LOC110535690 (LOC106580180)


Basic Information

Item Value
gene id LOC110535690
gene name LOC106580180
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 39980708 ~ 39982968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620863.2
CGCTTCCTCCGATCATTCTGACCAATAGTAGAAGAACGGAGGCGTGGCCATTTCATGTTAGCCAATGAGGTGATTCGTTGATGCTACGTCTCCTAGTAGCTACTTTCATCCGGATGAGGGATTTAAAAAATAGTATTGGTTTGCAGGTTCACAGCAATATCAGATTACCACTCTTCCACCAGCCAAGATGTACAGCTATCATGGTACCATCAGAGTCTTGGTGCAGGTTCTTTGGGCCTACCTGCTCTGTGGTTGGACGTTTGGCTCCGAGCTTACGTTTGAGCTTCCAGATAACGCAAAACAGTGTTTCTATGAAGATATTACAATTGGTACCAAGTGCACACTTGAGTTCCAGGTTGTCACTGGCGGGCATTACGATGTTGACTGTCGTCTAGAGGATGCAGATGGTACTGTTCTTTACAAAGAAATGAAGAAGCAGTATGACAGCTTTACATTCACTGCTGCCAAGAACGGAACATATAAGTTCTGCTTCAGCAATGAGTTTTCCACCTTCACGCATAAGACCGTCTACTTCGATTTCCAAGTTGGAGAGGATCCCCCACTTTTCCCCAACGAGAACAGGGTCACTGCTTTAACCCAGATGGAGTCTGCCTGCGTGTCTATTCATGAGGCCCTGAAATCGGTCATTGACTATCAGACACATTTCCGTCTACGGGAGGCTCAGGGACGCAGCCGTGCCGAGGACCTTAACACAAGAGTGGCTTTCTGGTCCATTGGGGAGGCCTTAATTTTGCTGGTAGTCAGCATCAGCCAGGTGGTCTTGCTGAGAAGCTTCTTTTCTGACAGGAAGACCACCACCACGCGTGTTGGATCCTAACATCCCACAGCATCTCATCCCGGTCACCTCCACAAGGGACTTCAGATCCAACGCCACCAACAACAGTTCACggcagaatattttttttatagatgCCATTCATAGAATTAGAATTTTTAAGGTACGTTCAGGCTTTGAAGTTACTTTTAAAAACCAACTGGATTATCTAAATAAAATCTAGCAAATAATGTTGGAAATGCAACAACCTATTTATCATGTGGGTGCATATTGTCATTGTTTTTTACAACACTGTTTACCAGAATAATGTGAACAAACTGGTAGCCCGTCTTGCAGTTCTAATTTGACACCTTCTTGATACATTAAATCGTAGTTGCAGCATTTAATTTGTGCACAGTTCTCACTTCCTTAGCAATGACAATTCAAACTTGGTTGTTAGATTCAAGTTGTgatgtcaaacaaatcaaaagtaCTCTGTTGTAAACAATTGGTTTGTTTTTAATGTGAGATTCCACTCAACAGGCTTATGGCAAGCAGAGGTTGTGTTTTGGGTGGATGGAACTTGACTAGGAGTTTAACCATCTCTTTATTGTAACTGGTGTTTTGTTGTTGGTTtatgtgtaaaacataaatatGAAGCTGGTGTAAGCACAAaatgatttaatttatttcatattAGGCATGTGTGTGGTCATATGTTTGCGTACTGTTCATGATTGTTTCTGCACAGTCATCAGCTTGTTGGCAGTCCAAGGAATTGTTTGCTTATTTGCATAGCTTAATAAACATTCTGGTAAACCCA
>XM_021620865.2
TAGAAGAACGGAGGCGTGGCCATTTCATGTTAGCCAATGAGGTGATTCGTTGATGCTACGTCTCCTAGTAGCTACTTTCATCCGGATGAGGGATTTAAACCAAGATGTACAGCTATCATGGTACCATCAGAGTCTTGGTGCAGGTTCTTTGGGCCTACCTGCTCTGTGGTTGGACGTTTGGCTCCGAGCTTACGTTTGAGCTTCCAGATAACGCAAAACAGTGTTTCTATGAAGATATTACAATTGGTACCAAGTGCACACTTGAGTTCCAGGTTGTCACTGGCGGGCATTACGATGTTGACTGTCGTCTAGAGGATGCAGATGGTACTGTTCTTTACAAAGAAATGAAGAAGCAGTATGACAGCTTTACATTCACTGCTGCCAAGAACGGAACATATAAGTTCTGCTTCAGCAATGAGTTTTCCACCTTCACGCATAAGACCGTCTACTTCGATTTCCAAGTTGGAGAGGATCCCCCACTTTTCCCCAACGAGAACAGGGTCACTGCTTTAACCCAGATGGAGTCTGCCTGCGTGTCTATTCATGAGGCCCTGAAATCGGTCATTGACTATCAGACACATTTCCGTCTACGGGAGGCTCAGGGACGCAGCCGTGCCGAGGACCTTAACACAAGAGTGGCTTTCTGGTCCATTGGGGAGGCCTTAATTTTGCTGGTAGTCAGCATCAGCCAGGTGGTCTTGCTGAGAAGCTTCTTTTCTGACAGGAAGACCACCACCACGCGTGTTGGATCCTAACATCCCACAGCATCTCATCCCGGTCACCTCCACAAGGGACTTCAGATCCAACGCCACCAACAACAGTTCACggcagaatattttttttatagatgCCATTCATAGAATTAGAATTTTTAAGGTACGTTCAGGCTTTGAAGTTACTTTTAAAAACCAACTGGATTATCTAAATAAAATCTAGCAAATAATGTTGGAAATGCAACAACCTATTTATCATGTGGGTGCATATTGTCATTGTTTTTTACAACACTGTTTACCAGAATAATGTGAACAAACTGGTAGCCCGTCTTGCAGTTCTAATTTGACACCTTCTTGATACATTAAATCGTAGTTGCAGCATTTAATTTGTGCACAGTTCTCACTTCCTTAGCAATGACAATTCAAACTTGGTTGTTAGATTCAAGTTGTgatgtcaaacaaatcaaaagtaCTCTGTTGTAAACAATTGGTTTGTTTTTAATGTGAGATTCCACTCAACAGGCTTATGGCAAGCAGAGGTTGTGTTTTGGGTGGATGGAACTTGACTAGGAGTTTAACCATCTCTTTATTGTAACTGGTGTTTTGTTGTTGGTTtatgtgtaaaacataaatatGAAGCTGGTGTAAGCACAAaatgatttaatttatttcatattAGGCATGTGTGTGGTCATATGTTTGCGTACTGTTCATGATTGTTTCTGCACAGTCATCAGCTTGTTGGCAGTCCAAGGAATTGTTTGCTTATTTGCATAGCTTAATAAACATTCTGGTAAACCCA
>XM_021620864.2
CCATTTCATGTTAGCCAATGAGGTGATTCGTTGATGCTACGTCTCCTAGTAGCTACTTTCATCCGGATGAGGGATTTAAAGTTCACAGCAATATCAGATTACCACTCTTCCACCAGCCAAGATGTACAGCTATCATGGTACCATCAGAGTCTTGGTGCAGGTTCTTTGGGCCTACCTGCTCTGTGGTTGGACGTTTGGCTCCGAGCTTACGTTTGAGCTTCCAGATAACGCAAAACAGTGTTTCTATGAAGATATTACAATTGGTACCAAGTGCACACTTGAGTTCCAGGTTGTCACTGGCGGGCATTACGATGTTGACTGTCGTCTAGAGGATGCAGATGGTACTGTTCTTTACAAAGAAATGAAGAAGCAGTATGACAGCTTTACATTCACTGCTGCCAAGAACGGAACATATAAGTTCTGCTTCAGCAATGAGTTTTCCACCTTCACGCATAAGACCGTCTACTTCGATTTCCAAGTTGGAGAGGATCCCCCACTTTTCCCCAACGAGAACAGGGTCACTGCTTTAACCCAGATGGAGTCTGCCTGCGTGTCTATTCATGAGGCCCTGAAATCGGTCATTGACTATCAGACACATTTCCGTCTACGGGAGGCTCAGGGACGCAGCCGTGCCGAGGACCTTAACACAAGAGTGGCTTTCTGGTCCATTGGGGAGGCCTTAATTTTGCTGGTAGTCAGCATCAGCCAGGTGGTCTTGCTGAGAAGCTTCTTTTCTGACAGGAAGACCACCACCACGCGTGTTGGATCCTAACATCCCACAGCATCTCATCCCGGTCACCTCCACAAGGGACTTCAGATCCAACGCCACCAACAACAGTTCACggcagaatattttttttatagatgCCATTCATAGAATTAGAATTTTTAAGGTACGTTCAGGCTTTGAAGTTACTTTTAAAAACCAACTGGATTATCTAAATAAAATCTAGCAAATAATGTTGGAAATGCAACAACCTATTTATCATGTGGGTGCATATTGTCATTGTTTTTTACAACACTGTTTACCAGAATAATGTGAACAAACTGGTAGCCCGTCTTGCAGTTCTAATTTGACACCTTCTTGATACATTAAATCGTAGTTGCAGCATTTAATTTGTGCACAGTTCTCACTTCCTTAGCAATGACAATTCAAACTTGGTTGTTAGATTCAAGTTGTgatgtcaaacaaatcaaaagtaCTCTGTTGTAAACAATTGGTTTGTTTTTAATGTGAGATTCCACTCAACAGGCTTATGGCAAGCAGAGGTTGTGTTTTGGGTGGATGGAACTTGACTAGGAGTTTAACCATCTCTTTATTGTAACTGGTGTTTTGTTGTTGGTTtatgtgtaaaacataaatatGAAGCTGGTGTAAGCACAAaatgatttaatttatttcatattAGGCATGTGTGTGGTCATATGTTTGCGTACTGTTCATGATTGTTTCTGCACAGTCATCAGCTTGTTGGCAGTCCAAGGAATTGTTTGCTTATTTGCATAGCTTAATAAACATTCTGGTAAACCCA

Function

NR:

description
transmembrane emp24 domain-containing protein 7-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20349 TMED7; p24 family protein gamma-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620863.2 False 1598 mRNA 0.42 4 39980708 39982968
XM_021620865.2 False 1515 mRNA 0.42 4 39980736 39982968
XM_021620864.2 True 1532 mRNA 0.42 4 39980755 39982968

Neighbor

gene id symbol gene type direction distance location
LOC110535689 LOC106580183 coding upstream 31536 39941590 ~ 39949172 (+)
LOC110536621 NA coding upstream 142876 39836206 ~ 39837832 (+)
LOC110535018 LOC106580184 coding upstream 193421 39694910 ~ 39787287 (+)
LOC118937443 NA coding upstream 320458 39657610 ~ 39660250 (+)
LOC118937442 NA coding upstream 323711 39655631 ~ 39656997 (+)
LOC110535691 LOC106580179 coding downstream 1617 39984585 ~ 39990217 (+)
LOC118937349 NA coding downstream 15497 39998465 ~ 40000628 (+)
LOC118937386 NA coding downstream 22085 40005053 ~ 40014741 (+)
LOC110535019 LOC106580173 coding downstream 32498 40015466 ~ 40038754 (+)
ccser1 LOC106580172 coding downstream 58771 40041739 ~ 40151727 (+)
G977071 NA non-coding upstream 16012 39964264 ~ 39964696 (+)
G977018 NA non-coding upstream 91509 39888983 ~ 39889199 (+)
G976977 NA non-coding upstream 120619 39859716 ~ 39860089 (+)
G976960 NA non-coding upstream 131298 39849094 ~ 39849410 (+)
G976935 NA non-coding upstream 166101 39814065 ~ 39814607 (+)
G977115 NA non-coding downstream 60795 40043763 ~ 40044055 (+)
G977120 NA non-coding downstream 73423 40056391 ~ 40056599 (+)
G977121 NA non-coding downstream 73883 40056851 ~ 40057062 (+)
G977122 NA non-coding downstream 74234 40057202 ~ 40057521 (+)
G977125 NA non-coding downstream 77563 40060531 ~ 40060800 (+)
G976017 NA other upstream 922697 39057676 ~ 39058011 (+)
G974184 NA other upstream 1917608 38057798 ~ 38063100 (+)
LOC110535015 LOC106578726 other upstream 1937378 37866715 ~ 38045713 (+)
lztfl1 LOC106590188 other upstream 2145373 37813177 ~ 37835340 (+)
G973918 NA other upstream 2301340 37651138 ~ 37679368 (+)
G978255 NA other downstream 784868 40767836 ~ 40768229 (+)
G978396 NA other downstream 1020108 41003076 ~ 41016088 (+)
G979689 NA other downstream 2095524 42078492 ~ 42078855 (+)
G979965 NA other downstream 2545552 42528520 ~ 42533308 (+)
G980019 NA other downstream 2648856 42631824 ~ 42636709 (+)

Expression


Co-expression Network