LOC110535680 (LOC106580198)


Basic Information

Item Value
gene id LOC110535680
gene name LOC106580198
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 38989854 ~ 39004586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620840.2
CCTCGTGCTATGTGATCATTTCTGGTGTTAGGATAGTAAGATGGGTCAGACGGCTGAAATGAAAGAGATGCAGCCAGGGGTGTGGCTGCAGTCTCTCTCAGGGAAACTCAGTCTTGCCTTGAGCTGCAGCATCTCTGACATAACAGTTGTGCCAGTATGCCAGTCATGAACAGGCCAGGaTTTTGGACAGGCTCAGGGTTGAGCAGACTCTTTTCATCTGGGGAACTATGGAACTATGACGGGAATTCTAAGGAACAGCGCTTGTCCAAGCAAGACCTACGTATAGCTAAGGAGCCAAGCTCCTCTCATAGTCATACTCTCAAAGGCTTACCTCGGTCTCAAAGTGTCAGAGTTGAGCTCTGTGCAGGAAAATCGCCTCGGTGTGAGATAGTGGAGCAAGGTGTGCAAATCCGGGAAGATATTCTAACAGgATGTCTGACTAAAGAGAAGATTCAGACACCCAAGTCTCATCCTGCTTACCCTGAGGAAAAGAGATCGCCTGAAAAGAATGGCAATAAAGAAACACTTCCCCCTTTACTCAATGTGGCCTCGTCTCTTGAGAATGTTTCCATATGTCCATCATTCTCAAACACTCCGAAAGCAAAAACAGTCACTGTAAGTTCCATGACAGGATCTTCTTTCCTGTCCAATAGCAAGGAGCTCTTTGAAGACTGCCAGAAGAGGTATGAGGGGCAGAGGAATGCACAGGATCAGGAATTACCAATGACATCCTGTGCTAATCGCGATGCTGTGGACACGGACTTCGCTACAGAGGCGATGTGCGACCCAGTAATTCTCAATGTACAGAACGACCAAAGATCACAAGGTCTATTGCCGTTAAGCAATCATGGCGAGACCAATCACCAGTTAACCAGTACAGGGACTGAGGAGTGTTTGGTATCCCACCCTGGCAGCACCATAATAGAACCTAAAGAAGCTGAACAAACAATGAAGACCAACATATTTGTATCCAACAGAGGAAGTATGTTCAGTGCAACCTATGTCCACAGCACAGGCAATAGTGACACAAAGATGAGTCGTGAAAGCCCCTTGTGTGATGACAGTGTCTCTGAAACAGGGGATGAATTAGATGCCTTTTCTTCCAGCAGTGACTGTCTGACCTACATTGAGGACGAAGAGAAGGCTGTTATAGATGGAACGAGAGGCAGAGGAAACACATGCATTCCACACTTCACCAAAAGGTCAAAAAATGGATCACAAACTCAGCCTTTATGTCTAAATCCAGCAAGGATATACCACTCTTCTTTGAGTAAGCCATTCGCTCAGTCGTGCATTCCACTGGTTTTACAGATGTCCAAACCAGTTACTAGAGGGTGGTCAAAAACAACTGTTTCTGAGGAGGGTCTGTCAGAAATCCTTTCCCCAGTGGATGAGGTTCTGTCCTATGGAAGCTACGAGCTCCCTCCACCTGTTGTGCACTGTGCAGGATATGGGAGTGTTAGCTCCACTCTGCTACCTCCCCAACCTGCTTTTGAGGTGATCACAAGTGAAGAGGAATTCCCGCCTTCTTCCGAAGGAAATTATCTGTGTCTCAAAGAAGATTCATCCATTAACAGTGAGCTTGTTCCTCCTCTCCCTGATGATAAGACACCACATATAAACAACACAAAAAACTCTGGTGAAACTAACAAAGACCTTGCTGAAGGTCAGAATGTTTTTGACAGAACTGAGAACTCCAGCTTGGTTCCAGCGGAAGAGGATGTCACAGACTCGCTCTTCTACTTTGACATTGGCGACAGGGTTCTTGTCTGCCATTCCAGACCTGGTGTGCTGAAATACAAGGGGCCGGCAGCATTCGCTGGTGGCCTTTGGGCAGGTGTGGTGCTGGACAGGCCAGAAGGAAACCACAACGGGACCTATAGACGGGTGAAATATTTCAGATGTGATAGGAACTGTGGTGTTCTGGTCCGAGCGGAGGACATCTCTCCATTACGAGGGACACAAGACAGTGATCTGGATACTGAGGCTGAGGAGGATCCCTTCTCAGATGAAGAACCACCAAACTGCTTGAAATCACAAGAGGATGGATTGAAAGAAGATGAAGCCTCAGGTGGACCACTGGAAGGCAACATAGACGGGGGACAAAATAAACCAATCAATGATCCTTTAACTACTAAAATTACTTATAAAGAGGGACAATTACAAGAGAAATGGTGCCAAAACCCTCAACTTGATTGTTGTAACGAGACACCTGAGGCATCAAGTTCATCCACCCCTATGCCTGTATCATCATTATTTCAAATTGGTTTTGATTCATGCCCCAAAACAGCAGGACACAACATGAGCTCTAGTTTTGACATAAACTCTTGGGTGGAAAGTTTGACTGAGGAGCTGATCCAAGACCTTATAATGGATGCTCTAGAGATAAggatgagaaacagagagaaaggctTGCTCAAAGAGGACAACAAACAAATTGATACAGTAAAGAAGAAAGATGACAGCACAGCAAATAAGCTGTGTTTCATAGAACAGTGGCACGATACTCTCTGCTCTGCAGCTCCTGAGAAGGTTCAAATCCAGCCCCACGACTGTGACATAGTGTACAGACTGGTTGATACTGCCTTGGAAACCCTCTTAGGCCAAGCAAAGAGTACCATGATTTACAACCCAGAAGCACCAGGCTATATCATCGACGAAGAGAGTGTCAGAGTTTACGGACGGATCATGCACCAACTCACCGCTGAGGTTCTTCATGGGGTATTGACCAATCACTTTGGGATTACAAGATCTATGTGGCAGACAAAAAATATACTCTCAAGTCTCCTATCAAGTAGAATCTTTCTCACCGACCTGAAGGCTGCTGTTAAATCTGAGGTGCAGAAAGAGCTCAACTTGGAACGGACGGACCTTCAGATGAAAGAGATTCTCCTGACGTTGTGCAAATACAGGAGTACAAAGCGAGACAGAGTAGACTACATTCTGATCCAAGAGCTTCACAAAGAAGAACTTCAGTGGGTGGACTACAGCGCTGACCAGATTACTGTGAAGATGAAACTGTCTGAGGAGATTTTCAGTCTTCTCCTAGAGGACACTATATCAGTTCTCAAACACATGTACATGACACCATCCTTTTGAACCTGAGAAAGAAGGTTACTGTTCCCTCAATAAAATATATCTTATTAATTGCCAATACATTCTCAAATGTTTTGAATTCAGTTACAATTACATGTATTGATTATCTATGATCGTTGAAGAATTTAAATAAATC

Function

NR:

description
uncharacterized protein LOC110535680

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620840.2 True 3232 mRNA 0.45 8 38989854 39004586

Neighbor

gene id symbol gene type direction distance location
LOC110535679 LOC106580199 coding upstream 35501 38951292 ~ 38954353 (+)
LOC118937441 NA coding upstream 149794 38838167 ~ 38840060 (+)
LOC118937440 NA coding upstream 154878 38833162 ~ 38834976 (+)
LOC110535673 enkur coding upstream 358151 38626261 ~ 38631703 (+)
LOC110535674 LOC106578734 coding upstream 492743 38351571 ~ 38497111 (+)
LOC110535681 mapkapk5 coding downstream 195150 39199736 ~ 39237016 (+)
LOC110535687 LOC106580186 coding downstream 477909 39482495 ~ 39520766 (+)
LOC110535016 NA coding downstream 622383 39626969 ~ 39633152 (+)
LOC118937442 NA coding downstream 651045 39655631 ~ 39656997 (+)
LOC118937443 NA coding downstream 653024 39657610 ~ 39660250 (+)
G975748 NA non-coding upstream 66616 38920352 ~ 38923238 (+)
G975747 LOC106582599 non-coding upstream 67701 38917571 ~ 38922153 (+)
G975701 NA non-coding upstream 76407 38835232 ~ 38913447 (+)
G976016 NA non-coding downstream 52466 39057052 ~ 39057433 (+)
G976024 NA non-coding downstream 57385 39061971 ~ 39062338 (+)
G976054 NA non-coding downstream 82340 39086926 ~ 39087255 (+)
G976055 NA non-coding downstream 82872 39087458 ~ 39087739 (+)
G976074 NA non-coding downstream 101576 39106162 ~ 39106409 (+)
G974184 NA other upstream 926754 38057798 ~ 38063100 (+)
LOC110535015 LOC106578726 other upstream 946524 37866715 ~ 38045713 (+)
lztfl1 LOC106590188 other upstream 1154519 37813177 ~ 37835340 (+)
G973918 NA other upstream 1310486 37651138 ~ 37679368 (+)
LOC110535658 NA other upstream 1446652 37542062 ~ 37543202 (+)
G976017 NA other downstream 53090 39057676 ~ 39058011 (+)
G978255 NA other downstream 1763250 40767836 ~ 40768229 (+)
G978396 NA other downstream 1998490 41003076 ~ 41016088 (+)
G979689 NA other downstream 3073906 42078492 ~ 42078855 (+)
G979965 NA other downstream 3523934 42528520 ~ 42533308 (+)

Expression


Co-expression Network