LOC118937441


Basic Information

Item Value
gene id LOC118937441
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 38838167 ~ 38840060 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034791.1
CAAGTGGCCTAATATGTTTGTGACGTTCCATGGAACCCACGGTATTGTTTAAAACTAGATTCTGATTGGCTTGCAGGTCATTCTACAGTGTAAATTataaatgaaaatgtgtttttatatcAGTGTTACAGAATCACAATACCGAGCGTGTCTCAACCCGTACCACGCTTTTATCTGCCTAAAGGTATCTTCACGCACGACTGGATAGGCCTTTTGGATACGCTTGTCCAAGATTCTTCCAGGCCCAAGACATAAAGTCTCCTGAAAGCTGTTTAGCAATCATTCCATTGCTGACCCATTGGAAGGTAATCACATACATGATTGGCTTCATCTAGAATCATGGATACCTTTCATACCTTCTCATCACAAGTTGGAACTAGTGGTCAACATTGGGACAATGCAGCCATAAATAACATGGACCAATTTTTTCATGGAGTGAGCAAGACCTGCCAGCAGAGCTCACTGGAGCAGGGAGACATGCCGTCATCCTTTTGGTGCCTGACAAAGTACACTTTTTTTCTTCTAAATAACACTATGGTAACATCTTCTGCACAAAGTTACATTCCTAATTAGATTGGTGTTAAGTGAGAACGAATCATAAAGATGGTCCAATGGGCATGGTCTGAAGCCTCTCGTCATCTCAGTATGTTGAACCACCTGATTTCTTGCAGGCTTGAGATTCAGATCCTGCTGAACGATGTTAAGCATTCGATTAACCACGTGCAGGGGACGCTGAACACCATGCAGGGGCAGTGTATTGAGTTGTAGACTGCCAtgtctaaagtagtgtcagatGAGTCTCAGATACAGAAGAATAAGTCTATGATGGTAGGGTGATAATGATTGTGATGGTGGTTATAATAATGATGACTTGCGGTACCCCACCCTAAGGGCAGTAAATCATTGGATCTGATTAATTAAATTCAATGCAATTCAATCTTTGAGGACTgcaaccatagaaatacaattactTTCCACTAATAATAAGCTATTGTCAACTTCCCGTCTATGCTTATCTTGCTCATTGCTCATTGCTATGAGTGCAACTATTATTGATTTCTCACAGAAAAATAATTTGGTTGCAAATGTACCTGGGGCCATGTAAATAATTGTTAGGCTACTCATTTTGAATCCACCGGTGGCAACTTGTGTGACCATAAAAGTCTGTGTGCGACTGGGCACAGTAAAATCATTTGGTTACTGTGGCGAAtttgccagtggcgaatttgccaatcttggtgttctctggcaaatgccaaatgtcctgtgctgtaagcaca

Function

NR:

description
uncharacterized protein LOC110505271 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034791.1 True 1280 mRNA 0.41 4 38838167 38840060

Neighbor

gene id symbol gene type direction distance location
LOC118937440 NA coding upstream 3191 38833162 ~ 38834976 (+)
LOC110535673 enkur coding upstream 206464 38626261 ~ 38631703 (+)
LOC110535674 LOC106578734 coding upstream 341056 38351571 ~ 38497111 (+)
LOC110535669 impa1 coding upstream 620909 38199126 ~ 38217258 (+)
LOC110535015 LOC106578726 coding upstream 792454 37866715 ~ 38045713 (+)
LOC110535679 LOC106580199 coding downstream 111232 38951292 ~ 38954353 (+)
LOC110535680 LOC106580198 coding downstream 149794 38989854 ~ 39004586 (+)
LOC110535681 mapkapk5 coding downstream 359676 39199736 ~ 39237016 (+)
LOC110535687 LOC106580186 coding downstream 642435 39482495 ~ 39520766 (+)
LOC110535016 NA coding downstream 786909 39626969 ~ 39633152 (+)
G975632 NA non-coding upstream 80100 38742791 ~ 38758067 (+)
G975631 NA non-coding upstream 96007 38741732 ~ 38742160 (+)
G975605 NA non-coding upstream 111636 38685682 ~ 38726531 (+)
G975600 NA non-coding upstream 191418 38646319 ~ 38646749 (+)
G975412 NA non-coding upstream 257657 38575726 ~ 38580510 (+)
G975723 NA non-coding downstream 35797 38875857 ~ 38877069 (+)
G975740 NA non-coding downstream 63136 38903196 ~ 38906766 (+)
G975747 LOC106582599 non-coding downstream 77511 38917571 ~ 38922153 (+)
G975748 NA non-coding downstream 80292 38920352 ~ 38923238 (+)
G976016 NA non-coding downstream 216992 39057052 ~ 39057433 (+)
G974184 NA other upstream 775067 38057798 ~ 38063100 (+)
lztfl1 LOC106590188 other upstream 1002832 37813177 ~ 37835340 (+)
G973918 NA other upstream 1158799 37651138 ~ 37679368 (+)
LOC110535658 NA other upstream 1294965 37542062 ~ 37543202 (+)
G976017 NA other downstream 217616 39057676 ~ 39058011 (+)
G978255 NA other downstream 1927776 40767836 ~ 40768229 (+)
G978396 NA other downstream 2163016 41003076 ~ 41016088 (+)
G979689 NA other downstream 3238432 42078492 ~ 42078855 (+)
G979965 NA other downstream 3688460 42528520 ~ 42533308 (+)

Expression


Co-expression Network