LOC110535012 (LOC106590147)


Basic Information

Item Value
gene id LOC110535012
gene name LOC106590147
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 36012646 ~ 36019822 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110535012
ATGGCTTTAAAGGTGATCCAGAGGCTTCAGTTACTCGGGCAGACAAGGGCACACCTCAGTCCTCCAGGTGGGCTGGGTCGCATCTCCAGACTTCTGTGTGCTCTCGACTCTTTCTACGCCACTGGGTCAGTCGGCCAGCTGCACCGACCCACTGTCGCAGAAGAGAAAGCCTTCCTGGACCGCCTCGGCAGTTGCTCTTCCTCCAGACAGGTCCTGCACTCCTCTGCACTGTGGCGATCACGTCTGACACTATGGCAGCCTTGCACCGCGTGGCTGACCCAGAAGGACCCTTCAGTGTGCTGTGCTGCCAGCTAGAGTAGGCGTCTGAAGGAGACCGGGCTGGTTTCTGCCCTGCTGGCCTGCACATACCTCTACGTGGACCCCTGGAGCAGGCTGGCGGTGAGGCTGGTATCAGAGTGCCAGGAGCGGCTGGATGGGAGCCAGATGAGCGTGGGACAGCTGTGCACTTTTGGCCAGGCACTGTTGGCCCTGGAGGGCCCGGGCTGTGGGATGCTGGAGCAGGTACAGAGGCAGGAGCCAGGCCAGTGGAGCCTAGCAGAGCTCACTGCTGTATACTGACTGCTGCAGgcaggagtaggagaggagggcagCTACCAGGACCTCCTAAACGCTACGCACACTCCTTCTTGGTGGAGGTCATGGAGAGACACGTGCTTTAGATGGCTTTTACTTCCCACCCAGAGACAGTTACCAAGGTGATGCAGTACTCCTCAACCTGCTGCACTCCTACATCCTGGTAGAGAGGTTCCCTGTCAACTTTGTGTCCAAGGTCTTCAACCTCTACTTCCTCCAGAAATTACAAGGGTCCAAGGCTCCTTCCTATGTACCGTGTCAAGTTTTTCCTCACTCCTGGTCGGTCTCTGGAGATGCCGGTTGACGGACACCTCTACAACTATGTGAAAACTGGACTAGTGGATCTACTAGGGGCCCGTGCTTACTTCACTTCCAGAGTTCTCACTCCATACTGCTACACACTAGATGTGGAAATAAAGCTGGATGAGGATGGATATGTATTGCCTGCCAGTGACATCGACGATATCTTCAAGAGGATAGCCACAAGAGGTTTACTGTGAACACAAGACAGTTGCTGGGAAAAGAGGCCATGAGGCTTCTGGGATATGAAGTTGTTCAGATTTCTTACTATGAATTTGAGAAGCTTCGGAACAAGACAGAGGTTGTTGAACATCTTCACAAGAATATCTTTCCCCTCAGCTACAGGTTCAAAGAAGGCCTTTGTTGCTGTCATACAACTATAACACTGTGCGCTATACAGTTTGGGCACTGTTTTTCTCATCTCAAAGTGCCACATTGTCCAACATTTCTACCTGAAGAGAAAGCAGAAAGTCAAGAAATCATGTATTTATAGCTTTTGAGTAATTGTAATTCTACACACTACTAGTGTTCTATTGTATAGTGAAATTACTTATTTAGTCTTCTCTATAATCCACCATGATGGACCACCACAATTTGAAATATATAATACATGTATATTTATTGGTAGTTGGCAATACAGTGCTGCAGTAGAAAGTTAGAACATCTAAATACCAAGAATCACCTTGGAGGGGGAAAAAAGTACATGTGTTCATACAAAGAACAATAATTTTGAACATAGCCAAGCATCACTATCAATTTttgatttatatttttgacattatCAGTTATTCAATCAAGGTAACCTAATTAAGGCAAGTTGTTTTTCTCTGTCCACCACCATGCAATGCATGTCAGtcggatatacactgagtatacaaagcaGCCTCTTTCATGGTGAAtccagggaggagaca

Function

NR:

description
PREDICTED: FAST kinase domain-containing protein 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110535012 True 1808 mRNA 0.48 6 36012646 36019822

Neighbor

gene id symbol gene type direction distance location
mlrn mlrn coding upstream 1129 36006085 ~ 36011517 (+)
LOC110535625 NA coding upstream 62248 35943714 ~ 35950398 (+)
LOC110535623 LOC106578698 coding upstream 118855 35868265 ~ 35893791 (+)
LOC110535011 NA coding upstream 146563 35720089 ~ 35866083 (+)
adcyap1 LOC100135955 coding upstream 411038 35595222 ~ 35601608 (+)
LOC110535013 LOC105015730 coding downstream 45390 36065212 ~ 36075733 (+)
LOC110535630 LOC106578722 coding downstream 131258 36151080 ~ 36157644 (+)
LOC110535631 LOC106578690 coding downstream 144967 36164789 ~ 36179098 (+)
LOC110535014 LOC106578720 coding downstream 169602 36189424 ~ 36191073 (+)
sox17 LOC106578689 coding downstream 211293 36231115 ~ 36233394 (+)
G972427 LOC106578695 non-coding upstream 39036 35973031 ~ 35973610 (+)
G972271 NA non-coding upstream 131297 35881083 ~ 35881349 (+)
G972266 NA non-coding upstream 136970 35875476 ~ 35875676 (+)
G972252 NA non-coding upstream 157940 35854401 ~ 35854706 (+)
G972455 LOC108238713 non-coding downstream 6578 36026400 ~ 36026768 (+)
G972458 NA non-coding downstream 10142 36029964 ~ 36030298 (+)
G972460 NA non-coding downstream 12328 36032150 ~ 36032396 (+)
G972462 NA non-coding downstream 16198 36036020 ~ 36036311 (+)
G972637 NA non-coding downstream 106256 36126078 ~ 36126302 (+)
G970489 LOC106578645 other upstream 1490306 34516457 ~ 34522340 (+)
G970283 NA other upstream 1832598 34179703 ~ 34180048 (+)
G970054 LOC106578636 other upstream 1841659 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 2217585 33794375 ~ 33795061 (+)
G969456 LOC106578609 other upstream 2407836 33604513 ~ 33604810 (+)
G972725 NA other downstream 230151 36249973 ~ 36250586 (+)
LOC110535658 NA other downstream 1522274 37542062 ~ 37543202 (+)
G973918 NA other downstream 1631316 37651138 ~ 37679368 (+)
lztfl1 LOC106590188 other downstream 1811699 37813177 ~ 37835340 (+)
LOC110535015 LOC106578726 other downstream 2000627 37866715 ~ 38045713 (+)

Expression


Co-expression Network