LOC110535691 (LOC106580179)


Basic Information

Item Value
gene id LOC110535691
gene name LOC106580179
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 39984585 ~ 39990217 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620866.2
TCCCTCGCCGTTTTTGCCCGTTCGTGTCACGTGTCCCACACCCCAGCATAATCGAATCCGCCCATTGAGTCGTGATGATCTAACCAGTGTGGTGGGTCGACAAATTTGCCCGCCCCCCTCAAAGAACATTGTAGAAAAATTGCCATACTAGCTAGTTTTTCTTGTGTTATTTCCTCTGGGATAGATTTAACGGGCGGGAACATCTACAACACAACAAGCTGATCAACGAAGAAAAAGAAGGCATCGCAATCGACTTCGGCTGCTGGACAATGTTGGCTAGCTAGCGTAGCTGTACATTAAATACCAAGCGGGGAGGATGTTCTCTGGCCTCACCGTATTTCTTGATATTTAAACTGGATAAAACATCTAGATATACGTCGATTTACACATGGTTCTTTCGGAAAATGACATGCAGAATTAAGGCTAAAAAACtgcttgatgaaattgaaaaggACGTCGGACAGCGTAGACTGAACACGCCTAGCTGGGGCGTATTCATTACGCCGATTCTTTTGCAAAACGTTTCTCAGACGGAAGCGAACGGGACGAAACAGGGAGGGATCTATctgcatttgtccaatagaaactcgttTTAGTTGCAAAACGTAATGCTTTTCAACTGTTttgctaatgattacacccctggGATGTATTCATTACGCAAACGTCTTACCGTTTAACAACCAAACGGAACGAAACAGGGCGGGACCTACCTGGATGTACCCAGTAAACTATCGTTTCCCGTTTGGAGTTATCGGGTTGGCAACAGATTTTGCGTAATGATTACACCCATGCTATTTGGTTGAACAGTGCCGTAACTAGCTACCCAGCCAATTTTATTAAGTTAGCTATATTTCCGTGGCCAGCAAACTTTCAATAGGGAAGAGGGCAAAGCAGAGCATGCCAATGTTAACAAATACGTTTTTCAGTCGCTAGCTGGCTGATTTCTGCCTCCCGTTTGGCTAATTTAGCAATACGTAGTTAGCTAGTCCCCTAGTATCGAGTGCCAACCTATTCAAGGCTAGCTAGCGCCACAAACAAAGGCTTCTGCTCAACACCTGCCACATACTTTTAAGACGCTCGTGTCTTAATCAACTGTGTCCGTGAACAAAGCTGCATAAATGGATTTACAAACGGCGGTGTTCAATGCAGCCAGAGATGGCAAGCTACGGTTGCTTCAGAAACTTTTGGAGAACAAAACTGGCCTAGAGGTTACCAAATTAATGGCAGAGAAAACCAACGGTGCCACCTCTTTGCTTATGGCTGCAAGATACGGACACCTGGATTTAGTGGAATATCTTTTGGAGTGTTGCTGCGCACCCGTTGAGGTTGGGGGGTCAGTGAATTTCGACGGAGAGACTATCGAAGGTGCCCCGCCTCTATGGGCTGCCTCAGCAGCAGGACACCTGAAAGTCGTGCAGTCTTTACTTGGCCACGGTGCCTCTgtgaacaatacaacactcaCCAATTCCACCCCCCTGAGAGCAGCCTGCTTCGATGGGCATCTGGACATTGTAAAATACCTGGTAGAACACAAGGCAGACCTGGAAGTAGCAAACAGACATGGTCACACATGCCTCATGATCTCGTGTTACAAAGGACACAAGGAAATTGCCCAGTATCTATTGGAGAAAGACGCTGATGTTAACAGGAAAAGTATTAAAGGTAACACAGCATTACATGACTGTGCTGAATCTGGCAGCTTGGAGATAATGAAGATGCTGCTAAAATATGGTGCCACCATGGAGAGGGATGGTTATGGAATGACCCCACTGCTGTCTGCTAGTGTGACTGGCCACACTAACATTGTTGACTATCTGACACAACACCAGCAAACAAACCACATGGAGAGGATAAACGCCCTCGAACTGCTTGGTGCTACTTTTGTGGACAAAAAGAGGGATCTTCTTGGGGCATTAAAGTACTGGAAGAGGGCCATGGACCTGAGATACAGTGACAGCAAAAATGTTCTTAACAAAGCTGAGCCAAAGCAGTTGATCATGGCCTATGACTATGCCAGGGAAGTAAGTAATGGGGAGGAGCTAGACAGCCTGATCTCAGACCCTGATGAGATGAGGATGCAGGCCCTGCTCATTAGAGAGCGCATCCTGGGCCCCTCCCACCCCGACACCTCTTACTACATCCGCTACCGGGGAGCTGTATACGCTGACTCTGGGAATTTTGAGCGCTGCATCAACCTTTGGAAGTATGCCCTTGACATGCAGCAGAGCAACTTGGACCCCCTCAGCCCCATGACAGCCAGTAGCCTGCTGTCCTTCGCTGAACTATTCTCCTTCATGCTCCAGGACCGTGCTAAAGGCCTTCTGGGCACCTCGGTCTCCTTCAACGACCTCATGGGCATCCTCAGTAAGAGCGTGCTGGAGATTGAACGTGCGGTGAAACAAACCCAGCCTGACCCGGCCCAGCTCAGCAAGGCCCTCTCCATCATCCTGCATCTCATCTGCCTGCTGGAGAAGGTCCCCTGTACCGTGGAGCAGGACCATTTCAAGAAGGAGACCATCTACAGGTTCCTCAAGCTGCAGCCCTGTGGGAAGAATGGCTACAGCCCGCTCCACCTGGCCGTGGACAGGAACACCACCTGCGTGGGCCGCTATCCTGTCTGTAAGTTCCCCTCTTTCCAGGTCACCTCTATCCTACTGGAGTGTGGGGCGGACGTCAATTGCCGCGACGAGGACAACAACAGCCCCCTGCATGTGGCCGCCGCCAACAATCACCCGGACATCATGAACCTGCTGATCGCCTGCGGCACGCACTTTGACAGCACCAACTCCCTGAAGCAGACGGCCTGCGACCTGCTGGACGAGAAGGAGATGGCCAAGAACCTGATCCAGCCCATCAACCACACCACCCTGCAGTGTCTGGCTGCACGGGCTATCATCAAGCACAGCCTCTGCTACAGAGGAAACATCCCAGAGAAGCTGGAGGCCTTTGTGCTTCTCCACAGATAATGACTATGAAAGATGTGCGCCACCATTCTCCTTGCCCCACGTGCACTCTTTTTGATTGTATTGGAGTCCATGATGAACATTGTGTgaactccccccccctcccctgcgAAGCAAGAATTAAAAAGCAACTGCCCATAAAAAGCAACTTCTTGCTTCTTGTTTTGAAAACAGCCTATCGATATGAGTCAAACATTTAttatagtgtcaaaattgactacaaagtgtaaataggataattttggtcatagtCTGCGAGATGATAGGGAAAAAAACGGTATGTCATGGAATGAGGAGTACCCTAAAAAAAATTCTCGGGTTGGGTTTatttcaatcctgcccacagcTGACAGCACCCAAGTTATCATCAATTTGGAGCAGAGCTGCACGCAACCATAGTAGTTCCCATGGCCAATTTGGTTTGACATTAGATATTTCtttggggctagttagggaccatcagcaaattacacaatgtacatggcTGAAGAAAataggccaaatcaggaagtgcagccCCCCTTTATAGCTCTGTGGCAAACTGATAGGGATTTTTAAAATATGCGCATGCACAATATTTTTAGCTTACTAATTTCTACATTTTCCATGCTATTTATTAAGATATCATTGAGAGATTTCTCCATGCCCCcatctctttgtttctttctaTCTATGCAAAGATGGTGGAATGCTGGGACTTTTTTCCATTACTATGTTGCCAATATATGGACTCTTAACTTTAATCATACATTCTTTATGCTCTCATTCAATGGTTATGTTGTCATGGTTTTGTGTCGGCGTAGTTGAGTGTAATGGAATTAACTAATTTCTCTATCAAAAAACCATGAAGCTTTATGAAGTGGTAATGTTTGCAAATACCATAAGTGCTTTATTCCTCCTATGCACAGGCTATGATATGCGACTGTTCTGTGTTAGCACTTGTCTGTGCAATATTTAGCATCATATGTGGTGACTGCCTGTTTCTTTGTTTCCATAATTTGTTACACTAAGCAAAGAGGGATGTGACAATTACTGAATACTGTTCGATTGGTAGTGTTGCGTGGTTTCATGTGTTAACTCTAAAAGGTAATTGTGTGCAGGTTTTGAGTAGGAGTGTATGCAGCCCATATGCTTCATGTTATTGATCTTTGAGCCTGATTTGTTCTATGGTGAGCTGAGCACAAAAACAATAGACACAGGTTAGTTGGATACTAGTATGGCCGTGCATGTAGTTTGAGTTTACAGGAAATTCATTGACATTGAGCTTTGTACGACATATCAATTATCGTATAAACTCTTCAGAGCTCTGACTAACCCAAACGTGAAACCTTTATATTTATCCAATTGTATTCTAATTGAAAAGAGGGGAGGCCATGTACAGTGGGGCTGAGCTTTGTGAAATAACCTTGCACATTAGCTTTATTCGTGTGGTTAAAGGGCTTTTCATATTTTTAGAAATACATTTCACCGAACCATACAAATGTACAGTTCCACCAGGGAACTTGCTTTAATTCTGCACTTTATTACAACAGACTTTAAGACTTCATATGACAAAGTGACATATATCAAGTTCATATTTTAAGAACTGATTTGACAATAAACCCATATTGCACTTGTCCTCATTGCCCCAGTGTTATCAATCAGCCCCAGATAGCTATGCAACAGGATGAAACTTTTGTGGTGACTTCCCTGCACACACCTAATTTTCTTTTCCCAGCACGTTAAAAATATTGCACAGTTACTGGATGTTCTTTTGATGAGTCATGATGAGTAATGCATGTAGCAGGTAGGGTGTTGCTCTATGACCACAGTAGGCCTCTGTAGCTGGCCATGGTTGGTTATGTTATTGTTTTTCTCACTGTTCAACTTGTCTATCTTATTTGTGTAAAACATGGGTTACGTGTCAACTAGGGGTTCTTTGTCATATGTTTGATCTCTTCAACTTTTGTCAACTCTGCTGAACAGTAGCCTAATTCTTCTCTGGAATGTTCAAGTGCTAATTTAAAACTGAAACAAGGTT

Function

NR:

description
protein fem-1 homolog C

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620866.2 True 4986 mRNA 0.45 2 39984585 39990217

Neighbor

gene id symbol gene type direction distance location
LOC110535690 LOC106580180 coding upstream 1617 39980708 ~ 39982968 (+)
LOC110535689 LOC106580183 coding upstream 35413 39941590 ~ 39949172 (+)
LOC110536621 NA coding upstream 146753 39836206 ~ 39837832 (+)
LOC110535018 LOC106580184 coding upstream 197298 39694910 ~ 39787287 (+)
LOC118937443 NA coding upstream 324335 39657610 ~ 39660250 (+)
LOC118937349 NA coding downstream 8248 39998465 ~ 40000628 (+)
LOC118937386 NA coding downstream 14836 40005053 ~ 40014741 (+)
LOC110535019 LOC106580173 coding downstream 25249 40015466 ~ 40038754 (+)
ccser1 LOC106580172 coding downstream 51522 40041739 ~ 40151727 (+)
grid2 LOC106580171 coding downstream 198104 40188321 ~ 40743994 (+)
G977071 NA non-coding upstream 19889 39964264 ~ 39964696 (+)
G977018 NA non-coding upstream 95386 39888983 ~ 39889199 (+)
G976977 NA non-coding upstream 124496 39859716 ~ 39860089 (+)
G976960 NA non-coding upstream 135175 39849094 ~ 39849410 (+)
G976935 NA non-coding upstream 169978 39814065 ~ 39814607 (+)
G977115 NA non-coding downstream 53546 40043763 ~ 40044055 (+)
G977120 NA non-coding downstream 66174 40056391 ~ 40056599 (+)
G977121 NA non-coding downstream 66634 40056851 ~ 40057062 (+)
G977122 NA non-coding downstream 66985 40057202 ~ 40057521 (+)
G977125 NA non-coding downstream 70314 40060531 ~ 40060800 (+)
G976017 NA other upstream 926574 39057676 ~ 39058011 (+)
G974184 NA other upstream 1921485 38057798 ~ 38063100 (+)
LOC110535015 LOC106578726 other upstream 1941255 37866715 ~ 38045713 (+)
lztfl1 LOC106590188 other upstream 2149250 37813177 ~ 37835340 (+)
G973918 NA other upstream 2305217 37651138 ~ 37679368 (+)
G978255 NA other downstream 777619 40767836 ~ 40768229 (+)
G978396 NA other downstream 1012859 41003076 ~ 41016088 (+)
G979689 NA other downstream 2088275 42078492 ~ 42078855 (+)
G979965 NA other downstream 2538303 42528520 ~ 42533308 (+)
G980019 NA other downstream 2641607 42631824 ~ 42636709 (+)

Expression


Co-expression Network