LOC118937442


Basic Information

Item Value
gene id LOC118937442
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 39655631 ~ 39656997 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034792.1
ACCTGCAGGAGTTGTGCAGAGCCCTGTTGAGGTGTGGCTCAGCCCTCCCTGACGGCTGCCTCCCGTACCAGCAGAGCACACACTACAACAGCATGCTCCATGCCAACTCTCTCTGCCACTTCCACATCGCTGCCAGCATCAACCCTGCCACAGATATCCTCCTGCTGCCCTCCATCACGTCACTGTGGGTGGGATGACGAGGAGCCTGGCGGGCCCTTCACCGTGCACTGGCTCAACAACCAGGAGCTGTACCTCACCCTAACCATGGAGGTGTTCCTGCAGCAGCTCAGGggcagcatggagcagcacaactaaaaaaacaaaacaaaactccCAGGAGGGAGGTAGAGGAGGCTGCTAGACGTGCGGCAGAACGAGGACCCAACGTGGCGTCCGTCCAGCTGCCTCCTGCAGCGGTGAAGGACCAGGTGCAGATTCTACTAGATAACTGGAACAGAGGGGCAGACATGCTGTTCAGTATACACCCCATGGACGGCTCTGCTGGAGTGGCACGTTGACATGCTGGATGAGTATCACCCCGGCAG

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: dmX-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034792.1 True 545 mRNA 0.59 3 39655631 39656997
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110535016 NA coding upstream 22479 39626969 ~ 39633152 (+)
LOC110535687 LOC106580186 coding upstream 134865 39482495 ~ 39520766 (+)
LOC110535681 mapkapk5 coding upstream 418615 39199736 ~ 39237016 (+)
LOC110535680 LOC106580198 coding upstream 651045 38989854 ~ 39004586 (+)
LOC110535679 LOC106580199 coding upstream 701278 38951292 ~ 38954353 (+)
LOC118937443 NA coding downstream 613 39657610 ~ 39660250 (+)
LOC110535018 LOC106580184 coding downstream 37913 39694910 ~ 39787287 (+)
LOC110536621 NA coding downstream 179209 39836206 ~ 39837832 (+)
LOC110535689 LOC106580183 coding downstream 284593 39941590 ~ 39949172 (+)
LOC110535690 LOC106580180 coding downstream 323711 39980708 ~ 39982968 (+)
G976396 NA non-coding upstream 21029 39634368 ~ 39634602 (+)
G976383 NA non-coding upstream 45866 39609432 ~ 39609765 (+)
G976065 NA non-coding upstream 424194 39229675 ~ 39231437 (+)
G976062 NA non-coding upstream 427791 39227264 ~ 39227840 (+)
G976064 NA non-coding upstream 429782 39225256 ~ 39225849 (+)
G976714 NA non-coding downstream 10073 39667070 ~ 39667337 (+)
G976719 NA non-coding downstream 14432 39671429 ~ 39671635 (+)
G976722 NA non-coding downstream 17365 39674362 ~ 39674629 (+)
G976733 NA non-coding downstream 35866 39692863 ~ 39693126 (+)
G976911 NA non-coding downstream 142683 39799680 ~ 39799892 (+)
G976017 NA other upstream 597620 39057676 ~ 39058011 (+)
G974184 NA other upstream 1592531 38057798 ~ 38063100 (+)
LOC110535015 LOC106578726 other upstream 1612301 37866715 ~ 38045713 (+)
lztfl1 LOC106590188 other upstream 1820296 37813177 ~ 37835340 (+)
G973918 NA other upstream 1976263 37651138 ~ 37679368 (+)
G978255 NA other downstream 1110839 40767836 ~ 40768229 (+)
G978396 NA other downstream 1346079 41003076 ~ 41016088 (+)
G979689 NA other downstream 2421495 42078492 ~ 42078855 (+)
G979965 NA other downstream 2871523 42528520 ~ 42533308 (+)
G980019 NA other downstream 2974827 42631824 ~ 42636709 (+)

Expression

LOC118937442 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.8.
End of interactive chart.

LOC118937442 Expression in each Bioproject

Bar chart with 6 bars.
LOC118937442 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.

Co-expression Network