LOC110535674 (LOC106578734)


Basic Information

Item Value
gene id LOC110535674
gene name LOC106578734
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 38351571 ~ 38497111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620823.2
CTCGACCTCTGTGGTGAAGAAGCAAGCTTGCCTGTCactattgacccccccccctatcCACCTTCAATGTCAAATCTCTGTCACCAAAGTGGAGAGAATTACCAAGGCTTTTGTATGCAATCAAGACCAAGGAACAGCAGCACTAGTCCTATACACATCGCTTGACTTTTTCCCTTTTCTACAATCAAAGCTCTCTTCTTCAAGGTTATATCCTCtttgtcttttttattttttggaaAACATTGGGTCAAGAGGACAGTGGGAAGCAGGCCCTGAGGATTTTTACATTTTCTCCTCCACTGTGTGATTTTATTCTCTCCTGTGCTTGGTGCTTGTTGGAGGGGGCATACATGAGGTGGTGTGGCTCAGGAAGCTTGGGGAGAGCAGGAACTCACCTTGCTCTGCTGCTACCCCTCTGGGAGCTGGGCTGCTGGGGGTTGATCTCCGCCCCTGGGGGGCAGAACCAGGCGCAGCACACTACTGAAGGCCCCTGGGAGATGCTTCGCAGGCACAAACGCAGCTGGGTATGGAATCAGTTTTTTGTCCTGGAGGAGTACACAGGCGAAGAACCTCTTTATGTTGGCAAGCTCCACTCAGACGTGGACAAAGGGGATGGCAAGGTGAAATACGTGCTCTCAGGAGAGGGCTCCACCTCCATCTTCACCATCGACGAGAACACAGGTGACATCCACGCCACCAAGCGTCTGGACCGGGAGGAGCAGGCCTATTACACACTTCAGGCCCAGGCCGTGGACCGGAtcaccaacatccctgtggagcCCAGGTCAGAGTTCCTGGTCAAGGTCCAGGACATCAATGACAATGAGCCCAAGTTCATGGACAGGCACTATATGGCCGGGGTACCGGAGATGTCAGCATTGGgaacaatggtggtccAAGTGGCAGCCACAGATGCAGATGATCCCACATATGGGAACAGTGCCAGGGTGGTCTACAGCATCATCAGCGGACAACCCTACTTCTCAGTGGAACCAAAAACAGgcaTCATCCGGACAGCGCTGCCCAACATGGACCGAGAGATGAAAGACCAATACGTTTTGGTCATCCAGGCCAAAGACATGGTGGGCCAGATGGGCGGCCTTTCAGGCACCACCTCTGTCACGATCACTCTCACCGACGTCAACGACAACCCGCCACACTTCTCTCGCAAGAACTATCAGTACACTGTGCTGGAGTCCTTGCCTGTGGCATCCGTGGTGGCCAGGGTCAAGGCTGTGGATGCAGACATAGGCCCCAACGCAGAGATGGAGTATAGGATCATTGAGGACGGACCTGGGTTGTTCAACATCACCACAGATGAGGACACGCAAGAGGGCGTTATCATCCTTCAAAAGCCGTTAGACTTTGAGACCAAGAACAGCTTTAATGTGCGAATCGAAGCCACCAATCGGAACATCGACCCTGCGTTCGTGCACCTGGGTTCGTTCAGCGACACAACGTCGGTCAAGGTGACGGTGAAGGACGTGAACGAGTCGCCTGTGTTCTCGACACAGCTCAGCAGGATGGTGATCTCTGAGGACGCCAAAGTTGGCACCTCCATCGGGAGGGTCTCCGCGCACGATCCGGACACCTCCAACAGTGCCATCAGGTACTCCATAGATAGAAACACAGACCTGGAGCGTATCTTCAATGTGGATGCTCTGAGTGGGGTCATCAGTACTGCCAAGCCCCTGGACCGAGAGGTCAACTCTGTCCACAACCTTACCATACTCGCCATGGAGAGCCAGGATCCAACAAAGATTGAAAAAGGTTTTGTGGCCATCACAGTACTGGACATCAATGACAACGCTCCGGTGTTTGCCATCGCGTATGAGACCCTCCTATGTGAGAATGCAGCTCCTGGACAGGTCATCCAGACCATCAGTGCCGTGGACAAGGATGAGCCTCCCAGTGGTCATCTCTTCTACTTTGCCCTAACTGCGTCTGTGGTTAGCAACAGCAACTTCACTCTCCGAGACAACAAAGACAACACGGCATCTATCGTAACGAAACGTGGAGGGTTTCGTAGACAGGAGCAGATGCTGTATCGACTGCCCGTGTTGATTGTCGACAATGGAAGCCCTGCCCTCAGTAGCACCAACACCTTATCAGTGAACGTGTGTGACTGTGACTCGGACGGTGTGGCCCAATCGTGTGGAGCCATGCCCTACACACTTCCTGCTGGCCTCAGTACAGGGGCCCTGGTCGCAATTCTGGGATGCATCATTACACTGCtggTGATGGTGCTGATGATCATGTCGATGCGTCAGAGGAAGAAGGAGCCATTGattctggaggaggagagggacgtGAGGGAGAACATCGTCCGCTACGACGAtgaaggtggaggagaggaagacacgGAGGCCTTCGTCATGGTAGCCCTCCGCAACCTCAACGTCATCATAGACCCCAAGGTCCGGCGAGACGTCATCCCTGACACCCACACCTTCTTCCCCTACCCAACGTCCTCCTCCTCGCAGCCTGTCCACAATACCCTGCCAGACAATGTGGTGTTCCGAGAGTTCATCTGGGACCGCCTGAAAGATGCAGATGTTGAGCCTTCAGCTCCGCCATACGACTCTTTGCAGACGTACGCCTTTGAGGGGAGTGGCTCTGTAGCTGAATCCTTAAGCTCCTTGGAGTCGCTAAGTACAGACTCAGAGCAGAACTATGACTATCTCAGCACCTGGGGGCCACGTTTCAAGAAGCTAGCCGACCTGTATGGCAACAGCGACGGCAATAGCAATGGTAACAGCATGCTGTCATAGCCAAAACTTTCCTGAACTTACACAACAAATATGTTATGATAGTCTGGGGTGAGAGTCTGTGAAAACAAAGTGAGATAGGAAAAATACAAGTGACTTCAAAGGTTAGGTTTGTTTATGTGCCTTGGATTTTGGATTTTCAAAAGGGGTGACTTGGCAAGTTTTGATAAGTCATTTCAAAAGTGAGTTGACTGAAGAGCAAAAACATTAAAAGGTTTCATAGTTGTGCTGAGGTCCAGCGTACATGATAGGCTACAATATATTTATGTAGAGAAACCTGTTCTCTCAATCCTGACATGGGCACAGACCCAGCAGTCTTGCATTGATGCATTCTCTTGCTCttttcgtttaaaaaaaaaacttttctccTGAAGTGCCCAGTCCCGGCCGGCTAATCGGTAGAGTAGTCACTCAACTATTAATTTGAAAGTCATGAAGagtgtcaatattttgtttttgttctgTGTTTTTCACAGAGactatgaagaaaatgtattaagTCAGACTCACAGAGAAAAAacaatcatcaaatcaaattttattggtcacatacacatatttaacagatgcgggtgtagagaaatgcttgtgttcctagctccaacagtgcagtaatatctaacaaatcacaacaatacacacaaatctaaaaataaaataataaggacaagcaatgttggagtggcattgactaaaatacagtagaatagaatacagtatatacatatgaaatgagtaaagcactATGTAAACAGTATTCAAGTGATTAGCGTTCCATTAttcaagtgaccagtgattccatgtctctGAATATGGGGCAGCAGCCGGCTAGTAAtggttatttaacagtctgatggccttgagatagcggggtgaacaggccattgttacaggtggttgatgtccttgatgacctttttggccttcctgtgacaacggGT
>XM_036935435.1
CTCGACCTCTGTGGTGAAGAAGCAAGCTTGCCTGTCactattgacccccccccctatcCACCTTCAATGTCAAATCTCTGTCACCAAAGTGGAGAGAATTACCAAGGCTTTTGTATGCAATCAAGACCAAGGAACAGCAGCACTAGTCCTATACACATCGCTTGACTTTTTCCCTTTTCTACAATCAAAGCTCTCTTCTTCAAGGTTATATCCTCtttgtcttttttattttttggaaAACATTGGGTCAAGAGGACAGTGGGAAGCAGGCCCTGAGGATTTTTACATTTTCTCCTCCACTGTGTGATTTTATTCTCTCCTGTGCTTGGTGCTTGTTGGAGGGGGCATACATGAGGTGGTGTGGCTCAGGAAGCTTGGGGAGAGCAGGAACTCACCTTGCTCTGCTGCTACCCCTCTGGGAGCTGGGCTGCTGGGGGTTGATCTCCGCCCCTGGGGGGCAGAACCAGGCGCAGCACACTACTGAAGGCCCCTGGGAGATGCTTCGCAGGCACAAACGCAGCTGGGTATGGAATCAGTTTTTTGTCCTGGAGGAGTACACAGGCGAAGAACCTCTTTATGTTGGCAAGCTCCACTCAGACGTGGACAAAGGGGATGGCAAGGTGAAATACGTGCTCTCAGGAGAGGGCTCCACCTCCATCTTCACCATCGACGAGAACACAGGTGACATCCACGCCACCAAGCGTCTGGACCGGGAGGAGCAGGCCTATTACACACTTCAGGCCCAGGCCGTGGACCGGAtcaccaacatccctgtggagcCCAGGTCAGAGTTCCTGGTCAAGGTCCAGGACATCAATGACAATGAGCCCAAGTTCATGGACAGGCACTATATGGCCGGGGTACCGGAGATGTCAGCATTGGgaacaatggtggtccAAGTGGCAGCCACAGATGCAGATGATCCCACATATGGGAACAGTGCCAGGGTGGTCTACAGCATCATCAGCGGACAACCCTACTTCTCAGTGGAACCAAAAACAGgcaTCATCCGGACAGCGCTGCCCAACATGGACCGAGAGATGAAAGACCAATACGTTTTGGTCATCCAGGCCAAAGACATGGTGGGCCAGATGGGCGGCCTTTCAGGCACCACCTCTGTCACGATCACTCTCACCGACGTCAACGACAACCCGCCACACTTCTCTCGCAAGAACTATCAGTACACTGTGCTGGAGTCCTTGCCTGTGGCATCCGTGGTGGCCAGGGTCAAGGCTGTGGATGCAGACATAGGCCCCAACGCAGAGATGGAGTATAGGATCATTGAGGACGGACCTGGGTTGTTCAACATCACCACAGATGAGGACACGCAAGAGGGCGTTATCATCCTTCAAAAGCCGTTAGACTTTGAGACCAAGAACAGCTTTAATGTGCGAATCGAAGCCACCAATCGGAACATCGACCCTGCGTTCGTGCACCTGGGTTCGTTCAGCGACACAACGTCGGTCAAGGTGACGGTGAAGGACGTGAACGAGTCGCCTGTGTTCTCGACACAGCTCAGCAGGATGGTGATCTCTGAGGACGCCAAAGTTGGCACCTCCATCGGGAGGGTCTCCGCGCACGATCCGGACACCTCCAACAGTGCCATCAGGTACTCCATAGATAGAAACACAGACCTGGAGCGTATCTTCAATGTGGATGCTCTGAGTGGGGTCATCAGTACTGCCAAGCCCCTGGACCGAGAGGTCAACTCTGTCCACAACCTTACCATACTCGCCATGGAGAGCCgtaagagcacacacacacaactttccaCATCAGGCCTCAAAATCAGACTAGTCATACTGGACATCAATGACAACGCTCCGGTGTTTGCCATCGCGTATGAGACCCTCCTATGTGAGAATGCAGCTCCTGGACAGGTCATCCAGACCATCAGTGCCGTGGACAAGGATGAGCCTCCCAGTGGTCATCTCTTCTACTTTGCCCTAACTGCGTCTGTGGTTAGCAACAGCAACTTCACTCTCCGAGACAACAAAGACAACACGGCATCTATCGTAACGAAACGTGGAGGGTTTCGTAGACAGGAGCAGATGCTGTATCGACTGCCCGTGTTGATTGTCGACAATGGAAGCCCTGCCCTCAGTAGCACCAACACCTTATCAGTGAACGTGTGTGACTGTGACTCGGACGGTGTGGCCCAATCGTGTGGAGCCATGCCCTACACACTTCCTGCTGGCCTCAGTACAGGGGCCCTGGTCGCAATTCTGGGATGCATCATTACACTGCtggTGATGGTGCTGATGATCATGTCGATGCGTCAGAGGAAGAAGGAGCCATTGattctggaggaggagagggacgtGAGGGAGAACATCGTCCGCTACGACGAtgaaggtggaggagaggaagacacgGAGGCCTTCGTCATGGTAGCCCTCCGCAACCTCAACGTCATCATAGACCCCAAGGTCCGGCGAGACGTCATCCCTGACACCCACACCTTCTTCCCCTACCCAACGTCCTCCTCCTCGCAGCCTGTCCACAATACCCTGCCAGACAATGTGGTGTTCCGAGAGTTCATCTGGGACCGCCTGAAAGATGCAGATGTTGAGCCTTCAGCTCCGCCATACGACTCTTTGCAGACGTACGCCTTTGAGGGGAGTGGCTCTGTAGCTGAATCCTTAAGCTCCTTGGAGTCGCTAAGTACAGACTCAGAGCAGAACTATGACTATCTCAGCACCTGGGGGCCACGTTTCAAGAAGCTAGCCGACCTGTATGGCAACAGCGACGGCAATAGCAATGGTAACAGCATGCTGTCATAGCCAAAACTTTCCTGAACTTACACAACAAATATGTTATGATAGTCTGGGGTGAGAGTCTGTGAAAACAAAGTGAGATAGGAAAAATACAAGTGACTTCAAAGGTTAGGTTTGTTTATGTGCCTTGGATTTTGGATTTTCAAAAGGGGTGACTTGGCAAGTTTTGATAAGTCATTTCAAAAGTGAGTTGACTGAAGAGCAAAAACATTAAAAGGTTTCATAGTTGTGCTGAGGTCCAGCGTACATGATAGGCTACAATATATTTATGTAGAGAAACCTGTTCTCTCAATCCTGACATGGGCACAGACCCAGCAGTCTTGCATTGATGCATTCTCTTGCTCttttcgtttaaaaaaaaaacttttctccTGAAGTGCCCAGTCCCGGCCGGCTAATCGGTAGAGTAGTCACTCAACTATTAATTTGAAAGTCATGAAGagtgtcaatattttgtttttgttctgTGTTTTTCACAGAGactatgaagaaaatgtattaagTCAGACTCACAGAGAAAAAacaatcatcaaatcaaattttattggtcacatacacatatttaacagatgcgggtgtagagaaatgcttgtgttcctagctccaacagtgcagtaatatctaacaaatcacaacaatacacacaaatctaaaaataaaataataaggacaagcaatgttggagtggcattgactaaaatacagtagaatagaatacagtatatacatatgaaatgagtaaagcactATGTAAACAGTATTCAAGTGATTAGCGTTCCATTAttcaagtgaccagtgattccatgtctctGAATATGGGGCAGCAGCCGGCTAGTAAtggttatttaacagtctgatggccttgagatagcggggtgaacaggccattgttacaggtggttgatgtccttgatgacctttttggccttcctgtgacaacggGT

Function

NR:

description
cadherin-7-like

GO: NA

KEGG:

id description
K06799 CDH7; cadherin 7, type 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620823.2 False 3709 mRNA 0.50 11 38351571 38497111
XM_036935435.1 True 3721 mRNA 0.50 11 38351571 38497111

Neighbor

gene id symbol gene type direction distance location
LOC110535669 impa1 coding upstream 134313 38199126 ~ 38217258 (+)
LOC110535015 LOC106578726 coding upstream 305858 37866715 ~ 38045713 (+)
LOC110535665 LOC106578656 coding upstream 501145 37847147 ~ 37850426 (+)
LOC118937439 NA coding upstream 508064 37836986 ~ 37843507 (+)
lztfl1 LOC106590188 coding upstream 516231 37813177 ~ 37835340 (+)
LOC110535673 enkur coding downstream 129150 38626261 ~ 38631703 (+)
LOC118937440 NA coding downstream 336051 38833162 ~ 38834976 (+)
LOC118937441 NA coding downstream 341056 38838167 ~ 38840060 (+)
LOC110535679 LOC106580199 coding downstream 454181 38951292 ~ 38954353 (+)
LOC110535680 LOC106580198 coding downstream 492743 38989854 ~ 39004586 (+)
G974240 NA non-coding upstream 177848 38154323 ~ 38173723 (+)
G974229 NA non-coding upstream 208307 38143034 ~ 38143264 (+)
G974191 NA non-coding upstream 273208 38077812 ~ 38078363 (+)
G974187 NA non-coding upstream 277610 38073627 ~ 38073961 (+)
G975372 NA non-coding downstream 5649 38502760 ~ 38547774 (+)
G975412 NA non-coding downstream 78615 38575726 ~ 38580510 (+)
G975600 NA non-coding downstream 149208 38646319 ~ 38646749 (+)
G975605 NA non-coding downstream 188571 38685682 ~ 38726531 (+)
G975631 NA non-coding downstream 244621 38741732 ~ 38742160 (+)
G974184 NA other upstream 288471 38057798 ~ 38063100 (+)
G973918 NA other upstream 672203 37651138 ~ 37679368 (+)
LOC110535658 NA other upstream 808369 37542062 ~ 37543202 (+)
G976017 NA other downstream 560565 39057676 ~ 39058011 (+)
G978255 NA other downstream 2270725 40767836 ~ 40768229 (+)
G978396 NA other downstream 2505965 41003076 ~ 41016088 (+)
G979689 NA other downstream 3581381 42078492 ~ 42078855 (+)
G979965 NA other downstream 4031409 42528520 ~ 42533308 (+)

Expression


Co-expression Network