XLOC_028385


Basic Information

Item Value
gene id XLOC_028385
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 919752 ~ 921761 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057978
ATAAATGTTTTGTACAGTGTAAATCGTTCTCACATTTGTCACCAACAGAGACATTTTCATGGTAACCGCTCTCATAGTGTTAAGAAAATGTTCTGAGACAACATTAAAGCAGCTTCCTTTAATGCGGTTTGTACCTGAACGTTCTAAaaactgttaaaagaacattatAAGAAGAATGTCACTTTGATGTTATAGAACATTCTAAAAGCGGAATACATTCTGACATCACTACTGGAATCTCTTTATGATGATAGTGTATTGCACACTGTTGAAAATACCTGCTCatgaacagtttccgtatttAGTGATTCACATGTATTTTTGGGTTtatttgtgaattgcattatgggatgcttatctctgctctgtccacttctgatggtgaaaattcaactccacagtttaacaaagtgacttttattgaccttttagtagtttgaaataatataatgtaaaaaaaaaaaaataatacctagataaataagtctgtaaaatagcacAAAATGTGCTGCAgattattacaaggtgtttgtagtgtaatatacaacaccaccccagacaatatagcactgtaGACTATTAAACATGTTCAGAAaagtccctttttttttttttttttacttttcatggTTAAAAGATGTAAGGAAGATCAAAATCCCGTAATGTAATCcagaagcagaaataaatgggggaaataaaaaaaataaaataaaaacatgaatcgcaaaatatggaaaattttacagacattttttacaatgtacataaTAAGCATAATACATTCTTATGCGTGTACATAATAAATTCTTTTAATGTTGAGAAAATGTTCTGGAAACAACATTAATGTTAACCCatggattattattatgattattatttacacACTAAAACCTAAATAATGATGTGTCATGATCAGAAGTAAGTAACTAATGTTAGGCTACATCAGCGAACGCTACAAGCAAACCAAAGTTAGATCAATAGATGTAGACATATTGGTTAGTTAACAAGGAGTTGTCAAACCTTAGCTTTCCATTTGAATTAGTGATAATTAGCATGTTTTGGGGGTTCATGAAGATAGtctattctgaaatattttaagtAGTACATTTTAATTAGACATGTTGGGGTTCATCTCTTTGTAGATAACAAATGACAAAGTGCTGTAGGTGAGATTTGTGTGACAAGCCAGCGCCTTCATGGTtgtgttaattaaaataaattaacaaactacGGTTGTAAAGGTGAAGTGACAGGAACCGGAAGTGTCTGTGGCAGCGCGCGGTTAAGGTAaacaaaagatttgtttaaatattttaaaaatgtttcagagTCCTCGAGGGaaagctaataataatagtaacgttaataacaacaacaacagcctaataataatgatacaaaatCAGAAACAAAGTGGCCTACATAGTTTTATATTAGCTGAACAGCTGAAACAGTTTCTAAAAACAGAAGAAGCATACAGACGCGTATTTACATCCAGATTATACTGAATCCCACGACAAACGGTTATAAAACAATCAGAAATTCAACTATTAGCTTAACAGCACATCCATTCATTAGCATAAGCATTATCAGGCAGAGGAATTATTGCTCATTATCGAAATCCTCTGTGTTTATGAATAAATCAATGCTAGAGACTCTAAATAAAACACCACTAGATAAACAAATCTGCAACACATTCGCGTTGTTTTCAAATGTGGAAATATGAGTTATTTAAAAGGAGAATCAGCGGAGATCAGCAGAATATAACAACATATGAACAGTTTATGTTCATCACAAGTGTGTTTAAAGAGAAGTAATCTGACTGAATTATTTATCCACAGACCAAATTCAGTGGTGAAGCGGCGTCCCCTGCTGCCCACTATAGAAATGAATACCTAGAGATGTTCTCCCATGTTTTTGTCTGAAAAAAGTATAGTCGAAGTAGTAAACGTTTATACAAGATGTAGCATTTAAacagtgtatacagttgaagtcagaattgtgtccccc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057978 True 2010 lncRNA 0.33 1 919752 921761

Neighbor

gene id symbol gene type direction distance location
XLOC_028384 mrap2b coding downstream 10931 905483 ~ 908821 (-)
XLOC_028383 NA coding downstream 15730 899962 ~ 904022 (-)
XLOC_028382 crybg1b coding downstream 29532 861444 ~ 890220 (-)
XLOC_028381 sobpb coding downstream 61318 818928 ~ 858434 (-)
XLOC_028380 dpysl5b coding downstream 103881 798696 ~ 815871 (-)
XLOC_028386 sim1b coding upstream 7796 929557 ~ 948842 (-)
XLOC_028387 atp23 coding upstream 36290 958051 ~ 965267 (-)
XLOC_028388 naga coding upstream 60267 982028 ~ 992148 (-)
XLOC_028389 NA coding upstream 89199 1010960 ~ 1013095 (-)
XLOC_028390 NA coding upstream 92787 1014548 ~ 1015896 (-)
XLOC_028375 CU855889.2 non-coding downstream 185405 701612 ~ 734347 (-)
XLOC_028376 NA non-coding downstream 187268 723830 ~ 732484 (-)
XLOC_028373 NA non-coding downstream 522933 393551 ~ 396819 (-)
XLOC_028362 NA non-coding downstream 800558 116322 ~ 119194 (-)
XLOC_028391 NA non-coding upstream 100555 1022316 ~ 1023700 (-)
XLOC_028392 NA non-coding upstream 107075 1028836 ~ 1036046 (-)
XLOC_028393 NA non-coding upstream 132900 1054661 ~ 1259741 (-)
XLOC_028394 NA non-coding upstream 301403 1223164 ~ 1234236 (-)

Expression


Co-expression Network