LOC110535639 (LOC106578683)


Basic Information

Item Value
gene id LOC110535639
gene name LOC106578683
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 36475502 ~ 36489512 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620751.2
acaatTTCCTCAATTCCATGAACCGGAAGTACTTTATTTTTGTGTCGCTGAGGAAACGTTGATCAGACACGTGCACACAGCGTTTATCAACTGGTATATATATAGCATTTTTGCAAGTGGGACACctgtgtaaaatatgttttggaaGCGTTAAACTCAGAACTCGTATGAGGATGATAAAGGAGATATCCAATGTGGATTGACTGAAGTCCCATCTTTGGAAGACCTCTTAGAGGAAGAACTGCCAGGAACAGAAGGATGAAAAGGAAAAGGAGAAAGAAGAATGCTGCTGTAACAGAGGCcatgggaggggaggaggacccAAAAGAAGAGGCCCACCAGGGGCCTAGCACCTTAGCTGATGTGAGGGAGGAATATCGTCCAGCTGTGGAGGATCTGGGAGTTAGTGAGGAGGAAGACCTGTATCGAGGAGCTGAAGATCTCCCCCAAGGGCCAGTCAAACATGCAGGACCGGAGGCACTGTTTGAAAGCACACTTCCGAAGGCTGAGGACCGATGCAGTCTGGAGCCGATGCTGGATATTCTGTTCTACAGTGAGAGTGAGTGGAAGGGAAACACTACCAAAAGTACCCTTATTAGAAAGGGTTACACTAAGCTGTCTCAGAGGTTTGAGAGCCTGAGACGGGTGAGAGGCGATAACTACTGTGCCCTCCGAGCCACTCTTTTCCAGGTGCTCTCCACCAGCACCCAGCCTCCTGTCTGGCTGCAGGTCGAACACATCTCCACGTGGGCGGAGGAGCTGGAGGCACGTGAGGGGCTGATTGGCCAGTGGATGTTCCCCTCGGAGTGCAGACAGGGGGATGGGAGCGAAGACGCCGTCCAACAGCTCAAACGCTATATGGAACTCCTCCAGAACAGGTGGCAGGCGGCGGTGGGCTGCTCCAGCATGGAGGAGAGACAGCGGTTGTGTGAGCGTGTGTtccagggaggggaggaggaactGGGGCTGCTGGAGGCCCTGAAGCTCCTCATGCTGGTCCGGGCGTCGGAGTTCCATACCACCATGCAAGAGGGAGGGGACGTGCCCGTCTTTTGCTGGCTGCTCTATGCACGCGACTCTTCCGACTGCCCACGCACATTCCTCTCCAACCACCTGAGTCGAGTGGGTTTCAGCGGGGGTCTAGAGCAGGTGGAGATGTTTCTGCTCGGATATGCCTTGCAGTGCACCATCCAGGTCTACAGGCTGTACATGACAGACACTGAGGAGTTTGTCACCTATTATCCTGATGACCATAAGGAAGactggccctgtgtgtgtctggtcACAGAGGATGACCGCCACTACAACGTCCCAGTGGGACAGCACAATGGACTCCAAGTCCCAGAAGACGTCCCTCCAGACTGTTTGGACTCTAAGTCCCAGGCTGATTGCCACTGAAGAAAAAGCTCATGGCATGCACACAGGGCCATAATGTCAGAAGGCTCCTCAGGTTGACTGGAAGAAGACTAATGCTTATTGACAGTTTACACTTAGTTAAAAATAGCTTTTGGAGTATGActagggcagaacgacaggtttttaccttgtcagcacggggattcgatctagcaaccttttggttactggcccaacgctctaaccattaggctacctgccgccccaatgtggCTTGCTTGCTTGCGTTGAATCCCGTCCCAGAACTGATGAATAAATATCAGATCACACAATACCATCACGATGCATTTTAATATCAGGTGTAAATGGTGTCTGTCAGATGTCCACTTGCATGAGAGATGGACACTTAACCATCCTGCAAAAGGTGACCAGAGCAAACTACAGTAAGCAGAAGTCGAAACCTCACAGCACGTCATTTAAAATAGAACTACTTCATGTTAAGGGTTTAACTTTGACATTGTTTGACACTGAACCATTTTGATACCAGTATTTgctgtgacatttaaaaaaatgtaaaacatgatATACCGGTACACTTGCATTTTGAGACAATCGTAAGGTTAGCACTAGCAATAACGTATTTGAAGATAGGCTTAAACTAGAATACAGAGGAGATTGTTTGATCATTTGTCCCTGTGTCAAAGGCATGCCTGGTCTCTGCTTTTGCCATTATGCACTTGACTGAAGGTGTGATCTTTTTTTCGATATGTAACATGTTGCCTTTAACCAAGGTGCTCTTGGAGAAAAACATTGTGCCAGTGTTGTTGCAACATCCAGATACTGGCAACTGTTTCCAGGTTCTATGTTAAACCACCAGCCTCAGTTGGGTTCCAGATAGGAAGCCTGGCTTGGTCCTCCATGTTGCCTTAAGTTATTTATGTGCAATAGGGGTGAAGATTGGCAATTGCTGCCTAGAGACCATTTAGGAAGGAAAGATCAAGGTAACACTGATTATACCACTTGGGTAAATGCTTTTCTACAttgttcaatttttttttttattcactgtGTCAATGTTTCAATAGTCTTCTATTATTTTGATCTATTTATTTATACGAGTTCAGCACGAGAAATTGTAGGCTGTATAGAAATAATTATACTCAAAtgaaattaataaaataatgatttatAT

Function

NR:

description
ubiquitin thioesterase otulin-like

GO: NA

KEGG:

id description
K18343 OTULIN; ubiquitin thioesterase otulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620751.2 True 2548 mRNA 0.47 8 36475502 36489512

Neighbor

gene id symbol gene type direction distance location
LOC110535637 LOC106578684 coding upstream 13601 36344726 ~ 36461901 (+)
LOC110535634 LOC106578686 coding upstream 209428 36255223 ~ 36266074 (+)
sox17 LOC106578689 coding upstream 242108 36231115 ~ 36233394 (+)
LOC110535014 LOC106578720 coding upstream 284429 36189424 ~ 36191073 (+)
LOC110535631 LOC106578690 coding upstream 296404 36164789 ~ 36179098 (+)
c-myc LOC106578682 coding downstream 43421 36532933 ~ 36535742 (+)
LOC110536619 NA coding downstream 55886 36545398 ~ 36584763 (+)
LOC118937471 NA coding downstream 217940 36707452 ~ 36707506 (+)
LOC110535645 NA coding downstream 338969 36828481 ~ 36829107 (+)
LOC110535646 LOC106578679 coding downstream 426669 36916181 ~ 36946510 (+)
G972749 NA non-coding upstream 123651 36289914 ~ 36351851 (+)
G972742 vps41 non-coding upstream 172593 36302097 ~ 36302909 (+)
G972744 vps41 non-coding upstream 179806 36292387 ~ 36295696 (+)
G972741 NA non-coding upstream 183994 36290910 ~ 36291508 (+)
G972727 NA non-coding upstream 222718 36252580 ~ 36252784 (+)
G973455 NA non-coding downstream 343283 36832795 ~ 36833926 (+)
G973611 NA non-coding downstream 595330 37084842 ~ 37086656 (+)
G973659 NA non-coding downstream 641393 37130905 ~ 37134701 (+)
G973716 NA non-coding downstream 742173 37231685 ~ 37231898 (+)
G973721 NA non-coding downstream 747282 37236794 ~ 37237025 (+)
G972725 NA other upstream 224916 36249973 ~ 36250586 (+)
G970489 LOC106578645 other upstream 1953162 34516457 ~ 34522340 (+)
G970283 NA other upstream 2295454 34179703 ~ 34180048 (+)
G970054 LOC106578636 other upstream 2304515 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 2680441 33794375 ~ 33795061 (+)
LOC110535658 NA other downstream 1052584 37542062 ~ 37543202 (+)
G973918 NA other downstream 1161626 37651138 ~ 37679368 (+)
lztfl1 LOC106590188 other downstream 1342009 37813177 ~ 37835340 (+)
LOC110535015 LOC106578726 other downstream 1530937 37866715 ~ 38045713 (+)
G974184 NA other downstream 1568286 38057798 ~ 38063100 (+)

Expression


Co-expression Network