LOC118937349


Basic Information

Item Value
gene id LOC118937349
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 39998465 ~ 40000628 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034626.1
tttACATCCAGTGATGTAAAAGAGCCCAGTTTGACTGGCATGTTCACGAGCAAGCAGTAAATTGCCCTTTGCCTCTTAGGCCGCCCGTTGTGAAtcgcttgtgggcgtgctggcagcATATAATACCTTTTTGATTGAGCGTCAATAATTCAACATATGAAGTATgtatgaaggtctggttattAAATGCCTAAATAGTTCGATAGTAATATGCTTTTAAGACGCTCTGGTGACGAACACACTTTGCTTCCCTGTTTCCAATTGTCCACATGGatgggagaacctattcaagtaagtaacGTTAAATACATttcgaaaatgtaaaaaaaaaaacgatttattATTAGTTAGCTACAGTGCAGGCTAACTCATACGCTGCTAAATGAgctagccaacttgacataagGTGGGTGAAAAGATAGCAGCCCCAACTCAAAGCGAGAGAGTAGGCTATTCTGGATAGGGAAGGTACTTGTGTAGTTCCAGTCCCTAGAAGTGAGGCTGGAGATAATAGTAACATAATATTCAGTGCAGTGTAATGAAGTCTGTTTCTTGTGAGGctttctgtcctcagataaagAGAGCTATGAAAGCCTGTCTAGAGATAAAGATGTCCCAATGAAGGGCAGCGGTTCAAAGTCCTGGCCCTGGGGACTcaaaggggtgcacgttttgctGATACAAATGATCAACTCttcatcaagcttcaagtgATACCTTGTAACGATTGCCTACAGTTAAGATGTAGGGCACTGcaaggttgggtgaccagggcCACCTGGGACTGCCTCCTGGAGGAATTCAGGTGTGTGAAGGCTAACTGTGCTGTCCTGCATAACTTCATGAGAATGGACACGTGGACCAGGAGGGGATCTGCAGCTCGCCGCTGTGTGCCAGAGGAGATGTCTACTGCTCTGCAGGATGTTTCAAGGATGGGGTCCAACAACGCAGCAAGAGGCAATCCGTGTGCGGGAGATCTTCACCTCCTACTTCTTCAAAGAGGGTGCTGTTCCTTGGCAACActatagactacactatgcacaaccaaaggctcttttaagagccatccACATTACAATAAGAGTATTCTTCCATTTACTTAGCGATGTCAACTGCAGTTATTACATTCCCAGTTTCTCTCCCTTTGATTTCTACTTCTCAGGTGTGGATGCTGTTTAGGTAAGGGTGTAATGCCAAAACAAAAACAGGCTATTTTAAGTCACCCATATTGAAAAAAATTAGAACAATTAGACACCCTATaacccacacctacacactcatgtatcaatctgattgatggattgtgttgtgcagtaagcaggctcaggtgtatacctggctccttccaccttcaaagAATAGGTAAGAGAGCctaccatggagaatagtaagacacttCCTTATTTCTATAACTACGCAATATTGTTTGTcctcgtgtgtctgtgtgtaacagtatagcttcccatccctctcctcgccccaacctgggctcaaaccagggaccctctgcacacatcaacagtcaccctcgaagcatcgttacccatcgcttcaCAAAAGCAGCGGCCCTtgtagagcaaggggaaccactacttcaaggtctcagagcaagtgacgtcaccgattgaaacgctattagcgcgcaccaccgctaactagctagccatttcacatcggttacatgtgcatgtttttcagcataaagtactctgcagccacttagtgtggacacctGGTGAGGCCTCGcacacagattcctgttgaacGCTGTCTCTTTAACtaccttattttctcaataaGTCTTTccccttcacttcatccctctctccccccttctccctaaatcctctaagTGATATCAGCTGTGTCTGTGAACCCttcccgcatctgaactggctacacagaaggcacagcatgatcagagttgaggtcacttggtcgggtcaacaggaactattattaaagagatgctttacattgaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034626.1 True 1983 mRNA 0.45 2 39998465 40000628

Neighbor

gene id symbol gene type direction distance location
LOC110535691 LOC106580179 coding upstream 8248 39984585 ~ 39990217 (+)
LOC110535690 LOC106580180 coding upstream 15497 39980708 ~ 39982968 (+)
LOC110535689 LOC106580183 coding upstream 49293 39941590 ~ 39949172 (+)
LOC110536621 NA coding upstream 160633 39836206 ~ 39837832 (+)
LOC110535018 LOC106580184 coding upstream 211178 39694910 ~ 39787287 (+)
LOC118937386 NA coding downstream 4425 40005053 ~ 40014741 (+)
LOC110535019 LOC106580173 coding downstream 14838 40015466 ~ 40038754 (+)
ccser1 LOC106580172 coding downstream 41111 40041739 ~ 40151727 (+)
grid2 LOC106580171 coding downstream 187693 40188321 ~ 40743994 (+)
LOC110536622 LOC106580274 coding downstream 748107 40748735 ~ 40750507 (+)
G977071 NA non-coding upstream 33769 39964264 ~ 39964696 (+)
G977018 NA non-coding upstream 109266 39888983 ~ 39889199 (+)
G976977 NA non-coding upstream 138376 39859716 ~ 39860089 (+)
G976960 NA non-coding upstream 149055 39849094 ~ 39849410 (+)
G976935 NA non-coding upstream 183858 39814065 ~ 39814607 (+)
G977115 NA non-coding downstream 43135 40043763 ~ 40044055 (+)
G977120 NA non-coding downstream 55763 40056391 ~ 40056599 (+)
G977121 NA non-coding downstream 56223 40056851 ~ 40057062 (+)
G977122 NA non-coding downstream 56574 40057202 ~ 40057521 (+)
G977125 NA non-coding downstream 59903 40060531 ~ 40060800 (+)
G976017 NA other upstream 940454 39057676 ~ 39058011 (+)
G974184 NA other upstream 1935365 38057798 ~ 38063100 (+)
LOC110535015 LOC106578726 other upstream 1955135 37866715 ~ 38045713 (+)
lztfl1 LOC106590188 other upstream 2163130 37813177 ~ 37835340 (+)
G973918 NA other upstream 2319097 37651138 ~ 37679368 (+)
G978255 NA other downstream 767208 40767836 ~ 40768229 (+)
G978396 NA other downstream 1002448 41003076 ~ 41016088 (+)
G979689 NA other downstream 2077864 42078492 ~ 42078855 (+)
G979965 NA other downstream 2527892 42528520 ~ 42533308 (+)
G980019 NA other downstream 2631196 42631824 ~ 42636709 (+)

Expression


Co-expression Network