Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110535018 |
| gene name | LOC106580184 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 39694910 ~ 39787287 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| semaphorin-6A-like isoform X1 |
| id | description |
|---|---|
| K06842 | SEMA6; semaphorin 6 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036935458.1 | False | 5710 | mRNA | 0.48 | 20 | 39694910 | 39787287 |
| XM_036935457.1 | False | 5894 | mRNA | 0.48 | 20 | 39694911 | 39787287 |
| XM_036935460.1 | False | 5852 | mRNA | 0.48 | 19 | 39694911 | 39787287 |
| XM_036935461.1 | False | 5738 | mRNA | 0.47 | 19 | 39694911 | 39787287 |
| XM_036935462.1 | False | 5696 | mRNA | 0.47 | 18 | 39694911 | 39787287 |
| XM_036935459.1 | True | 5605 | mRNA | 0.48 | 20 | 39694930 | 39787287 |
39,690,000
39,700,000
39,710,000
39,720,000
39,730,000
39,740,000
39,750,000
39,760,000
39,770,000
39,780,000
39,790,000
39,800,000
39,810,000
39,820,000
39,830,000
39,840,000
39,850,000
39,860,000
39,870,000
39,880,000
NC_048575.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118937443 | NA | coding | upstream | 34660 | 39657610 ~ 39660250 (+) |
| LOC118937442 | NA | coding | upstream | 37913 | 39655631 ~ 39656997 (+) |
| LOC110535016 | NA | coding | upstream | 61758 | 39626969 ~ 39633152 (+) |
| LOC110535687 | LOC106580186 | coding | upstream | 174144 | 39482495 ~ 39520766 (+) |
| LOC110535681 | mapkapk5 | coding | upstream | 457894 | 39199736 ~ 39237016 (+) |
| LOC110536621 | NA | coding | downstream | 48919 | 39836206 ~ 39837832 (+) |
| LOC110535689 | LOC106580183 | coding | downstream | 154303 | 39941590 ~ 39949172 (+) |
| LOC110535690 | LOC106580180 | coding | downstream | 193421 | 39980708 ~ 39982968 (+) |
| LOC110535691 | LOC106580179 | coding | downstream | 197298 | 39984585 ~ 39990217 (+) |
| LOC118937349 | NA | coding | downstream | 211178 | 39998465 ~ 40000628 (+) |
| G976733 | NA | non-coding | upstream | 1784 | 39692863 ~ 39693126 (+) |
| G976722 | NA | non-coding | upstream | 20281 | 39674362 ~ 39674629 (+) |
| G976719 | NA | non-coding | upstream | 23275 | 39671429 ~ 39671635 (+) |
| G976714 | NA | non-coding | upstream | 27573 | 39667070 ~ 39667337 (+) |
| G976396 | NA | non-coding | upstream | 60308 | 39634368 ~ 39634602 (+) |
| G976911 | NA | non-coding | downstream | 12393 | 39799680 ~ 39799892 (+) |
| G976922 | NA | non-coding | downstream | 20511 | 39807798 ~ 39808057 (+) |
| G976925 | NA | non-coding | downstream | 21622 | 39808909 ~ 39809141 (+) |
| G976935 | NA | non-coding | downstream | 26778 | 39814065 ~ 39814607 (+) |
| G976960 | NA | non-coding | downstream | 61807 | 39849094 ~ 39849410 (+) |
| G976017 | NA | other | upstream | 636899 | 39057676 ~ 39058011 (+) |
| G974184 | NA | other | upstream | 1631810 | 38057798 ~ 38063100 (+) |
| LOC110535015 | LOC106578726 | other | upstream | 1651580 | 37866715 ~ 38045713 (+) |
| lztfl1 | LOC106590188 | other | upstream | 1859575 | 37813177 ~ 37835340 (+) |
| G973918 | NA | other | upstream | 2015542 | 37651138 ~ 37679368 (+) |
| G978255 | NA | other | downstream | 980549 | 40767836 ~ 40768229 (+) |
| G978396 | NA | other | downstream | 1215789 | 41003076 ~ 41016088 (+) |
| G979689 | NA | other | downstream | 2291205 | 42078492 ~ 42078855 (+) |
| G979965 | NA | other | downstream | 2741233 | 42528520 ~ 42533308 (+) |
| G980019 | NA | other | downstream | 2844537 | 42631824 ~ 42636709 (+) |
