c-myc (LOC106578682)


Basic Information

Item Value
gene id c-myc
gene name LOC106578682
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 36532933 ~ 36535742 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124699.2
TGTCATCCAACATCACGAGCAAAAAGAGCTGTTATGCATGCTTCTCAGTCAGCCACTTTAATAGGAAACTAACATCTCCTTATCACACACGCTGGCAAGGATTAATTTGACTGGCTTGTTTGGAATACTTCTCACAATCTACGTTTTTGAGTTCGTGAATTGACCTCCACTTTGTTTTACAAACGCAAGGAAAGAGCGACAATGCAGCTATATTCAAGTTTGGCAAGTAAAAACTACGACTACGATTCTATTCAGCCATATTTTTATGTTGACAACGAAGATGAGGATTTTTATCACCAGCAACAAGGACAACTTCAGCCACCGGCTCCAAGTGAGGACATCTGGAAGAAATTTGAGTTGCtgcccactcctcctctctccccgagTCGGCGACCATCACTGTCTAGTCTTTTCCCTTCAACTTCTGACCAACTCGAAATGGTGACTGAGTTTCTCGGGGATGACGTTGTAAACCAGAGTTTCATCTGCGATGCCGATTACTCTCAAACCTTCCTCAAGTCTATCATCATCCAGGACTGTATGTGGAGCGGGTTCTCGGCTGCAGCCAAGTTGGAAAAAGTGGTGTCTGAAAGACTCGCCTGTCTCCAAGCTGCTAGGAAAGAACCAGCTTTTAGCGACAACGCGGAGTGGACTACTACTCGGTTGAACGCAAACTACTTGCAGGATCTGAACACATCCGCGTCCGAATGCATTGATCCCTCAGTGGTCTTTCCCTACCCAATAACTGATACTTCCAAATCAAGCAAGGTGACACCACCCACGGATTTGGCATTGGACACCCCACCcaacagcagtagtagcagtggtagtgaCTCAGAATATGAGGAGATAGATGTCGTGACTGTGGAGAAGAGGCACGCAGAGAAGCGGTGCGACCCCAACATGTCTGGGACCAGACATCACAGTCCCCTTGTGCTGAAGAGGTGCCATGTCTCCACCCACCAGCACAACTACGCAGCTCACCCCTCCACGCGGCACGAGCAGCCAGCTGTCAAGAGGCTGAGGCTAGAGAGCAGTAACAGTGGCAGCAGCAGCCGGGTCCTCAAGCAGATCAGCAGCAACCGCAAATGCCCAAGTCCCTGGGCGTCAGACACTGAGGACTATGACAAAAGAAGGACTCATAATGTACTGGAGCGCCAGCGGAGGAACGAGCTCAAGCTGAGCTTTTTCGCTCTACGGGACAAGATACCGGAGGTGGCTAACAATGAAAAGGCAGCCAAAGTGGTCATCCTGAAGAAGGCTATAGAGTGTATTTACAGCATGCAGACAGACGAGCAGAGACTAGTCAACTTCAAAGAGCAGCTAAGGAGAAAAAGTGAACATTTGAAACAGAAGCTGGCCCGGTTGCAGAACTCTAATGTTTGAGATCAAAGCGGCATAGACTTTTTGACCTTATCGTTATTAATGCAAGTTAAGACATGGCGTGTATAGTTGATATtgcatggagaaaaaaaaatgggAGTCTTTTTGATTTAAATGTTGAACTGCCTTAATTGAATTATCGGCAGTAAAATATTTTATTAAGAAAATATGAAAATGGGGTACATGTGTTGCATGCCCGACCTAAAATATGAATGTTTTGTATATAATTACTGAGTATTtcctaaaaatgtatttttggatCTCAATTGTCAGGAAGTTCAGGCAGTATATGGGTTTACATATGTTCCTCGATTCATTTGAAATATAAATGCATTTCTTAACACTC

Function

NR:

description
transcriptional regulator Myc-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124699.2 True 1729 mRNA 0.45 3 36532933 36535742

Neighbor

gene id symbol gene type direction distance location
LOC110535639 LOC106578683 coding upstream 43421 36475502 ~ 36489512 (+)
LOC110535637 LOC106578684 coding upstream 71032 36344726 ~ 36461901 (+)
LOC110535634 LOC106578686 coding upstream 266859 36255223 ~ 36266074 (+)
sox17 LOC106578689 coding upstream 299539 36231115 ~ 36233394 (+)
LOC110535014 LOC106578720 coding upstream 341860 36189424 ~ 36191073 (+)
LOC110536619 NA coding downstream 9656 36545398 ~ 36584763 (+)
LOC118937471 NA coding downstream 171710 36707452 ~ 36707506 (+)
LOC110535645 NA coding downstream 292739 36828481 ~ 36829107 (+)
LOC110535646 LOC106578679 coding downstream 380439 36916181 ~ 36946510 (+)
LOC110535649 LOC106578675 coding downstream 411513 36947255 ~ 37051375 (+)
G972749 NA non-coding upstream 181082 36289914 ~ 36351851 (+)
G972742 vps41 non-coding upstream 230024 36302097 ~ 36302909 (+)
G972744 vps41 non-coding upstream 237237 36292387 ~ 36295696 (+)
G972741 NA non-coding upstream 241425 36290910 ~ 36291508 (+)
G972727 NA non-coding upstream 280149 36252580 ~ 36252784 (+)
G973455 NA non-coding downstream 297053 36832795 ~ 36833926 (+)
G973611 NA non-coding downstream 549100 37084842 ~ 37086656 (+)
G973659 NA non-coding downstream 595163 37130905 ~ 37134701 (+)
G973716 NA non-coding downstream 695943 37231685 ~ 37231898 (+)
G973721 NA non-coding downstream 701052 37236794 ~ 37237025 (+)
G972725 NA other upstream 282347 36249973 ~ 36250586 (+)
G970489 LOC106578645 other upstream 2010593 34516457 ~ 34522340 (+)
G970283 NA other upstream 2352885 34179703 ~ 34180048 (+)
G970054 LOC106578636 other upstream 2361946 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 2737872 33794375 ~ 33795061 (+)
LOC110535658 NA other downstream 1006354 37542062 ~ 37543202 (+)
G973918 NA other downstream 1115396 37651138 ~ 37679368 (+)
lztfl1 LOC106590188 other downstream 1295779 37813177 ~ 37835340 (+)
LOC110535015 LOC106578726 other downstream 1484707 37866715 ~ 38045713 (+)
G974184 NA other downstream 1522056 38057798 ~ 38063100 (+)

Expression


Co-expression Network