LOC110535630 (LOC106578722)


Basic Information

Item Value
gene id LOC110535630
gene name LOC106578722
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 36151080 ~ 36157644 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620742.2
CAGAGAAGGCTattgctatttaacgcaacagttttgGAAAATGCGATTGACATTTTATTTGGTACAATGAAAAATTAAACGAAACAAATATTtttgtgtgcactatgtcatcacgcaCTGATTTGTATCTGGAACGAGTCCGTTTGGTGACAACACTAGTGCTGGTTAAATTGCGCATATTTTCTACATGTGGATTTTAGAATATTGTCATGAAAATCTgccgccaattggatggaaacctagctactcaTGGTGGGTGGATCATGTATAGGTTTCATTCAGTGGTTGTGAAGTAGGCTTTGCTACAGATGAGGCTATGAGAGCATCATCAAACATTGCTTGAAGCCTCCAGTAAAAACTGGTCTGCCCTTCAACGATTCAGCTGCAGAACATATTTTTTTGCACTCAAACAAAACGCATGCGCATGGAGCAAACGAATTGCAACACAGTGCAGACGGTTGTGATTGAGGCAAGAATCACCTGTATTCTGGCATTCATGGTGACACAGTGAGTACAGTTACATTGGGATTTCCGCTTTGAAATATAATTGAATGCTAAAATTTGAATTAGATTCAGCAATCTTAATGGAAAATGATGGACAACTAGATAATTATTGCCAGCATGGTTTCTTGACAATCTCGTTCTATCTTTTGGAAATAGCTACCGAATTGAATggtcatgtatttatttattgctgCTGTAGTCATAATTTGCATCAGATCATTAGATGCCATATTCTCCATCTTGAAAGAAAAATACACCTTATGCGTTATTATACTGTCAGCATACAGTATTTCGTTTTAAATATTCTCAATGTTGATTAACCTAATAAATggtcaaaacaaaacaaaagcgcTCTAACCCCAAGTCTCCATCTCTGTTGTATCTGAGGATGCTTGGATGGAGGCAGCAACGCCTCGTCTTTCTCATCCCATGCATTTCTCACCCCAGAGCGCGTTAAAATGATTTGATCCTGCGAATGTTAGGCTTGGTAATAGGCGTTTAATAGCTTAGATATAGCTTATATATGTTTATGTATGTAAATGTCAATGACGGTATTTTTCATAGCCAACTGGTACTACATTTCTCGCTATAATAAATTATCGTTTTGACAGTGAAAATAAGTGATCAGCGATCATTCTGCTCTGTTGAAGTGGTCAGAGCATTCCGCAAGACATGCGCGCTCGAGCTGATGTGACGACATGCCGTGGGGATTCCCTCAGTAGGCTACTATTTTTACGTGGTTTCGAGATGTTGTACAagcagtggcggttctagcttgtatggctccctgggcgaaccaCCCCCCAAAATATGACtcataaatataaaaaataagtatcaaagacaaatagaaacaaatttgtgttgatttggcactcgagcatcaacacattacccatcccccaacactgctAACCAAGAGTCAAAACCaaaccaattcaccttggtggtgtgcagactggtttaATATTATTCTTAACGATTTCGCACAAAacagaaaaaaatgcaacaatatgtctgtgtaactatatattcacagtattatgaatgaattgtggtttatttggtagcatttcgtagtgtgtctgattttactaattgcattagtactgtacaaatttagaggtgcgctatttgataggAGGAGCAGGGGAATCTATCTCCGGCTCCCAGTTGGGAGATCTGAGGTCgcttccctccccatctcctgcttctgagtgggagaccttcccaggcagttgcctgcctagctcacaaactagaatcagggcgcccactccgacaaggttaattgacccacagtcccacacggtgacatgctATCATTGACTTGGCGTGCAAATGAGCGCTAGAAAACCGATCGCGCAATTGTCACCATTCCAAAAAAATGTGTGTGGGCGCCCCGTGCCGCCCCCGGCAAGATGCCGCTCTGGGAggctgcccatgtcgcctatacctaaatccgccactgTGTACAAGTCTTTAAAATTGTATATTTTTCACTCCCTCAATGTCATGTACAAGAAGATATGGAGACAAGTATACGGATGGATGACTGATGCCTGCATTCTATGTGGGAATTATCTGAACCAACTCGAGTGTCCAGGTTGTATAGCCTAACCCATGGGGTCAGAGCGGCTGGAGATGCGCAAGAGACAGATGCAAATGCACCAGGAAGCCGCGGCCAGTGTCCTCCAATCACAGCACAGGATGGGGAACATGCCCACCAACGCCTCCAATGCCTGTTGTTTCTGCTGGTGTTGCTGCTGCAGCTGCTCCTGTCTGACTGTTATGACAGAGGATGAGAGGATTCAAAGAAGCACCTatgagaggagggcagagggaaTTGCAAACTGTGATGACAGCCCCAAGCCTACTCTGGAGGATGTGACAATATGGACCATGTCGTTTGAGAGGCTGATGAAGAGCCCCGCAGGGCGGGGTTGCTTCCGACAGTTCCTAAGGACAGAGTTTAGTGAAGAGAACATGATGTTCTGGTTGGCCTGCGAAGAGCTCAAAAAGGAGACCAACAAAACTGTGGTGGAGGAGAAAGTACGACAGATCTATGAGGACTTCATTTCTATCCTCTCCCCTAAAGAGGTGAGTTTGGACTCACGTGTTCGAGACGTGATCAACAAGAACATGCTGGAGCCCACGTCCCACACGTTTGAGGACGCCCAGCAGCAGATCTACACGCTGATGCAGAGAGACTCATACCCACGCTACATGAACTCGACAGCGTATGCCGAATTACTGCAGGGCCTGGAAGAACCACCACCTGCCACAGAGCCATAGACTTCCATTCTCCGTCAATCACTCTACACATTGCTCTTAGATGACACTTGTGTATCTTAGGTCCAGCTTTCAGTTACAGTTCACATGTTGATTGATCAATAGGCTCTATTTACAAAAATGTCGATATTAAGGTGTAACTACTGTGTGCTACCTTAAATATTGGCTTTCCAAaatcctcaaagcgagcaagaACATACGCTGTATTCCAATTCAGATTTCAAGATGTttccaaatatatttatatttttatattgcCTAGCACTTCACATTGCACTTTTCTATAGTTTTATGAGGGAAAAGCATGTTGTATCTGTTAGCACTGCCTTTGTGTGTAGTTCTATTGTCAGACTTAAATCATTTTCATTTCACTTAATATTAAGAAGACATGGGAAAGTGCCTTGGCATTAGATCGTTTACCACTACACCTTcaacatacagtacctgtcaataGTTtgggaacacctactcattccatggtttttctttaattttactattttctacattgtagaatagtgaagacatcaaaa
>XM_036935362.1
CAGAGAAGGCTattgctatttaacgcaacagttttgGAAAATGCGATTGACATTTTATTTGGTACAATGAAAAATTAAACGAAACAAATATTtttgtgtgcactatgtcatcacgcaCTGATTTGTATCTGGAACGAGTCCGTTTGGTGACAACACTAGTGCTGGTTAAATTGCGCATATTTTCTACATGTGGATTTTAGAATATTGTCATGAAAATCTgccgccaattggatggaaacctagctactcaTGGTGGGTGGATCATGTATAGGTTTCATTCAGTGGTTGTGAAGTAGGCTTTGCTACAGATGAGGCTATGAGAGCATCATCAAACATTGCTTGAAGCCTCCAGTAAAAACTGGTCTGCCCTTCAACGATTCAGCTGCAGAACATATTTTTTTGCACTCAAACAAAACGCATGCGCATGGAGCAAACGAATTGCAACACAGTGCAGACGGTTGTGATTGAGGCAAGAATCACCTGTATTCTGGCATTCATGGTGACACAATATGGAGACAAGTATACGGATGGATGACTGATGCCTGCATTCTATGTGGGAATTATCTGAACCAACTCGAGTGTCCAGGTTGTATAGCCTAACCCATGGGGTCAGAGCGGCTGGAGATGCGCAAGAGACAGATGCAAATGCACCAGGAAGCCGCGGCCAGTGTCCTCCAATCACAGCACAGGATGGGGAACATGCCCACCAACGCCTCCAATGCCTGTTGTTTCTGCTGGTGTTGCTGCTGCAGCTGCTCCTGTCTGACTGTTATGACAGAGGATGAGAGGATTCAAAGAAGCACCTatgagaggagggcagagggaaTTGCAAACTGTGATGACAGCCCCAAGCCTACTCTGGAGGATGTGACAATATGGACCATGTCGTTTGAGAGGCTGATGAAGAGCCCCGCAGGGCGGGGTTGCTTCCGACAGTTCCTAAGGACAGAGTTTAGTGAAGAGAACATGATGTTCTGGTTGGCCTGCGAAGAGCTCAAAAAGGAGACCAACAAAACTGTGGTGGAGGAGAAAGTACGACAGATCTATGAGGACTTCATTTCTATCCTCTCCCCTAAAGAGGTGAGTTTGGACTCACGTGTTCGAGACGTGATCAACAAGAACATGCTGGAGCCCACGTCCCACACGTTTGAGGACGCCCAGCAGCAGATCTACACGCTGATGCAGAGAGACTCATACCCACGCTACATGAACTCGACAGCGTATGCCGAATTACTGCAGGGCCTGGAAGAACCACCACCTGCCACAGAGCCATAGACTTCCATTCTCCGTCAATCACTCTACACATTGCTCTTAGATGACACTTGTGTATCTTAGGTCCAGCTTTCAGTTACAGTTCACATGTTGATTGATCAATAGGCTCTATTTACAAAAATGTCGATATTAAGGTGTAACTACTGTGTGCTACCTTAAATATTGGCTTTCCAAaatcctcaaagcgagcaagaACATACGCTGTATTCCAATTCAGATTTCAAGATGTttccaaatatatttatatttttatattgcCTAGCACTTCACATTGCACTTTTCTATAGTTTTATGAGGGAAAAGCATGTTGTATCTGTTAGCACTGCCTTTGTGTGTAGTTCTATTGTCAGACTTAAATCATTTTCATTTCACTTAATATTAAGAAGACATGGGAAAGTGCCTTGGCATTAGATCGTTTACCACTACACCTTcaacatacagtacctgtcaataGTTtgggaacacctactcattccatggtttttctttaattttactattttctacattgtagaatagtgaagacatcaaaa
>XM_036935363.1
CAGAGAAGGCTattgctatttaacgcaacagttttgGAAAATGCGATTGACATTTTATTTGGTACAATGAAAAATTAAACGAAACAAATATTtttgtgtgcactatgtcatcacgcaCTGATTTGTATCTGGAACGAGTCCGTTTGGTGACAACACTAGTGCTGGTTAAATTGCGCATATTTTCTACATGTGGATTTTAGAATATTGTCATGAAAATCTgccgccaattggatggaaacctagctactcaTGGTGGGTGGATCATGTATAGGTTTCATTCAGTGGTTGTGAAGTAGGCTTTGCTACAGATGAGGCTATGAGAGCATCATCAAACATTGCTTGAAGCCTCCAGTAAAAACTGGTCTGCCCTTCAACGATTCAGCTGCAGAACATATTTTTTTGCACTCAAACAAAACGCATGCGCATGGAGCAAACGAATTGCAACACAGTGCAGACGGTTGTGATTGAGGCAAGAATCACCTGTATTCTGGCATTCATGGTGACACACCCATGGGGTCAGAGCGGCTGGAGATGCGCAAGAGACAGATGCAAATGCACCAGGAAGCCGCGGCCAGTGTCCTCCAATCACAGCACAGGATGGGGAACATGCCCACCAACGCCTCCAATGCCTGTTGTTTCTGCTGGTGTTGCTGCTGCAGCTGCTCCTGTCTGACTGTTATGACAGAGGATGAGAGGATTCAAAGAAGCACCTatgagaggagggcagagggaaTTGCAAACTGTGATGACAGCCCCAAGCCTACTCTGGAGGATGTGACAATATGGACCATGTCGTTTGAGAGGCTGATGAAGAGCCCCGCAGGGCGGGGTTGCTTCCGACAGTTCCTAAGGACAGAGTTTAGTGAAGAGAACATGATGTTCTGGTTGGCCTGCGAAGAGCTCAAAAAGGAGACCAACAAAACTGTGGTGGAGGAGAAAGTACGACAGATCTATGAGGACTTCATTTCTATCCTCTCCCCTAAAGAGGTGAGTTTGGACTCACGTGTTCGAGACGTGATCAACAAGAACATGCTGGAGCCCACGTCCCACACGTTTGAGGACGCCCAGCAGCAGATCTACACGCTGATGCAGAGAGACTCATACCCACGCTACATGAACTCGACAGCGTATGCCGAATTACTGCAGGGCCTGGAAGAACCACCACCTGCCACAGAGCCATAGACTTCCATTCTCCGTCAATCACTCTACACATTGCTCTTAGATGACACTTGTGTATCTTAGGTCCAGCTTTCAGTTACAGTTCACATGTTGATTGATCAATAGGCTCTATTTACAAAAATGTCGATATTAAGGTGTAACTACTGTGTGCTACCTTAAATATTGGCTTTCCAAaatcctcaaagcgagcaagaACATACGCTGTATTCCAATTCAGATTTCAAGATGTttccaaatatatttatatttttatattgcCTAGCACTTCACATTGCACTTTTCTATAGTTTTATGAGGGAAAAGCATGTTGTATCTGTTAGCACTGCCTTTGTGTGTAGTTCTATTGTCAGACTTAAATCATTTTCATTTCACTTAATATTAAGAAGACATGGGAAAGTGCCTTGGCATTAGATCGTTTACCACTACACCTTcaacatacagtacctgtcaataGTTtgggaacacctactcattccatggtttttctttaattttactattttctacattgtagaatagtgaagacatcaaaa

Function

NR:

description
regulator of G-protein signaling 20-like

GO: NA

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620742.2 False 3329 mRNA 0.43 5 36151080 36157644
XM_036935362.1 False 1805 mRNA 0.44 6 36151080 36157644
XM_036935363.1 True 1712 mRNA 0.44 5 36151080 36157644

Neighbor

gene id symbol gene type direction distance location
LOC110535013 LOC105015730 coding upstream 75347 36065212 ~ 36075733 (+)
LOC110535012 LOC106590147 coding upstream 131258 36012646 ~ 36019822 (+)
mlrn mlrn coding upstream 139563 36006085 ~ 36011517 (+)
LOC110535625 NA coding upstream 200682 35943714 ~ 35950398 (+)
LOC110535623 LOC106578698 coding upstream 257289 35868265 ~ 35893791 (+)
LOC110535631 LOC106578690 coding downstream 7145 36164789 ~ 36179098 (+)
LOC110535014 LOC106578720 coding downstream 31780 36189424 ~ 36191073 (+)
sox17 LOC106578689 coding downstream 73471 36231115 ~ 36233394 (+)
LOC110535634 LOC106578686 coding downstream 97579 36255223 ~ 36266074 (+)
LOC110535637 LOC106578684 coding downstream 187082 36344726 ~ 36461901 (+)
G972671 NA non-coding upstream 1033 36149848 ~ 36150047 (+)
G972644 NA non-coding upstream 20421 36130441 ~ 36130659 (+)
G972637 NA non-coding upstream 24778 36126078 ~ 36126302 (+)
G972462 NA non-coding upstream 114769 36036020 ~ 36036311 (+)
G972460 NA non-coding upstream 118684 36032150 ~ 36032396 (+)
G972662 NA non-coding downstream 169 36157813 ~ 36158831 (+)
G972663 NA non-coding downstream 1354 36158998 ~ 36159369 (+)
G972688 NA non-coding downstream 23787 36181431 ~ 36181849 (+)
G972687 NA non-coding downstream 24431 36182075 ~ 36182289 (+)
G972698 NA non-coding downstream 37137 36194781 ~ 36195062 (+)
G970489 LOC106578645 other upstream 1628740 34516457 ~ 34522340 (+)
G970283 NA other upstream 1971032 34179703 ~ 34180048 (+)
G970054 LOC106578636 other upstream 1980093 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 2356019 33794375 ~ 33795061 (+)
G969456 LOC106578609 other upstream 2546270 33604513 ~ 33604810 (+)
G972725 NA other downstream 92329 36249973 ~ 36250586 (+)
LOC110535658 NA other downstream 1384452 37542062 ~ 37543202 (+)
G973918 NA other downstream 1493494 37651138 ~ 37679368 (+)
lztfl1 LOC106590188 other downstream 1673877 37813177 ~ 37835340 (+)
LOC110535015 LOC106578726 other downstream 1862805 37866715 ~ 38045713 (+)

Expression


Co-expression Network