LOC110535665 (LOC106578656)


Basic Information

Item Value
gene id LOC110535665
gene name LOC106578656
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 37847147 ~ 37850426 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620811.2
cctgccacatacctcttgtgtctgagccgttgaattgagattagcttagcttgtttgattgccttgcggagggaatgtGCCTAATAAAGCCGGCATTCAATTCTATGAGTAACTTTATGTGAGGTGTCTCATTGAACAAATGCAAGTAATCTCTGGCTGACATGTTTTATAGAGTATACCACAGGTTCCCCAAAAAGAGAGACAAGTTTCTCAATTGAATGCACACAAAGTTGATTAGAATTGTACACTGGTATTCTGTATGCTAGAAAAAACAGAAACTACTGGCGTAGGCAAAGCTATCTATCGACATGTGACATTGTGGTTAAGACGACAAATCCTAAAAGCTGGTGACGATGAGACGGGTAGCAGTATTCATCAAGGGCTAGCGGCGTCtactcagagaaagagagacagcatTGAAGTCTCATCACTGACTGGGTAAAATGGAGTTGCCGTTGTTCACTGCACTCCCAACTGATGAAACTCTTTCTGGAGATTACACAGACGACTATGGGACCTTCACTGAGACCCCAGGGGGGCTATGTGACAAGAGCTGGGTGAGGGAGTTTCGGGGTCTCTACGAACCCCCGCTGTTCTGGCTCATCTTCATCTTGGGCGCTGTGGGCAACCTGATGGTGGTCTTCATCTTTACCACGGTGCGCCACCGCCTCAAGACCATGACGGACGTCTACCTACTCAACCTGGCCGTGGCCGACCTTCTCTTCCTGGGCACGCTGCCTTTCTGGGCCGCCGACGCCACCAAGGGCTGGATGTTCGGCCTGAGCCTCTGTAAGCTCCTCTCGGCCATCTACAAGATCAACTTCTTCAGCAGCATGCTGCTGCTCACATGTATCAGCATGGACCGCCATGTGGCTATCGTCCAGGTTACCAAGGCCCACAACCAGAAGAACAAGAGGCTGTCTGTCAGCAAGCTGACCTGCCTAGCTGTCTGGATCATCTCAGGCCTCCTGGCCCTGCCTGAGTTAATCTTCGCCCAAGTCAAGCCTGACCGTAGGGGCAATTCCTTCTGTGTCTTGGTCTACCCAAACAACCTCTTCAATCGCACCAAGATCCTGGTGCTCGTTCTGCAGATCTGTGTGGGGTTTTGCCTGCCGCTGCTGGTCATGGTGCTGTGCTACTCTGTCATCATCCGCACCCTGCTGCAGGCCAAGAGTTTCGAGAAGCACAAGGCACTCAGGGTCATCTTCGCTGTGGTGGCTGTGTTTGTCCTCTCCCAGCTGCCGTACAATGGGCTACTGGTGGTCGACGCCACGCAGGCCGCCGACACCACCATTACGGACTGTGCTGTATTGGAACTTTTCGATGTCGCTGGTCAAATTTCCAAGAGTCTGGCATACACCCACGCCTGCATTAACCCCTTCCTGTACGTGTTCATTGGCGTTCGCTTCCAGAAGGATCTGCTGAGGCTGCTGAAGCTGTGCACCTGCGGCCTGAGCCAAGGAGGTGTCAGTAAGCTGCAGGCCGTCCCCAACCGCGCTTCTGTCATGTCTGACACTGAGACTACCTGTGCCCTCGCCTTGTAATCGTGCCCACTGAagccacacacacattcaacatCACTTCAGATCACATAATTTCATTGGTAAACACCTCATTCCGCACCTTTCTTCTTCCATGATATCATATGCTGCTAGGTGGGACACTCCCACCTGTTGCATCCTGAGTACATTGGTATTTTACCAGTATAGAAATGTAATTACCCTGTGCTGACAATCAAGAAACATGCTATACATGAAAAGCATACCATTCTCTAAGACATTGTATTAAAGTGTAAATTattgtatatatacactgaacaaaaaataaacgcaaca

Function

NR:

description
C-C chemokine receptor type 9-like

GO: NA

KEGG:

id description
K04184 CCR9, CDw199; C-C chemokine receptor type 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620811.2 True 1835 mRNA 0.50 3 37847147 37850426

Neighbor

gene id symbol gene type direction distance location
LOC118937439 NA coding upstream 3640 37836986 ~ 37843507 (+)
lztfl1 LOC106590188 coding upstream 11807 37813177 ~ 37835340 (+)
LOC110535658 NA coding upstream 303957 37542062 ~ 37543202 (+)
LOC110535657 LOC106578664 coding upstream 308288 37522651 ~ 37538859 (+)
LOC110535656 LOC106578665 coding upstream 333812 37384483 ~ 37513335 (+)
LOC110535015 LOC106578726 coding downstream 16289 37866715 ~ 38045713 (+)
LOC110535669 impa1 coding downstream 348700 38199126 ~ 38217258 (+)
LOC110535674 LOC106578734 coding downstream 501145 38351571 ~ 38497111 (+)
LOC110535673 enkur coding downstream 775835 38626261 ~ 38631703 (+)
LOC118937440 NA coding downstream 982736 38833162 ~ 38834976 (+)
G973995 NA non-coding upstream 70256 37752703 ~ 37776891 (+)
G973853 NA non-coding upstream 281175 37563105 ~ 37565972 (+)
G973772 NA non-coding upstream 401447 37348459 ~ 37445700 (+)
G974074 NA non-coding downstream 36534 37886960 ~ 37887426 (+)
G974090 NA non-coding downstream 57417 37907843 ~ 37908175 (+)
G974095 NA non-coding downstream 64533 37914959 ~ 38005906 (+)
G974112 NA non-coding downstream 86306 37936732 ~ 37939705 (+)
G974165 NA non-coding downstream 167175 38017601 ~ 38017823 (+)
G973918 NA other upstream 167779 37651138 ~ 37679368 (+)
G972725 NA other upstream 1596561 36249973 ~ 36250586 (+)
G970489 LOC106578645 other upstream 3324807 34516457 ~ 34522340 (+)
G974184 NA other downstream 207372 38057798 ~ 38063100 (+)
G976017 NA other downstream 1207250 39057676 ~ 39058011 (+)
G978255 NA other downstream 2917410 40767836 ~ 40768229 (+)
G978396 NA other downstream 3152650 41003076 ~ 41016088 (+)

Expression


Co-expression Network