LOC110535689 (LOC106580183)


Basic Information

Item Value
gene id LOC110535689
gene name LOC106580183
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 39941590 ~ 39949172 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620862.2
GGCGATGCTCAAAAGTTAGTTAGAAAGCAAGCTTGCCGGGATAAATACGCGCTGAACCATGGAGCAAACCGAAGTGATGAAACCAGAAACTCTTGATGATCTGATCAAAGTTTTGCATAAAATCTTTGAAAGTGACAATATCAATGTGGAGGAGGTGCAAAATATAATGGAAGCATATGACAGCAATCCACAGGAATGGATGAAATTTGCAAAATTCGACCAGTTCAGGTACACAAGGAACCTGGTGGATGAAGGGAATGGAAAGTTCAACCTCATGATACTTTGTTGGGGAGAGGGTCACGGCAGCAGTATCCATGACCACACAGACTCCCACTGTTTCATGAAGTTGCTGCAAGGCCAGCTGAAGGAGACGCTTTTTGAATGGCCCGATAAAAAAACATGCAACATGGTTCAGAAATCTCAGAGAATCCTGCAAACAAACCAGTGTGCCTACATCAATGATTCCTTTGGGCTGCACAGAGTAGAGAACGCCAGCCACACAGAATGTTCAGCCAGTTTGCACCTGTACAGTCCCCCCTTCAAGACCTGCCAGACCTTTGACCAGCGGACTGGACACAAGAACACTGTCAAGATGACGTTCTGGAGCAAATTTGGAGAGAGGACTCCATTTGAAACCACAGTCTCACAAGAAAATAACTAAGAAGCTGAAGACATTTGCGTTTGGAATGACAATGTTGTAAATTCAGTCAACATGACACGGCAAAGAAGCAAAATGCGGACCTACAACTAAACAACCGTTTATATTGGAGCGGACATTTCAAAAGGACATGTGGGTAGTTAGAATGGCTTTATCACTGCCCAGTGTGAGCTTGGCAAAAACTGATGAGCACAGGATGAATGCATGAATAGGCTCAGCCATGGATTGAATCTGCTCTTTGTTTGGTAGGCCTGAGGAGACCCCTTCCCAATAACAGCATTCCTATGTGTCTATGACCTCTGTAACCACACTTTTGGACTGTTACGGCGGACGGTTGAAGTGTATAATGTATGAGTGGAAATAGGTTGTCTATTCAATCACATAAAGTGATGATCTAAAATCATTCTGTGATCAACAGTTTTACACTCAATGGAGCACTTTTATTGCGGTATAGATTTTTACACAAAATGATCTTAACACTTGTCAAAATAGTGATGTAACATGAAATAGTTTGTAAAGTCAAATTAGAGCATTTGGCAAAGGTAAAGCTTTATAAATGTATTGGAAAATACGATGCCTGTAATTTATATTTGCTGTGTTCAGTTTTTGGGGTACGAGAAGGGGTGATAATTGGTATTAGCTATTTCAGTGTCATTCTTGAATGTGTTTCATTGGTTTTCAGCCTATGTATTAGGAGACCAGTCAAGGAGAGTCTGGACTTTAGGGGCAGGGTTGTATCATAATAAAGGCAATGCTCTCACTTtttctcaggattttgcctgttgTTTTAATTGTAGATGTATTTATATAGGTTACAACATAGTGCCACAATAGCATTGTCGGTTAAAGAGATTCTacagtacttttgtatactttttagccaatagttctgaaagtagagctcacgagccaaaagtggtccccggAAAATGTGTACTATTTCAcatgtgcagatatgtgcaccacgtcattgctctcGCTTTGCTGTGTGGGCAACTTGCtggctgtcactcaaatggcaaggggctgaagctcattggcaaTAACTCGAATTGCTAAGGGGCTGGCCCATGGGGAAAATGTTGGGATTTCGTAGCTAATTGAGGtcagacagtaattctgctcatagattatgcatgtatgaactaaacattgacacatccagcccaaatcTGGAGGCTTAAATAATTAGTAGTTGCCAAAATTACACAACTTTAAAATGCATGAAAGAATATATTGTGAATGATAAGCTTTGCTTTGACTGTTGACCATTAAACATTACATATGTCATGAgaaa

Function

NR:

description
cysteine dioxygenase type 1-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046439 L-cysteine metabolic process biological_process
GO:0005506 iron ion binding molecular_function
GO:0017172 cysteine dioxygenase activity molecular_function

KEGG:

id description
K00456 CDO1; cysteine dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620862.2 True 1955 mRNA 0.41 5 39941590 39949172

Neighbor

gene id symbol gene type direction distance location
LOC110536621 NA coding upstream 103758 39836206 ~ 39837832 (+)
LOC110535018 LOC106580184 coding upstream 154303 39694910 ~ 39787287 (+)
LOC118937443 NA coding upstream 281340 39657610 ~ 39660250 (+)
LOC118937442 NA coding upstream 284593 39655631 ~ 39656997 (+)
LOC110535016 NA coding upstream 308438 39626969 ~ 39633152 (+)
LOC110535690 LOC106580180 coding downstream 31536 39980708 ~ 39982968 (+)
LOC110535691 LOC106580179 coding downstream 35413 39984585 ~ 39990217 (+)
LOC118937349 NA coding downstream 49293 39998465 ~ 40000628 (+)
LOC118937386 NA coding downstream 55881 40005053 ~ 40014741 (+)
LOC110535019 LOC106580173 coding downstream 66294 40015466 ~ 40038754 (+)
G977018 NA non-coding upstream 52391 39888983 ~ 39889199 (+)
G976977 NA non-coding upstream 81501 39859716 ~ 39860089 (+)
G976960 NA non-coding upstream 92180 39849094 ~ 39849410 (+)
G976935 NA non-coding upstream 126983 39814065 ~ 39814607 (+)
G976925 NA non-coding upstream 132449 39808909 ~ 39809141 (+)
G977071 NA non-coding downstream 15092 39964264 ~ 39964696 (+)
G977115 NA non-coding downstream 94591 40043763 ~ 40044055 (+)
G977120 NA non-coding downstream 107219 40056391 ~ 40056599 (+)
G977121 NA non-coding downstream 107679 40056851 ~ 40057062 (+)
G977122 NA non-coding downstream 108030 40057202 ~ 40057521 (+)
G976017 NA other upstream 883579 39057676 ~ 39058011 (+)
G974184 NA other upstream 1878490 38057798 ~ 38063100 (+)
LOC110535015 LOC106578726 other upstream 1898260 37866715 ~ 38045713 (+)
lztfl1 LOC106590188 other upstream 2106255 37813177 ~ 37835340 (+)
G973918 NA other upstream 2262222 37651138 ~ 37679368 (+)
G978255 NA other downstream 818664 40767836 ~ 40768229 (+)
G978396 NA other downstream 1053904 41003076 ~ 41016088 (+)
G979689 NA other downstream 2129320 42078492 ~ 42078855 (+)
G979965 NA other downstream 2579348 42528520 ~ 42533308 (+)
G980019 NA other downstream 2682652 42631824 ~ 42636709 (+)

Expression


Co-expression Network