Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110535687 |
| gene name | LOC106580186 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 39482495 ~ 39520766 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: ataxin-2-like isoform X12 |
| id | description |
|---|---|
| K23625 | ATXN2_2L; ataxin 2/2L |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036935446.1 | False | 4149 | mRNA | 0.56 | 25 | 39482495 | 39520766 |
| XM_036935447.1 | False | 4134 | mRNA | 0.56 | 25 | 39482495 | 39520766 |
| XM_036935448.1 | False | 4134 | mRNA | 0.56 | 24 | 39482495 | 39520766 |
| XM_036935450.1 | False | 4131 | mRNA | 0.56 | 24 | 39482495 | 39520766 |
| XM_036935451.1 | False | 4122 | mRNA | 0.56 | 25 | 39482495 | 39520766 |
| XM_036935452.1 | False | 4119 | mRNA | 0.56 | 24 | 39482495 | 39520766 |
| XM_036935453.1 | False | 4101 | mRNA | 0.56 | 23 | 39482495 | 39520766 |
| XM_036935454.1 | False | 3933 | mRNA | 0.55 | 24 | 39482495 | 39520766 |
| XM_036935455.1 | True | 3918 | mRNA | 0.55 | 24 | 39482495 | 39520766 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110535681 | mapkapk5 | coding | upstream | 245479 | 39199736 ~ 39237016 (+) |
| LOC110535680 | LOC106580198 | coding | upstream | 477909 | 38989854 ~ 39004586 (+) |
| LOC110535679 | LOC106580199 | coding | upstream | 528142 | 38951292 ~ 38954353 (+) |
| LOC118937441 | NA | coding | upstream | 642435 | 38838167 ~ 38840060 (+) |
| LOC118937440 | NA | coding | upstream | 647519 | 38833162 ~ 38834976 (+) |
| LOC110535016 | NA | coding | downstream | 106203 | 39626969 ~ 39633152 (+) |
| LOC118937442 | NA | coding | downstream | 134865 | 39655631 ~ 39656997 (+) |
| LOC118937443 | NA | coding | downstream | 136844 | 39657610 ~ 39660250 (+) |
| LOC110535018 | LOC106580184 | coding | downstream | 174144 | 39694910 ~ 39787287 (+) |
| LOC110536621 | NA | coding | downstream | 315440 | 39836206 ~ 39837832 (+) |
| G976065 | NA | non-coding | upstream | 251058 | 39229675 ~ 39231437 (+) |
| G976062 | NA | non-coding | upstream | 254655 | 39227264 ~ 39227840 (+) |
| G976064 | NA | non-coding | upstream | 256646 | 39225256 ~ 39225849 (+) |
| G976066 | NA | non-coding | upstream | 258195 | 39223946 ~ 39224300 (+) |
| G976106 | NA | non-coding | upstream | 309985 | 39172278 ~ 39172510 (+) |
| G976383 | NA | non-coding | downstream | 88666 | 39609432 ~ 39609765 (+) |
| G976396 | NA | non-coding | downstream | 113602 | 39634368 ~ 39634602 (+) |
| G976714 | NA | non-coding | downstream | 146304 | 39667070 ~ 39667337 (+) |
| G976719 | NA | non-coding | downstream | 150663 | 39671429 ~ 39671635 (+) |
| G976722 | NA | non-coding | downstream | 153596 | 39674362 ~ 39674629 (+) |
| G976017 | NA | other | upstream | 424484 | 39057676 ~ 39058011 (+) |
| G974184 | NA | other | upstream | 1419395 | 38057798 ~ 38063100 (+) |
| LOC110535015 | LOC106578726 | other | upstream | 1439165 | 37866715 ~ 38045713 (+) |
| lztfl1 | LOC106590188 | other | upstream | 1647160 | 37813177 ~ 37835340 (+) |
| G973918 | NA | other | upstream | 1803127 | 37651138 ~ 37679368 (+) |
| G978255 | NA | other | downstream | 1247070 | 40767836 ~ 40768229 (+) |
| G978396 | NA | other | downstream | 1482310 | 41003076 ~ 41016088 (+) |
| G979689 | NA | other | downstream | 2557726 | 42078492 ~ 42078855 (+) |
| G979965 | NA | other | downstream | 3007754 | 42528520 ~ 42533308 (+) |
| G980019 | NA | other | downstream | 3111058 | 42631824 ~ 42636709 (+) |
