LOC110536621


Basic Information

Item Value
gene id LOC110536621
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 39836206 ~ 39837832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475491.2
aatatcCTACTGATTCGGTGATCACCAATCCTGCAACCGCAAAATGTCGGATAAAGcaatttcacacaaaaaaaaaacttttttcttCATCTACTTTTTAAGGAGATGCAGTAACGGGACCACACATACAGACGCATATACAGTATTTGTTCATTAACATCTTAAATgcttttttaaatgaaataatgATAAagtctttcaaaatgcagatgtttatttcaACTACATCTCAACTACAATATTTTATGTAACCTTTTGCTTTGTAAATAGCTAAATTTACCATCAAATATGGGCCTGGTCCCTGGCGAGAAATTGCTCCCCACACATGGAGTTTGAGGGGATGTTTGAGACTCGGCATGCTTGATCTTTTTTTCTGTAGCAATTTTGAGCAAATTGCTCAAGGGCCACGGTTGATTAGTCTGTGAAGATGACATCATTGAATGTCTTGCCAGCTTCGATCCATGCCTGGGCCTGCATCATGTGAAGTGCTTTGTTTGTCAGACGAACCATTGGGTCGAAACTTGAAAATGAGCCGGAGCTGAGAGGATCACCAAAACTAAAGAGCATACAGCCATGCCGACAACCATCCATGGAGATCAGTGGACAAAGGGCTAGACAACGGGCCTCACCGAAAAAACGCATGGTTCCCAAGAAAGCGGCCACTGTAATCGATGGGGGCTCAGGATGGTATTATTctgctcatctgatgaaggtgcacACTTTGAAGACCGAGTTTGAGATATTGAAGGCAGACcaacagaaagagaaacattCTCTCAGGGCAGAGATACGGGCGACAGATGATGCATTGGACCAGAGACAAAAAAGCATTAAAGACAGAGCTAATGAGTACTTGAGGTCACTGAGaaagtctggacatggcctgctctcacttaagtaaggaattaggcacttgTATGACGTTTACTATGTAGGCTACAGTAAACCTATTTGTCCTGTTGGTTTttgtcagactgcacagtagcctagtAAACATATGCATTTTAAAACagttgtatttattttaaaatcaaATTCAATAATATACTTGTACCACTGTAGataatgtgtttttattttttagaatacAGTTCTCggtttacagtagtgatggacagttggaggcattttgaaaacatgttttcaaacacttgtttttcacaagtgtagcaggttgtgaactctgcacACAACGTTTCCATTCCGAGAATGAGAATGGTAAATGGCTGTATTAATACATTCACTCAGTACATTGGAATACAAAAGAAGCCATCAACCCATGATGGGCTATTATCAGGACAATGGACTCTTGCCAAGGAGGAGATGAATAAGGAGGGTAGGAGGAGCGTTGTATTTAAAGACACTGCACAGAAGCCCAACAAACAAGTGCATTttgaaatagtaaaaaaaaaatgaattcaaTAATAAAATGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475491.2 True 1433 mRNA 0.39 3 39836206 39837832

Neighbor

gene id symbol gene type direction distance location
LOC110535018 LOC106580184 coding upstream 48919 39694910 ~ 39787287 (+)
LOC118937443 NA coding upstream 175956 39657610 ~ 39660250 (+)
LOC118937442 NA coding upstream 179209 39655631 ~ 39656997 (+)
LOC110535016 NA coding upstream 203054 39626969 ~ 39633152 (+)
LOC110535687 LOC106580186 coding upstream 315440 39482495 ~ 39520766 (+)
LOC110535689 LOC106580183 coding downstream 103758 39941590 ~ 39949172 (+)
LOC110535690 LOC106580180 coding downstream 142876 39980708 ~ 39982968 (+)
LOC110535691 LOC106580179 coding downstream 146753 39984585 ~ 39990217 (+)
LOC118937349 NA coding downstream 160633 39998465 ~ 40000628 (+)
LOC118937386 NA coding downstream 167221 40005053 ~ 40014741 (+)
G976935 NA non-coding upstream 21599 39814065 ~ 39814607 (+)
G976925 NA non-coding upstream 27065 39808909 ~ 39809141 (+)
G976922 NA non-coding upstream 28149 39807798 ~ 39808057 (+)
G976911 NA non-coding upstream 36314 39799680 ~ 39799892 (+)
G976733 NA non-coding upstream 143080 39692863 ~ 39693126 (+)
G976960 NA non-coding downstream 11262 39849094 ~ 39849410 (+)
G976977 NA non-coding downstream 21884 39859716 ~ 39860089 (+)
G977018 NA non-coding downstream 51151 39888983 ~ 39889199 (+)
G977071 NA non-coding downstream 126432 39964264 ~ 39964696 (+)
G977115 NA non-coding downstream 205931 40043763 ~ 40044055 (+)
G976017 NA other upstream 778195 39057676 ~ 39058011 (+)
G974184 NA other upstream 1773106 38057798 ~ 38063100 (+)
LOC110535015 LOC106578726 other upstream 1792876 37866715 ~ 38045713 (+)
lztfl1 LOC106590188 other upstream 2000871 37813177 ~ 37835340 (+)
G973918 NA other upstream 2156838 37651138 ~ 37679368 (+)
G978255 NA other downstream 930004 40767836 ~ 40768229 (+)
G978396 NA other downstream 1165244 41003076 ~ 41016088 (+)
G979689 NA other downstream 2240660 42078492 ~ 42078855 (+)
G979965 NA other downstream 2690688 42528520 ~ 42533308 (+)
G980019 NA other downstream 2793992 42631824 ~ 42636709 (+)

Expression


Co-expression Network