LOC110535645


Basic Information

Item Value
gene id LOC110535645
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 36828481 ~ 36829107 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110535645
TGAGCATTTTCCTCAAGAATCAGCTATGATCCCACTGCTGTGTAATTCGTTCCAATCTCGGCTGGACCAGGGTCAAGCATATTCTCCCATCTCAGAAAGTGAGAGAATTTTGATTTAATTTATAAAGATGTCTGCTGTGTACATGTCACTGTTCAAAGGTTCCAGTGTGGAAGATCAAGACTGGGATTCAGAAGCCTAGCATGATCCTGTCGTTCTCCCCTGCAAAGCTTACTGCAGAGGTCAAGTCCATTTAGATGCACCACCAGGGCCTGGAGCTGGCTGGGCTTGGTCACAACGTGGGCTTCAACATCAAGAACATAGCTGTGAAGAACTTCCGCTGCGAAGATGTGGCTGAGAACTTTGTACTGTGCTCATTTAGTTCTGTATTACTTCCCACAGCTCATAATCTGAACCATCCTGTCAAAATCAAGACGGGCTACTCTCCTGTGCTGGACTGCCACATCACCCACATGACCTGCCACTTTGCAGAGCTGAAGGAGAAGCTTGACCGTCGCACAGGAATGACGCTAGAGGACTTTCCCCAGACCCTGGAGTCTGGAGATGCTGCCACTGTCAAGATGATCCCCAACAGAACCCCCTGGGAGCTTTTTCACATACCCTCCTTGA

Function

NR:

description
elongation factor 1-alpha-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110535645 True 627 mRNA 0.49 1 36828481 36829107

Neighbor

gene id symbol gene type direction distance location
LOC118937471 NA coding upstream 120975 36707452 ~ 36707506 (+)
LOC110536619 NA coding upstream 243718 36545398 ~ 36584763 (+)
c-myc LOC106578682 coding upstream 292739 36532933 ~ 36535742 (+)
LOC110535639 LOC106578683 coding upstream 338969 36475502 ~ 36489512 (+)
LOC110535637 LOC106578684 coding upstream 366580 36344726 ~ 36461901 (+)
LOC110535646 LOC106578679 coding downstream 87074 36916181 ~ 36946510 (+)
LOC110535649 LOC106578675 coding downstream 118148 36947255 ~ 37051375 (+)
LOC110535651 LOC106578671 coding downstream 286018 37115125 ~ 37222524 (+)
LOC110535652 LOC101448051 coding downstream 395911 37225018 ~ 37226545 (+)
LOC110535653 LOC106578669 coding downstream 431535 37260642 ~ 37331802 (+)
G972749 NA non-coding upstream 476630 36289914 ~ 36351851 (+)
G972742 vps41 non-coding upstream 525572 36302097 ~ 36302909 (+)
G972744 vps41 non-coding upstream 532785 36292387 ~ 36295696 (+)
G972741 NA non-coding upstream 536973 36290910 ~ 36291508 (+)
G972727 NA non-coding upstream 575697 36252580 ~ 36252784 (+)
G973455 NA non-coding downstream 3688 36832795 ~ 36833926 (+)
G973611 NA non-coding downstream 255735 37084842 ~ 37086656 (+)
G973659 NA non-coding downstream 301798 37130905 ~ 37134701 (+)
G973716 NA non-coding downstream 402578 37231685 ~ 37231898 (+)
G973721 NA non-coding downstream 407687 37236794 ~ 37237025 (+)
G972725 NA other upstream 577895 36249973 ~ 36250586 (+)
G970489 LOC106578645 other upstream 2306141 34516457 ~ 34522340 (+)
G970283 NA other upstream 2648433 34179703 ~ 34180048 (+)
G970054 LOC106578636 other upstream 2657494 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 3033420 33794375 ~ 33795061 (+)
LOC110535658 NA other downstream 712989 37542062 ~ 37543202 (+)
G973918 NA other downstream 822031 37651138 ~ 37679368 (+)
lztfl1 LOC106590188 other downstream 1002414 37813177 ~ 37835340 (+)
LOC110535015 LOC106578726 other downstream 1191342 37866715 ~ 38045713 (+)
G974184 NA other downstream 1228691 38057798 ~ 38063100 (+)

Expression


Co-expression Network