAACTTTGAGCAAGTcctctattaatattattacaagaTCATAACGTTAAAACAACCATGTGTGAACGTTCCCTGTTTAATCAGCAGTTTATTGAGCTGCACATGTTCACTGAAACTCAGATTTACGCTCATCTCGTGTGTAGAGTCTCGTTTGTGTTCATTATTATTGGTAAATTGTGTGTTATTGTTCCTGTTTTGTGTCCTGATCCAAGCATGAGCTCCTCCAGTAGGGCTGGTTTTATTGGTGCTGTTTTTTAAATGAGCAGTTGTTCATTGCCGGTCTTGATTTGTATGGTTTTGGTGTTTTTCAGGAAAAACAAAGCACTTTGTGAATCggtttgtatttttgtgttgttggACCTGCTGTTGGAATTAGTCAGTCCTGAAAGTGAAGGCTTGTTTTATCAagtgcaaaaataaaatttaaaaactccTTAAAGAAA
>TCONS_00055123
cTGGAAGCAGAGGCCACACATCGAGCCATAACTATCGGCAACAGGGCTCACTGTCCAGTGTATTTAGTGAACGTGTCCAGCATGTCTGCAGCTGATGTCATCGGTGCCGCCCGCATGCAAGGTCAGTTTATGTATGATCAGAAATGTTTATAGTGCTTATAAACACACTGATGTCGATAACGCAGCGTTTGagtgtctgtctctctgtctgtgtgtgtgtgctccaggTAGGGTGGTCCAGGCGGAGACGACTGTGGCTCATGCAGTGCTCTCTGGGATGCATTATTATCATCAGGACTGGGCTCACGCCGCTGCTCATGTCATAGCTCCGCCCCTCCGGCTCGACCCCAACACCCCCGACAATCTGATTGGCCTGCTGGGAAACGACATCATTAACGTGGTGGCGTCAGATCATCGCGCATTCAGCACCAAGCAGAAGGCCATGGGCAAAGAAGACTTCACGAAGATCCCTCACGGGGCGCCCGGCGTCGAAGACCGCATGAGCGTCATCTGGGAGAGAGGAGTGGTCAGTGGGAAGATGGATGAGAATCGTTTTGTGGCGGTGACGAGCTCAAACGCTGCTAAAATCTATAACCTCTATCCACGCAAGGGCCGTATAATGCCAGGAGCCGATGCGGATGTGGTTGTGTGGGATCCAGACG

Function

symbol description
dpysl5b Predicted to enable hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds and microtubule binding activity. Predicted to act upstream of or within axon guidance. Predicted to be located in cytoplasm. Is expressed in central nervous system and trigeminal ganglion. Orthologous to human DPYSL5 (dihydropyrimidinase like 5).

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0007411 axon guidance biological_process
GO:0005737 cytoplasm cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050720-4 Predicted to enable hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds and microtubule binding activity. Predicted to act upstream of or within axon guidance. Predicted to be located in cytoplasm. Is expressed in central nervous system and trigeminal ganglion. Orthologous to human DPYSL5 (dihydropyrimidinase like 5).

Ensembl:

ensembl_id ENSDARG00000059311

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055122 False 3509 mRNA 0.47 13 798696 815871
TCONS_00055123 True 662 nonsense_mediated_decay 0.54 4 804147 808453

Neighbor

gene id symbol gene type direction distance location
XLOC_028379 mapre3b coding downstream 838 783644 ~ 797858 (-)
XLOC_028378 tmem214 coding downstream 18900 764100 ~ 779796 (-)
XLOC_028377 agbl5 coding downstream 38136 737539 ~ 760560 (-)
XLOC_028375 CU855889.2 coding downstream 64349 701612 ~ 734347 (-)
XLOC_028376 NA coding downstream 66212 723830 ~ 732484 (-)
XLOC_028381 sobpb coding upstream 3057 818928 ~ 858434 (-)
XLOC_028382 crybg1b coding upstream 45573 861444 ~ 890220 (-)
XLOC_028383 NA coding upstream 84091 899962 ~ 904022 (-)
XLOC_028384 mrap2b coding upstream 89612 905483 ~ 908821 (-)
XLOC_028385 NA coding upstream 103881 919752 ~ 921761 (-)
XLOC_028373 NA non-coding downstream 401877 393551 ~ 396819 (-)
XLOC_028362 NA non-coding downstream 679502 116322 ~ 119194 (-)
XLOC_028360 NA non-coding downstream 697319 99991 ~ 101377 (-)
XLOC_028389 NA non-coding upstream 195089 1010960 ~ 1013095 (-)
XLOC_028391 NA non-coding upstream 206445 1022316 ~ 1023700 (-)
XLOC_028392 NA non-coding upstream 212965 1028836 ~ 1036046 (-)

Expression


Co-expression Network