sox17 (LOC106578689)


Basic Information

Item Value
gene id sox17
gene name LOC106578689
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 36231115 ~ 36233394 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620744.2
AGTCAGCTCCTGGCTATTATCTAACAGTGACGGATATTTCCCATTCAGTTTGGAATCGTTACTCTTGCGTTAACGATCATTGTTATATCTGTACAGCTAGGGGCActtctgttttgttgttttttttgctcgAGTTTCTGCGGTTGGTGTCGATAGAACAGAGATGAGTAGTCCGGATGCGGGTTACGCCAGTGACGATCAGACCCAGGCTAGGTGCGCGATGTCAGTCATGATGCCTGGAATGGGACACTGTCAGTGGGCAGACCCCCTGAGCCCTCTCGGGGACACCAAAGTGAAGAGCGAGTCGTGCGCTACCAGCTCCGGGAACCAGAACCGTGGAAAGACTGAGCCGCGGATCCGGCGACCCATGAATGCGTTCATGGTGTGGGCAAAGGATGAGCGCAAGCGCCTGGCACAACAAAATCCGGACCTGCACAATGCGGAGTTGAGCAAAATGTTGGGGAAGTCGTGGAAAGCCCTTCCTGTGTCCGAGAAGCGCCCCTTTGTAGAAGAGGCTGAAAGGCTCCGGGTCCAGCACATGCAGGACCACCCTAACTACAAATACCGACCCCGGCGGAGGAAGCAGGTGAAGAGGATTAAGCGTCTGGACTCAGGGTTCCTGGTTCATAGTGTGTCCGAGCACCAGAGCATGGAGGGCCTGGGGCTGGGTTACCACCACGAGCATGGCTACCAGGTGTCGACTCAGTCCCTTGGCCACTACCGCGACGCCCAGGCCCTCGGGGGGGCTTCCTACGAACCCTACAGCCTGCCCACCCCCGACACCTCCCCACTGGATGCCGTGGAATCAGACTCCATGTTCTTCACCGGCCACTCTCAGGAGGAGTGCCACATGATGCCTGCGTACGCCTACCACTCCCAGGGGGCAGAGTACACGCCTCAGGACCCTCAGTCCAACCAGCACGCCAACCACATGCTCCAcagacacctctcctcccccactgaGCAGCAGCAAGGCCACCAGGCTGGCCCCATGCCCCCCTCCTTCAACCAATTGGCTATGTACTACAGCCAGCATTGTAGCCCCAGTCACCCCAAGCGACACCCAGGACATGGGACAGGACAGCGCTCCCCTCCCCCAGACTCCCACCCAGCGGACCAGGTAGAGCAGATGCATCCATCAGAGCTGATAGGTGAGGTGGACCGGAGTGAGTTTGAACAGTACCTGAACTCCTCCAGACCTGGGGACATGACAGGCCTGTCTTATGGGGCACATGAGGCCAACATGCAGGGACCTGAGAGCCTGATATCCTCTGTGCTCTCTGATGCCAGCacagtgttctactgtaactacaCCTCCTAACCTCCTGGTCCTCCCTGTCTCTACTACTGAAGCCATTACAGCACATAACCTGACCTCaaatgtctctttctgtctcctgtcactatttctcttctctctttctctccctctctctccctccctgcctccctttctctttatgtCTTTCTCTTTCATTCTGTTACAATTGAAGGCCAGTGGGAACAGTGGGATCTCTTTAATTTGAGGGTTCAAATTCAGTATGTTATTTTCTTTTTGTGTGAAGGGCGTTCAATGTGTATCACTGTATGAGCTAAGAAGCCATAGTATGACATCTGAATTGTAATGATGATTGTTCACACATTGGTTTGGATTTTCTCTTTGTTCTGAAGaggaatataaatacattttctgaTAATAAATCATGTACAGTTACTATTTGAACGTTTCATGTATAGCTGTTTTATACTTTTGCACTTTTGAAAAATAAAGTTTTGAACCAAAATA

Function

NR:

description
transcription factor Sox-17-alpha-A-like

GO:

id name namespace
GO:0070121 Kupffer's vesicle development biological_process
GO:0035469 determination of pancreatic left/right asymmetry biological_process
GO:0061371 determination of heart left/right asymmetry biological_process

KEGG:

id description
K04495 SOX17; transcription factor SOX17 (SOX group F)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620744.2 True 1786 mRNA 0.52 2 36231115 36233394

Neighbor

gene id symbol gene type direction distance location
LOC110535014 LOC106578720 coding upstream 40042 36189424 ~ 36191073 (+)
LOC110535631 LOC106578690 coding upstream 52017 36164789 ~ 36179098 (+)
LOC110535630 LOC106578722 coding upstream 73471 36151080 ~ 36157644 (+)
LOC110535013 LOC105015730 coding upstream 155382 36065212 ~ 36075733 (+)
LOC110535012 LOC106590147 coding upstream 211293 36012646 ~ 36019822 (+)
LOC110535634 LOC106578686 coding downstream 21829 36255223 ~ 36266074 (+)
LOC110535637 LOC106578684 coding downstream 111332 36344726 ~ 36461901 (+)
LOC110535639 LOC106578683 coding downstream 242108 36475502 ~ 36489512 (+)
c-myc LOC106578682 coding downstream 299539 36532933 ~ 36535742 (+)
LOC110536619 NA coding downstream 312004 36545398 ~ 36584763 (+)
G972699 NA non-coding upstream 34966 36195843 ~ 36196149 (+)
G972698 NA non-coding upstream 36053 36194781 ~ 36195062 (+)
G972687 NA non-coding upstream 48826 36182075 ~ 36182289 (+)
G972688 NA non-coding upstream 49266 36181431 ~ 36181849 (+)
G972663 NA non-coding upstream 71746 36158998 ~ 36159369 (+)
G972727 NA non-coding downstream 19186 36252580 ~ 36252784 (+)
G972749 NA non-coding downstream 56520 36289914 ~ 36351851 (+)
G972741 NA non-coding downstream 57516 36290910 ~ 36291508 (+)
G972744 vps41 non-coding downstream 58993 36292387 ~ 36295696 (+)
G972742 vps41 non-coding downstream 68703 36302097 ~ 36302909 (+)
G970489 LOC106578645 other upstream 1708775 34516457 ~ 34522340 (+)
G970283 NA other upstream 2051067 34179703 ~ 34180048 (+)
G970054 LOC106578636 other upstream 2060128 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 2436054 33794375 ~ 33795061 (+)
G969456 LOC106578609 other upstream 2626305 33604513 ~ 33604810 (+)
G972725 NA other downstream 16579 36249973 ~ 36250586 (+)
LOC110535658 NA other downstream 1308702 37542062 ~ 37543202 (+)
G973918 NA other downstream 1417744 37651138 ~ 37679368 (+)
lztfl1 LOC106590188 other downstream 1598127 37813177 ~ 37835340 (+)
LOC110535015 LOC106578726 other downstream 1787055 37866715 ~ 38045713 (+)

Expression


Co-expression Network