LOC110535013 (LOC105015730)


Basic Information

Item Value
gene id LOC110535013
gene name LOC105015730
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 36065212 ~ 36075733 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110535013
ATGACGTATGTGCATTTGACCTGAGACACCATCTTCATCCAACACAACGGACTCATCAAGATAGTATCAGTGGCTCCAGACACCATCAACAACCGTGTGAAGACCTGCAGAAAGGAACAGAAAAACCTGTACTTCTTCACCCCTGAATATGGAACTGTTGTAGATGTCACCACTGCAATGGATATCTACTCCTTTGGGATGTGTGCCTTGGAGATGGCAGTGTTGGAGATCCAGGGAAATTGAGAATCTTCCCATTTCAGGAGGGCATCAACAACGTCATATAGTCACTGGAAGATCCCCCTACAGAGGGAGTTTATTCAGACGTTTCTGGAGGCTGACCTGTTTAAGAGGCCTACAGCCAGAGAGCTGCTTTTCCACCAGGCTCTGTTTTAGGTGCCCTTGTTGAAGCTGCTAGCTGCACACTGCATCGTTAGCCACCAGCATATGATCCCTGAGAATGCCTTAGAGGAGAACACTAAGAACATGGACCCCAACCTCATCATCGCTGAGATAAAGGCAGGCGTGCAGGGCAAGCTGTTTCAGTATCCTGACTTGGAACTGGAGAAGTTCTTGGAGGATGTCGGGAATGGTATCTACAACCTAGCGTTTGGGCTGCCCTTTCGCCCATTGTCACCACCTCTGTCAAATCCCCCACCCCAGAACCCGCAGAATCAACATTTCTGGCTAAACTACGGACATACAAGGTTGTTCAGATGCAGTGTAATATTGAACCGGTGGAGGAGAGTGCAAAACATTATCTGACACTACTGTGGAAGCTGGAGGACAAACTGAACAGACACCTGCActGTGATTTGTTAGCCAATGAAAATGTACAGGAACTGTCTGTTGAGCTTGCTTCATCAGCAAGGTGGGCCAGAGCAGGATGTACTAGAAGAGGCCTTCACCAAGTTCTTCAGCAGGAACGGTTCCCTCAACCCTGCCACTGTGCCTTTACAGGGCTGCCAAGGCTccacctggcgtcctacctgggcACATACTTGGTTGACCGGGGTGTCGGTGGTGGAAGTCGGCGATGAGGCCTGGATCCAGGATGTCTCTAGGGGAACTGAGCACCTCTCCTCTGGGCCATAg

Function

NR:

description
PREDICTED: nuclear receptor-binding protein-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110535013 True 1092 mRNA 0.50 5 36065212 36075733

Neighbor

gene id symbol gene type direction distance location
LOC110535012 LOC106590147 coding upstream 45390 36012646 ~ 36019822 (+)
mlrn mlrn coding upstream 53695 36006085 ~ 36011517 (+)
LOC110535625 NA coding upstream 114814 35943714 ~ 35950398 (+)
LOC110535623 LOC106578698 coding upstream 171421 35868265 ~ 35893791 (+)
LOC110535011 NA coding upstream 199129 35720089 ~ 35866083 (+)
LOC110535630 LOC106578722 coding downstream 75347 36151080 ~ 36157644 (+)
LOC110535631 LOC106578690 coding downstream 89056 36164789 ~ 36179098 (+)
LOC110535014 LOC106578720 coding downstream 113691 36189424 ~ 36191073 (+)
sox17 LOC106578689 coding downstream 155382 36231115 ~ 36233394 (+)
LOC110535634 LOC106578686 coding downstream 179490 36255223 ~ 36266074 (+)
G972462 NA non-coding upstream 28901 36036020 ~ 36036311 (+)
G972460 NA non-coding upstream 32816 36032150 ~ 36032396 (+)
G972458 NA non-coding upstream 34914 36029964 ~ 36030298 (+)
G972455 LOC108238713 non-coding upstream 38444 36026400 ~ 36026768 (+)
G972454 NA non-coding upstream 46658 36018229 ~ 36018554 (+)
G972637 NA non-coding downstream 50345 36126078 ~ 36126302 (+)
G972644 NA non-coding downstream 54708 36130441 ~ 36130659 (+)
G972671 NA non-coding downstream 74115 36149848 ~ 36150047 (+)
G972662 NA non-coding downstream 82080 36157813 ~ 36158831 (+)
G972663 NA non-coding downstream 83265 36158998 ~ 36159369 (+)
G970489 LOC106578645 other upstream 1542872 34516457 ~ 34522340 (+)
G970283 NA other upstream 1885164 34179703 ~ 34180048 (+)
G970054 LOC106578636 other upstream 1894225 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 2270151 33794375 ~ 33795061 (+)
G969456 LOC106578609 other upstream 2460402 33604513 ~ 33604810 (+)
G972725 NA other downstream 174240 36249973 ~ 36250586 (+)
LOC110535658 NA other downstream 1466363 37542062 ~ 37543202 (+)
G973918 NA other downstream 1575405 37651138 ~ 37679368 (+)
lztfl1 LOC106590188 other downstream 1755788 37813177 ~ 37835340 (+)
LOC110535015 LOC106578726 other downstream 1944716 37866715 ~ 38045713 (+)

Expression


Co-expression Network