LOC110535634 (LOC106578686)


Basic Information

Item Value
gene id LOC110535634
gene name LOC106578686
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 36255223 ~ 36266074 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620745.2
ATTAACCAATCAAAATGAGTGACGTGGTGCTCACAAAGTGCGCCCAGGACCAGTTCTCAGGGAGTGGGCACACAGTGACCACGTCACGCCACCCATATATCACAGACCCCATCGCCTCCAAGCGCATCTGCTTCTACAAGAGCGGTGACCCTCAGTTCAGTGGCCTGCGCATGGTCATCAACAACCGCACCTTCAAGACTTTCGATGCCCTCCTAGACAGCCTCTCCAAGAAAGTCCCGCTGCCATTCGGAGTAAGGAACATCACCACTCCCCGAGGGGTCCATGCAGTGCACACACTAGATGAACTGGAGGATGGGAAGGCCTACATCTGCTCTGACCAGCGGAAGGTCAAACCCATTAACATGGCAGTAGCCAATAAGAAGCTACCACCCTGGTACAATGCCCGCCCCATGAGCGCCCGGCATCGGGCCTTGCAGCTGGCCAAACAGAACCCTGGCAGGCCCATGCACATAAATACCCCTGTCATTGTACGCACACCTAAGAGGTTGATGGTATTCCAGAATGGGGACCCCAGTGTCAAACATAATCTGATGCTACAGAAGAGAACCACTCACACATTTGAGGCTCTGCTGGATTACTTGTCCGAGTTGATGCACTTTCCTGTGGTAAAACTACACACACCAGATGGAAGAAGGGTGGATGGGCTCCCAGCTCTGATTATATGCTCTGGGATTGTAGTAGCTGCTGGTCGCGAGGCCTTTAAATCTGGGAACTACAAGACACAAAAATCTTCTGCTTCAACATGGCTGCCTGCTAGACGAATGGCATCTAAAAGACTAAAGCAACCAGCATCCCGGAAAAAGAAACCTATATCTAGCGGCAAATCAAAACTTTTCTCCCCATCGTCAGAGAGATACTTTGTGAATCAGATAAACCACTGCATTGCAGGAAGTGAGTGTGACCTCCCCAGTAACAACGCAGAATCTGTAGAACTGGAGGCTGGCCATTTTCTAGAGTCAGTGGCCGAAACAGATGGCGACTCCTACCATGGAGATAGGGGTGAAGGTGCAGTCAACTGCATGCCCGGTGACGATGACATTGAGAAGTCCTTTCGGGTGAACCAGGATGGCAGCATGACAGTGGAGATGAAGGTGCGACTAACCATCCGGGAGGAAGAAACCATCCACTGGACCACCACCCTGAGCAGGTCCAGTGTGGCCAACCAGCTCAGTGCGGCTGAGTCTGAGCTGGAGAACAGTTCACCTGAGTCCAACATCCTACcaccaacacaacccaacaccaTGGGCACCATCAATGGGTACAATGTTAAAAAGGATGATCATGATGATAAGGATGATATGCCTCCAGAGACCAGCAGACTTACCAGTGTGGAAGTAGACAATGAGGATGATGCTACAACACATGTGGGTGTGGTCTCTCCCAGGAGGGCTCCTACCCCAGGACCCAGGAGATACAGACAGAAGCAGGCCTCAGTGGAGAGCCTCAAAACAATGTTGGGAGATGAGATTCAGGAGAACATGGTAGGTTCTAACTCCTACAGAGAGACAACTGAGAACGGAGAGGTAAAGGAGGAATACCGCATGGTCAGACAGTGCAGCAGCAAGCCAGTTCCTAAACCAAGAGGAGTTGGATCTGTGGATATCAACAATTACAATAAGACTCAATCGACTTTTAAATCAGGCATGGCTGAGATCTTGCAGATCCAAAATGGCGGGGAGGAAGTCATAGAAAGTGTAATGCACATATACGAGCAGCAGACCTGTCAGGACAATTTCCTGGCTAACAGCCAGTATAATGTCCAGGGTGTGTCCATATATGGGATGATGTACGGAAGAACAGCCACCTCTGACACAGCCCACTTGTCCTCCAGTAATGACTTGGAGCTGGAGCTGGGTAGACCCTCTACGGCCTCAAAGTCAATCAGCGTGTGGAGGGCTGACCAGTCTCTTTCATCTGAGTTCACCATCCCCAAATTTAAGGCTGGAGGATCTCTCCTACGCAACAGGGTACTAAATGTCCATAAAAGCCCTCTCTCCATGCCCACCAAAGACAATGACACCCCAGAGTGGGTCTCTGAAGCAAGCAAAGAAAACTCCACCACTGGTGTAAAGAAAGTCAAGAAAATGTTCTCAAAGCCCAAAGTCAAAAAGAACCAGGTTCGTAAGGTTACAACACCAGACAAAAGACGTAAAGAGAGTAATGAAAATGCTCATGGAAACAATAAAAGAGTGAAAACTGGGGGGTTTAGCAGCAATGTATCCataaggaaaatgtatggaccAAAACCTGCCAGAAGTCTCATCAAAAACAAAAAGAAACTAAAAGGAAAGGAAATCAAGTTAAATATTGAAAACCCAAAGGAATCGGCAGTGAAAGAATTACACGTTACTGAAAATAGAAACAATACTTCAGTTTCAGTAAAGAAGAACGTATTGCATGTTACATTTCCGACGGAGGCCCTGGTGGAGGGAACACTAAAAAGGCAGAGGTCTATGCACGAGGAGAGAAGGATTGATAAAGATAGTCATGATCTGAGCTCTTCTAATATCAATGAATATGTTGAGAATTGGTTAGAGAAAGCCCTCCCAACTGTGTACCCAGACCCAGTGGAGGAAACTCAAAATGTGGAGACAACAACAATGTCTCCGGTAGAAACTGAGGGAGACATTGTTCCAGATGTATCAGAATCCAATTGTGAAATGGATACTGAAGAAGATGTGCCTTCATTGTTTAAGGAAATAACACAAATAACAAGTAGTCTATCTTTGGAAACGACTGCATTTCCAAATAGAACATTTGAAAATATAGCAACACAGACCAACCTGGCTTTGGAAAACACAACATTACCATGTCCTTCTGACCAATCATCGCAAAAGACTCCATTACACAGTGATACTACACAGGAAAGGTTGCCCATTAATCCCTCAGTGGAAAATACACTTTTCTCCAAcggtctctccgtctctcctacTGCAATAATCTTAGTAGAAAAGccatcaccatctggcagtcattCATTGGAAGAAACATCAATGCCTAAAAATATCTCAGAAGAGAAGCCACCTATCACAAATGGTCTGTCATTGGAAAATAAATCAGTACCAAATAGCTCCTCAATAGAGAAGACCCCAGTCTCAAACAGTCTCTCGCCTGAGAAGACACAACTGCCTGCTAAAACGCAGATGGAGAAGGCACCATTATCCAACAAAGACTTAGATGTGTCTTCCATAGGTAGCAGTCCTTCATATTTCATGTGTTCATCACCTAGTAGTCTAGGTGATGAAGAACAACCCTTATCAAGTAGTCCTTCATCAGATAAGGCTCCATCACCTACTGGCCATGTATTTGAAAAGACAACattgttcaaccactccactctgaaatcaccaccatcacctaaACTCCCAACAAAAAAGGCAAGATTGGTCAGTAATCTCACCCTGGAAAAGCAACTAACACTTAGAAAAGCTTCAGCTGAGAAGTCTTCAATATCCAGTGATCCTACTGTGGAAAAGGTGTTGATGGATAAGGCACCAATCTCCAATGGTCTCTCATCTGAGAAGCCTGCTAAAACTCGGATATCCAACATTGTCTTAGATGAGGCTCCCTTAGCTAGTAGTCCCTCATGTTTCATGTCGACATCATCTACTAGTCTCACGTCAGATGAAAGACCCATATCAACCACTGGCCATGTTTTGGAAAAAACAACATTGTTTAACCACTCCACTCTGAAAGGACCATCAACACCTAAACTCCCAATGAAGAAGAAGCCAATACCTCCCAGTCCCACTTTAGTGAATCACAAAGAGATGAATGGGGATGATAAGCTGAGCAATTCAGATCAGGGAGACAGTACCAAAGTAACAGCAGAGGAGCCCCTAACAAAAACACAGATACCGTCACCCACAGACAAACTTCCTCCCCAGCCAGATATGAAACCTGTGCTAGAGAAGCTCTGTTTCTCAATTCAGTCAATTAGACAAATCACACACAACAACCGTCCATCTTGTCTTGAAAAGTCAAACAGCTTGCCTGATTTCTCCTCCCATGTGGCCTCTACATTTGGGTCATCTACTAAAGCTCTCCTTTCTTTCTTATCTGTTATTACTTTAAAGGAAAGCTTCACTAACTGGAACATACCTGAACTGAATGCAAACAGTGTAAGCTGTACTGAGGCTTTGAAAATGATGGAGTCTCTGAGAGAAATTGCCAATATGGAGGGTGCAGAGGAGTTGAAAGCTAGTCTGTCAGAATTGCAAAAGTCAACTTCCACACAACTGCTTCAAAGTTGGAAGGGTTTCCAGGAACTCAACAGCAAAGTCAGAAGTCGCAGCTCAACACCGAACAGTTCAGAGCACAATGTCTTGTTTGAAACATGCCCAGAGAAGGACTACATCATTGAAGAAAAGTCATTGGATATCGATGAGCTAATACATGAGCTTGACTTGCCTGGAAAGCTGATGGAAGCATTGGCAGCCCTTCCAACCGGGGTGAGCGAAAGCATGGAGGGGGATGAAATAGAAATGTCTAAAGAAGCGAATGAAAAAGTGGAGTCATTCCCAGAGGAAAGGGTAAATGCCAAATCAACTGCAGTCCCTAAGGAAGAGGCTTCAAATGATAATGTGCTTAATATTGATGCTAATGTTGATGTTAAATCCATCGTTAAAAGATTTATAAATATTTACCATCCCAAAGAGGTGACTGAAAACAAGATGTCACCAATCCCAGAGAGCCAAAGCAGTAGGCAAGAGCAACCCTTCTCCTCAGAAGAACAAAACTTTAAAGAGGATTTTACTTGCCATAGAAGCAGACAGGCAGCGAATAAGGAAGGTTCTGAACTCGAGCAGGACAACTGGGAAGGAGAGGCTAAATGTAGCGACAAACAGATTGACCATGATAAAGAACAGACATACTCAGACATAGAGCAGGCTTACAGTTTAGCATTGCATGATGGCTATTTGGAACTGCAAGCGTGTCCCTTGGAGACCAAAGTGAAGGATGGGGACATACAGTCAAgctatgtggaggaggaggaaagctTGGAGGAAGAGCAGGAATACTATATTGAGAATGCACTTGTGGAGCAGGAGAACAAATGTATGGAGCTGCAGGTTAGCTGTAAGGAAAGCTTAGAAAAAGACCAAGCTAGCTCGGAGGAAGAACAGGAATGTCATGTTGAGGACCAACTAAGCTATATGGTATCAGAAAATAGATGTATGGAGAATGAATGCTTGGAGGAAGAGCAGCAATGTCACATAGAGGATCAGCCAAGTTATGTGGGGCTGCAGGTTAGCTATGAGGAAAGAGTATGCAGCCTCAAGGAGCAGGCTACCTCAGAGGAAGAATATGAATGTCATATAGAGGATCAGCCAAACCATGAGGAGCCAGAGGTCAAATGCTTGGCGCTGCAGGATAGCAGTGAGGACGGAAAGTCGACCCCTGAAGAAGACCAGGCTATCTCAGATGAAGAGCTGGAACATCATGTTGAGAACCAACCAAACCATGAAGacactgagattaaatgtatggATGCAAAGGTTAGCAGTGAGGAAAGCATGTCTAATCTTGAAGAACAGCAGGCTAGCTCAGAGGAAGAGCTGGAATGTCACATTGAGAACCAGCCAAGTCATGAAGAGAAGGGGGTTAAATGTATGAAGATGCAGGTTAGTAGAGAAAAAATAGAGTTCACCCCTGAAGAAGACAAGGCTAGcttgggggaggaagaggaaagcCATGAAGATGACTTGAGCTATGCAAATGCACACATTAACGTGCAGGATGAGCAGACTCACTTATGGGTGGAGCAGACTACTCAAAAAGAAACGGAGTGTACTGTCAGAGAAACACTGTCTAGATTGTTCAAACAGCATTCTATTGCTGACAGGATGGATAAGGATAGTGGGAAGAATAGTGCGCAGCATGTTAGCTTCGAACAACAAACTGATACTGCAGAAGAAGCAAACTTTGAGGATAATCAGTGTAGCTCAGAGGAGAAGCGAGTAAGCTATGAAGAGAAGCTGTCTGGCTCTGATGTAGAACATGTTAGTGTAGAGGATGAGCCATACCCAGAGGAGGAGTATCAGGAAACCTTAGAGGAAGAGCCTTCTGAGGAGGATAAACATTATGAAAAGACTGAAGCAAAAACAACCAACTGTTTTGAGGAGCCATTACCATCTGTAGCAGAGCGAGTAAAAATACTGGACAAGAAGATTGCTGATATAAAGCAAGGGAAAAGCATTACTATAGCGACAACTGGCATCAAACCGTTTGGCCAAATAGAGGTTTCTGCTGTCTCAGGCGGTGATGATGCCAAAGAGCAAGACAAAGCTCATGTGCACACTTTTAAAAGGACAACATGGCCTATAAATACATCAGAGACTGTAGTCATGTCCCCCCCAGCTCCACGATCCTTGTTGGCATTTAGCTATGATGGCTGTATAACTAGAGAGCCTGACGGAAATAGGGTCAAGTCAATAAAGGAATTGTTTATAGCAAAAAGCGTTGTGGACAATCTGTATGGACAAACAAGACTACCCAGCCCAAACACCTCAGATCTGTCTGACAACAGACCGGAGACTTCTGGCAGTGGTGGTCATCAATCACAGACATCAACTGAGACGTCCAGTGGTGAGGATGATTCAGTGAAGAAATCCATCACCAAATGCGTTGTCAGGAGAACAATCGAAAGGCTTTATGGAAAGAAAGATACCAATGTCAAAGACCGTGCCCGTGAAAGTCTGCCCCCATCTCCCCTGAAACCAAAGTCCAGAAAATGTCCTGGTAAGATCAGCCTTTCCCCATTTCATAATGCACAGACCAAAGGGATGTCTGACTTATCATACTTCAATGCCACAAGCTCTGTAGGCACATACAGTGATCCAACACGGTATATCGCCTTCAATGCACAGGTCGAGCCTGGAGACTGTTTCCTGATAGACAAAGACAGGTGGCTCCTCAGAGAGAGCGTGATCAGAAAGTCTGTCTCAGAGCCTATTGATATCAACAAGAACACATCTGCATCAACTGAAGATGTGTGCAAAAATACAGAAGAAGACGTCCCTTACTCCCTTTTCGGCCACACTGATTTCGAGGACATAGTGAAGTCTGTGAAGCCTTTGGTGCAAAAGTGCACCTATTTCAACCTGCCTCATGGCTGTGACTCAGACCCGCACCAGGATGACCTAAGCCCCGTCAGCAAGGGCAGTGCTAAGGGTGACGTCTCAAAGGACAGTAAAGACAAGACAGAGAAACCAAAACTGTGGGCTGAGAAGAATGGAATAGCTTTTGCCCCTACTGACTTCAAGATGCCAGATAATAAAGTGCACCCTCTAATAGAAGGCCCGGGAGGTGGAAaggttgttgtggtacagcctggcaAACGTCAGCCTGGCAAAGGTCAGACAGATGTCATGAAAATTCCACAGGAGCCAGATGCGCTAGAGATGCTCTACTTCTCCTGTGGCCAGCATTGCCCCATCCTGTGACTGTAACACACTTAAATGTGGACTTTTTTTCTCCACAGGCAGCTTAGAATCTTACTGAGGCTATTCAAAGGTACCAGGAgatgtcatatacagtgcctatagaaagtctaTACCCCTTTAACATTTTTTCAAATCTTGCTGCCTTAAAATTCTATTTTAAAAAGGATTacattagacccccccccccccccctacagatCTACACAATCTTCTCAAAGGAGACACTGGACTGATCTTATGGCACATATTGTTAGTTGATCACATGCTCTAGAAATGTATTGTCTGTAAGTAACCCCCTGATACTTAATGTTGTATTGTGTATTAGCTGTAGTTAATTTATCTGTGTAAATGCATTTCTCTTGCATCATTACATGGGAGTGAACTCCGAAAGCTCCAGCTTGCATTTACAAACATAACTTGCAATAACAGATCAACTTTTATTACAGTAGTTGTATATAGATGTTTATGACCTTTCTACATTTCTGGCAGCTGTGATCTATTGTTCTGTTGAGTTTCTTCACTTTATTTTTGTGATATGTCAATTAAACAAAACAGAATCTA

Function

NR:

description
oxygen-regulated protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620745.2 True 8027 mRNA 0.45 3 36255223 36266074

Neighbor

gene id symbol gene type direction distance location
sox17 LOC106578689 coding upstream 21829 36231115 ~ 36233394 (+)
LOC110535014 LOC106578720 coding upstream 64150 36189424 ~ 36191073 (+)
LOC110535631 LOC106578690 coding upstream 76125 36164789 ~ 36179098 (+)
LOC110535630 LOC106578722 coding upstream 97579 36151080 ~ 36157644 (+)
LOC110535013 LOC105015730 coding upstream 179490 36065212 ~ 36075733 (+)
LOC110535637 LOC106578684 coding downstream 78652 36344726 ~ 36461901 (+)
LOC110535639 LOC106578683 coding downstream 209428 36475502 ~ 36489512 (+)
c-myc LOC106578682 coding downstream 266859 36532933 ~ 36535742 (+)
LOC110536619 NA coding downstream 279324 36545398 ~ 36584763 (+)
LOC118937471 NA coding downstream 441378 36707452 ~ 36707506 (+)
G972727 NA non-coding upstream 2439 36252580 ~ 36252784 (+)
G972699 NA non-coding upstream 59074 36195843 ~ 36196149 (+)
G972698 NA non-coding upstream 60161 36194781 ~ 36195062 (+)
G972687 NA non-coding upstream 72934 36182075 ~ 36182289 (+)
G972688 NA non-coding upstream 73374 36181431 ~ 36181849 (+)
G972749 NA non-coding downstream 23840 36289914 ~ 36351851 (+)
G972741 NA non-coding downstream 24836 36290910 ~ 36291508 (+)
G972744 vps41 non-coding downstream 26313 36292387 ~ 36295696 (+)
G972742 vps41 non-coding downstream 36023 36302097 ~ 36302909 (+)
G973455 NA non-coding downstream 566721 36832795 ~ 36833926 (+)
G972725 NA other upstream 4637 36249973 ~ 36250586 (+)
G970489 LOC106578645 other upstream 1732883 34516457 ~ 34522340 (+)
G970283 NA other upstream 2075175 34179703 ~ 34180048 (+)
G970054 LOC106578636 other upstream 2084236 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 2460162 33794375 ~ 33795061 (+)
LOC110535658 NA other downstream 1276022 37542062 ~ 37543202 (+)
G973918 NA other downstream 1385064 37651138 ~ 37679368 (+)
lztfl1 LOC106590188 other downstream 1565447 37813177 ~ 37835340 (+)
LOC110535015 LOC106578726 other downstream 1754375 37866715 ~ 38045713 (+)
G974184 NA other downstream 1791724 38057798 ~ 38063100 (+)

Expression


Co-expression Network