LOC110535679 (LOC106580199)


Basic Information

Item Value
gene id LOC110535679
gene name LOC106580199
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 38951292 ~ 38954353 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620839.2
GAGGGCGCAGTTTCTGATCGGGACACAAAACCCTCTACGGTTTTGTTGGATTGGTAAACCTGTTTTAACACGAAATTATAGAGAATGCATTGTCGGAAGGGAGGCTATTTGAGGAGCGCTCGGTGCATCTATCTCATTTCTCACTGAGTTGAAGCAAAGGTTGGGCTCCATTCTAAAGCCAACCTCTCCGCTAAAACACGGCCCAATTTGGAGTGGGGTTGTATATCATGCAGGAAGGATGGAtgAAAACGTCGGATGTATTAGAGGAAGGGTTGGACCTAAAGTGACCGAAAAGGTGTTCTTTGACATCACTGTGGCAGGTCATGAAGTTGGCCGGATTGTGATTGGCCTGTTTGGAGATGTTGTTCCCTTGACTGTGAATAACTTTGTGGCTCTTGCCACAGGGGAGAAAGGATACGGCTACAAAGGAAGTACATTTCACCGGGTGATCAAGGACTTCATGATCCAAGGAGGTGACTTCACAGCTGGAGATGGAAATGGAGGTAGAAGCATTTACGGGAACCAATTTGCTGATGAGAACTTCAAGCTGAAGCACATGGGAGCAGGTTGGGTCAGCATGGCCAACGCAGGCCCAGACACCAACGGCTCTCAGTTCTTCATCACTGCGTCCAGGGCTCCTTGGCTGGACGGGAAGCACGTGGTGTTTGGGAAAATCTTGGAGGGCATGTCTGTGGTTCATACCATCGAGCTCCAAGACACAAATGACCGGAACCTGCCCTACACAGAGTGTGTCATTGTCAACAGTGGGAAGATAGAAGTCAAAGAGCCATTTATTGTGGATGTGGAGGGTTGGTAGGGTTATCACTATGTGTGTTACTGTATTCAAAGAAGTATTATGCAGTTGTTGTTTATGGCTCTCTAATGTGTATACTAACTTTTAACAAAATGAATACAATGAATTCAGTCATTATGAGAAGATGTCATTTACAATTAATATCTTAAAACCATTGTAATTTAGTTTCTTAACCTACACTCATTAACTGCCAAAATGATCAGTATGTCATTTGCACTATCCACTCAGCACTTTGTCATGCTAAGCTGAAACAACTTTTAGTTTTTTACAATGTTGAAAGATTACACAAAGTATATAATACTTCACTTATTTTGACATATC
>XM_021620837.2
GAGGGCGCAGTTTCTGATCGGGACACAAAACCCTCTACGGTTTTGTTGGATTGGTAAACCTGTTTTAACACGAAATTATAGAGAATGCATTGTCGGAAGGGAGGCTATTTGAGGAGCGCTCGGTGCATCTATCTCATTTCTCACTGAGTTGAAGCAAAGGTTGGGCTCCATTCTAAAGCCAACCTCTCCGCTAAAACACGGCCCAATTTGGAGTGGGGTTGTATATCATGCAGGAAGGATGGAtggtaaaaatattttttttctgacATCTTTGATACGCTGAgattattatttgttttgtttCTGCAAGATGGAGCCGCAAATGATATCCTGCTTCGTTTTCTTGGCTTTTGCGTTTTCAGAAAACGTCGGATGTATTAGAGGAAGGGTTGGACCTAAAGTGACCGAAAAGGTGTTCTTTGACATCACTGTGGCAGGTCATGAAGTTGGCCGGATTGTGATTGGCCTGTTTGGAGATGTTGTTCCCTTGACTGTGAATAACTTTGTGGCTCTTGCCACAGGGGAGAAAGGATACGGCTACAAAGGAAGTACATTTCACCGGGTGATCAAGGACTTCATGATCCAAGGAGGTGACTTCACAGCTGGAGATGGAAATGGAGGTAGAAGCATTTACGGGAACCAATTTGCTGATGAGAACTTCAAGCTGAAGCACATGGGAGCAGGTTGGGTCAGCATGGCCAACGCAGGCCCAGACACCAACGGCTCTCAGTTCTTCATCACTGCGTCCAGGGCTCCTTGGCTGGACGGGAAGCACGTGGTGTTTGGGAAAATCTTGGAGGGCATGTCTGTGGTTCATACCATCGAGCTCCAAGACACAAATGACCGGAACCTGCCCTACACAGAGTGTGTCATTGTCAACAGTGGGAAGATAGAAGTCAAAGAGCCATTTATTGTGGATGTGGAGGGTTGGTAGGGTTATCACTATGTGTGTTACTGTATTCAAAGAAGTATTATGCAGTTGTTGTTTATGGCTCTCTAATGTGTATACTAACTTTTAACAAAATGAATACAATGAATTCAGTCATTATGAGAAGATGTCATTTACAATTAATATCTTAAAACCATTGTAATTTAGTTTCTTAACCTACACTCATTAACTGCCAAAATGATCAGTATGTCATTTGCACTATCCACTCAGCACTTTGTCATGCTAAGCTGAAACAACTTTTAGTTTTTTACAATGTTGAAAGATTACACAAAGTATATAATACTTCACTTATTTTGACATATCAAATGTAATCACAGCAGCTGTATGTTGTGAAATGTTAATGAGGTTCCCATTTGTGAACATGTTGCATTGTTATGGTGAGTATGTTTTATTATTTATGAGAAATTAAATTGTGGGGATTAATCTGGAA

Function

NR:

description
peptidyl-prolyl cis-trans isomerase C isoform X2

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K09563 PPIC, CYPC; peptidyl-prolyl isomerase C (cyclophilin C)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620839.2 False 1135 mRNA 0.43 6 38951292 38954226
XM_021620837.2 True 1379 mRNA 0.41 5 38951292 38954353

Neighbor

gene id symbol gene type direction distance location
LOC118937441 NA coding upstream 111232 38838167 ~ 38840060 (+)
LOC118937440 NA coding upstream 116316 38833162 ~ 38834976 (+)
LOC110535673 enkur coding upstream 319589 38626261 ~ 38631703 (+)
LOC110535674 LOC106578734 coding upstream 454181 38351571 ~ 38497111 (+)
LOC110535669 impa1 coding upstream 734034 38199126 ~ 38217258 (+)
LOC110535680 LOC106580198 coding downstream 35501 38989854 ~ 39004586 (+)
LOC110535681 mapkapk5 coding downstream 245383 39199736 ~ 39237016 (+)
LOC110535687 LOC106580186 coding downstream 528142 39482495 ~ 39520766 (+)
LOC110535016 NA coding downstream 672616 39626969 ~ 39633152 (+)
LOC118937442 NA coding downstream 701278 39655631 ~ 39656997 (+)
G975748 NA non-coding upstream 28054 38920352 ~ 38923238 (+)
G975747 LOC106582599 non-coding upstream 29139 38917571 ~ 38922153 (+)
G975701 NA non-coding upstream 37845 38835232 ~ 38913447 (+)
G975740 NA non-coding upstream 44526 38903196 ~ 38906766 (+)
G975723 NA non-coding upstream 74223 38875857 ~ 38877069 (+)
G976016 NA non-coding downstream 102699 39057052 ~ 39057433 (+)
G976024 NA non-coding downstream 107618 39061971 ~ 39062338 (+)
G976054 NA non-coding downstream 132573 39086926 ~ 39087255 (+)
G976055 NA non-coding downstream 133105 39087458 ~ 39087739 (+)
G976074 NA non-coding downstream 151809 39106162 ~ 39106409 (+)
G974184 NA other upstream 888192 38057798 ~ 38063100 (+)
LOC110535015 LOC106578726 other upstream 907962 37866715 ~ 38045713 (+)
lztfl1 LOC106590188 other upstream 1115957 37813177 ~ 37835340 (+)
G973918 NA other upstream 1271924 37651138 ~ 37679368 (+)
LOC110535658 NA other upstream 1408090 37542062 ~ 37543202 (+)
G976017 NA other downstream 103323 39057676 ~ 39058011 (+)
G978255 NA other downstream 1813483 40767836 ~ 40768229 (+)
G978396 NA other downstream 2048723 41003076 ~ 41016088 (+)
G979689 NA other downstream 3124139 42078492 ~ 42078855 (+)
G979965 NA other downstream 3574167 42528520 ~ 42533308 (+)

Expression


Co-expression Network