LOC110535648 (LOC106578673)


Basic Information

Item Value
gene id LOC110535648
gene name LOC106578673
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 37053321 ~ 37076906 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620761.2
CCCCCTCTACAGACGTCTGATGACGACGTGTCTGACAGCATTTTGCCCCACAAGCGCAGTGCAGAATGGATGCAGAATGAGAAGCAATATTTTCAGATAGTACCTTATCCAGTGCACGACACGCTTTCCAGAAGGTTTCTCTCTGACAAGtagcattttttaaaattaattcaTGAAGATTTGAAAGAGATGCTTTACTTGGAGGCGGTGAATTATTCACTTTGAGGAAGTGAGAGGAAAAAAAGTCGACTTGGTCAACTACTGTAGCTACATCATTAGCCTGACATAATTTGAAGAAAATACAGCATGCATGCTGTGTTTCTGTGGATCACGCTGACATGGAATTTCATCGTTTTCTGACCACCTACAGACAAAATATGGATAACTGCGCCTGCATCAACAAAAATGGAGAGGAAAACACACTTTGTTTTGGGGAGAGAACGAAGGACAAACACCGTTAACTAGGTAGCTTGCTACCCGATACCGAGGCTTGGATGTTGTCGTTTTGTCAGGATAGTTATCTAAAACATGAACAACGTTACAGCAGTGTAAAGCCCTGGCTTCATTGTATGTCGCTAGCTAGCTGGGGACACTAGCCAGCCACCTCACTAGCTAGTTAACTCGTAGCAAGCCAATTGCAAATTGTTATTTCAGCTGGCTAGCGTACTTGTTAGcctactagctagctagatggtTTATTATTGGACAGAAGCCTATTACAGTAGCTAGGTATTGACTGCTGAAGAGTGGCAGTCAATACAGCTGTCTGTTCAGTGTGCCAAGTTATTCTATAGTAAATACCTTATAGTACCTTATCCTTAAATGGCACTGATAATGATGTAGTGAGCTATCTACTCCATGGTGCAGCACAGCCATAATTGTGCCAATTTATCAGATTTGACTGAACCTAGCTTGAAAGTGGTTGGCACTTCACCAGAAGGGCGATTACATGGTTTTAAACAGCATTCTACAAATGTTTGTGGAGAATTTCAGAGGAACATAACATAAAACTTGATTGACAGCACTGAAGTCCACCTCTTCGTTATGCGTCTTTCCTCCTTCCTGGCCGTGTTCAGGCCTGCTTTCCCCCTTATCCTGGGGCTCTCTTTGGGATGCAGCCTGAGCCTGCTGATGGTCTCCTGGACCCAGGGAGACACATTTGACTCGTGTGGAGATGAACTGGGCAATAGGGGTCTCTTCCTGGGCAGCAACAGGGGAGACCCCCATGGGGACCAGAGAGGTGGTCCTGGGAATGAGGACTTCCAGCCACGCGTCATACCATACCACAAGGACCCCAACAAACCACACAAGAAGGTCCTCAGGACGCGCTACATCCACACGGAGCTGGGCATCCGAGAGCGCCTCCTAGTGGGCGTGCTGACCTCGCGGGCCACCCTCAACACGCTGGCCGTGGCGGTGAACCGCACCGTGGCCCACCACTTCCACCGCACCTTCTTCTTCACGGGCCTGCGCAGCTCCAAGGTCCCCCACGGCATGACGGTGGTGGCCCACGGCGACGACCGGCCCGTGTGGCTGATGTACGAGACGGTACGCCACCTGCACCAGCACTATGGCTTGGACTACGACTGGTTCTTCCTGGCCCAGGACGACACCTACATGCAGGCCGAGAGGCTGGCCGAGCTGGTGGGCCACCTCAGCATGGGACAGGACCTCTACATGGGCCGGTCAGAGGAGTTCATCGGTGGGGAAGAGAGGGCCAGGTACTGCCACGGGGGTTATGGCTACCTGCTCTCCCGCAGCCTGCTGGCCCGCCTGCAGCCCCACCTGGACACCTGCCGCAACGACATCCTCAGCGTCAGGCCTGACGAGTGGCTTGGGCGCTGCATCATCGACTACCTGGGTCTGAGCTGTGTGGAGGTACACCAGGACATGACATATCGCTCCTTTGAGCTGGGGAAGAAAGCAGACCCAGAGCGAGAGGACAGTGCCCAGTTTAAGAATGCCTTCACAGTCCACCCTGTGTCAGAGCCCAGCCTCATGTACCGCCTGCACAAACGCTTCAGCCAGATCGAACTGGACTGGACCTACCTACAGATACAGCAGCTGCAGGTCCAGATCAACAACCTGAGTGAGTTGACCCCAGAGGGTAAGGTGGGGGCCATCTGGCCAATCGGGGTCAATCCTCCCTTCATGCCAAAGACTCGTTTCGAGGTCATCAACTGGGAGTATTTCACCGAGGAGCACATCTACTCATGCTCCGACAACGCCCCCAAGTGTGAACTGCGTGGTGCCAACTGGGCCGACGTGAGCGCCGTGCTGGAGACGGCCGTGAAGCACCTCAACGAGCACTACCAGCCCCAGCTGCGCTTCAAGAAACGCCGCCTGCTCAACGGCTACCGGCGCTTCGACCCCACCCGGGGCATGGAGTACGTGCTGGACCTGGCCCTGGAAGCCTTCACACAGAAAGGTCACAGCCAAGTCATCACCAAGCGGGTCAGCCTGCTCCGCCCCCTCAGCACCATTGAGATCATCCCCATGCCCTATGTGACGGAGGCCACCCGGGTGCAGGTCATCCTGCCCGTCACGGTCCGCGAGCAGGACTTTGTGGGTAACTTCCTGGACATGTATGCGATGAACACGCTGGACACGCACGACAATGTCCTGCTCACCTTCCTGTTTGTCTACGACCCCTTTGACGCCCAGCGCGTCAGCGAGTCAGACGTGTTCGCCGGCATCAAGGCCATGATCGGCGAGGTGGAGAAGCGCTACGATGACTTGAGGATCCCCTGGATCAGCGTGAAGACGGAGGTGCCCTCGCAGGTCAAGCTGATGGACATCATCTCTAAGAAGCATCCGGTGGACACGCTCTTCTTCCTGGCCTCGGTGTGGACCGAGGTCAACGCCGACTTCCTCAACCGCTGCCGCATGAACGCCATCAGCAACTGGCAGGTGTTCTTCCCCGCCCACTTCCAGGAGTTCAGCCAGACCATCTTGTACCGCGACCAGCAGACCATGGCCTCCTTCCCCGCCGAGGCCCTGCGCGACGGACGCTTCGACCGCCACGTCTTCGAGGAGGCATGCTTCTACAACGCCGACTACATGGAGTCGCGCACCAAGATGGCCGCTGACATCCTGGACGACGACGAGCTGCTGGAGAGCATGGACGTGTACGAGATCTTCGTGCGCTACTCGGGCTTGCACGTGTTCCGGGCGGTGGAGCCGGCACTAGTGCAGAAGTACGTGCGGCGGGCGTGCAACCCGCGCTTCAGCGAGGACATCTACCACCGCTGTGTGCTCAGTAACCTGGAGGGCCTGGCCTCGCGGTCGCATCTAGCCATGGCCCTGTTTGAGCAGGAGCAGGCCAACAGCACTTAGGGCGTCTAGTGGTACTTTTCCACTGAAGCACTGGTGTCACTCCAGGCTTTTTTCAGGGACAGGCCTCAGAAGGCAACATCTTTGGGCCAAACACAGGTGCAAAGCCTGACAGTGGAAATGCACCATAGGTTTACCATCTAGAATGACTTGATACCTTTGGCCTTCTTTATGAACCTGAACCACACCGCCTAGACTTTTGGACGAGGCATATTATGGGATGTTGAATCTCTAAACGGATCCCTAAGGACCAAGAACCCATGTGCAATCTTAGGCCTGTAAAGACTGAGGAGTGATGTTACAACGTGTGTTCCTGCAAACTGCGTGCAGGCTGGCAGAACTCTGTGCTTTCACTCCAATGGTAGCCCAAGGGGAGCTTCTATCGGTAGGTGATGAATGAACAATGAGCCTTGAGAAAACTGGCATGAGCCATACGTCTTCCTTCATGGCTGTGCTGAATTATGATTCTAATACTGGATTTAAAGAGAAGCCATTGAGTGTATGTGTATTTTCTTTCAATTGACACTTAGTTTTCTTAGTATGTTTATCCCATAGAGAGTGTGATTTGTTTCATGTGGTTTGTTTAATTCCCTAGACAGATAGGGTCTGTTTTTTTTCTACGGATATTAAAGGCAGATGTCGCTTCTGGA

Function

NR:

description
chondroitin sulfate glucuronyltransferase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K03419 CHPF2; chondroitin polymerizing factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620761.2 True 3983 mRNA 0.53 4 37053321 37076906

Neighbor

gene id symbol gene type direction distance location
LOC110535644 LOC106578677 coding downstream 143284 36832749 ~ 36910037 (-)
LOC110535642 LOC106578680 coding downstream 238041 36756396 ~ 36815280 (-)
LOC110535640 LOC106578681 coding downstream 527777 36494081 ~ 36525544 (-)
LOC110535636 vps41 coding downstream 729791 36290894 ~ 36323530 (-)
LOC110535635 LOC106578687 coding downstream 764961 36267127 ~ 36288360 (-)
LOC110535650 LOC106578672 coding upstream 8773 37085679 ~ 37109283 (-)
LOC110535659 LOC106578663 coding upstream 488439 37565345 ~ 37574881 (-)
LOC110535660 LOC106578660 coding upstream 524533 37601439 ~ 37711124 (-)
LOC118937347 LOC106578660 coding upstream 634282 37711188 ~ 37719715 (-)
LOC118937348 NA coding upstream 644663 37721569 ~ 37735221 (-)
G974527 NA non-coding downstream 142 37053092 ~ 37053179 (-)
G974506 NA non-coding downstream 52419 36998246 ~ 37000902 (-)
G974504 NA non-coding downstream 52953 36994845 ~ 37000368 (-)
G974503 NA non-coding downstream 53190 36984243 ~ 37000131 (-)
G974502 NA non-coding downstream 70604 36982358 ~ 36982717 (-)
G974567 NA non-coding upstream 54006 37130912 ~ 37134711 (-)
G974586 LOC101448051 non-coding upstream 148186 37225092 ~ 37226538 (-)
G974634 NA non-coding upstream 162473 37239379 ~ 37239693 (-)
G974637 NA non-coding upstream 165488 37242394 ~ 37242699 (-)
G974821 NA non-coding upstream 463329 37540235 ~ 37543201 (-)
G972383 LOC106578698 other downstream 1180063 35872669 ~ 35873258 (-)
LOC110535616 LOC106578707 other downstream 2210809 34810223 ~ 34978953 (-)
G971137 NA other downstream 2214395 34836972 ~ 34838926 (-)
G970066 NA other downstream 3178049 33874814 ~ 33875272 (-)
G968868 NA other downstream 4385831 32666752 ~ 32667490 (-)
G974622 LOC106578671 other upstream 136978 37213884 ~ 37214896 (-)
G974756 NA other upstream 337472 37414378 ~ 37415635 (-)
LOC110535661 LOC106578659 other upstream 662969 37735411 ~ 37809752 (-)
G975103 LOC106578726 other upstream 964500 38041406 ~ 38045662 (-)
G975110 NA other upstream 1000945 38077851 ~ 38078527 (-)

Expression


Co-expression Network