LOC118937386


Basic Information

Item Value
gene id LOC118937386
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 40005053 ~ 40014741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118937386
ATGCTCGATGACTGGTCGGGCATGGACATCAAGAAGGCCATCGACTACATCAAGAGAAtctgtctgtctgtctgtctgtctgtctgtctgtcaggtggGTCCACATTTTGTGCCGTCGCCGCCCTGTGTCTGATGGGCAAATTAGAGGAGATGTTCAGCGAGAGTGAGCTGAACAGGATATGCCGCTGGTGCATGAGACAGCAGAACGGCTTCCACGGCCGCCCCAACAAGCCCATCGACACGTGCTACTCCTTCTGGGTGGGCGCCACACTCTAGCTCCTAGACGTCTTTCAGTATACTAATTTTGAGATGAACCTGGAACTACATCCTGTCCACTCAGGACCATTTGGTGGGCGGCTTCACTAAATGACCAGACAGTCATCCAGACCCGCTGCACGCCTACTTTAGGATCTGCGGCCTGTCGTTGATAGGGGAGGCCAACCTGCAGCAAGTTCACACCGCCCTGAACGTGAGCGAGAGAGCCTTTGAGTATCTGCAGCATCTGCACCAGACGTGGAGAGACGCCTGAAGCTGACAGCAGCAGGCCTCCCACAACCACACCCGAGCCTCCAAGTACTGCCACCATACTCCCTAAGCCATGTGTAGCAGTTCCCTCTGTTACCTTAGAAATAGAAACGATAGTGGGTCTCACTGAAACAGGGGGGAAAGGTGAATAAATCATTTATTGGGCCCATCAATAATTGAGCGCAAACTGGCGGAGTAGATGCTCAGGCCGGGCGAGCGCTAATTCTGCTTAGTGTCTTTCGAGACAGATTCAGTgttacaatgaaatgctttgtagatactgtatttatttccGTTCCTCTGAGACACATGCTCTTTAAAAGACTGAAATTCTAGCTGCTAGAAACACCGTAGGTTCTCTGCTACATTCTCAAAAGATCTTTAAGACTTTTTGCCTTGTATtacgtgttgttgttttttggtcAAAATGTTTTTGTCAGAAACCAACATGGTCACTACACCGATCAAGCCTCTTGTGTTTGTCCAGGATAAGTTGTTTTTTAGCATCTGTGTATTTTGTTAACCTGTGTAGCTGGCTCCAGTAATATTTTGGGGCTATGGCAGTTTTCTGTACTCCTAGGCTGACAAGTCATGAGACCACTCCCTCAAACTTCATTCCTTTCTCTGAAATGTTCTTCACACAGCAAAAACTGGGCTCTCTAACCTGAGGGGCCTTTACAGTATGGATTTGCCTGTCGCTGCAGATGTGTTATTGGGTCAAAAGACACATGAATGTTTGTCTTGACATGAACTATACAGAAAAAAGTTACATTGAATTAATTTTGTCTATACATTATAGAAATATTGAGTGTAGATATTATGTAAATGTCACCTTTATCATGCAAGTGCTCAATCGTATCACTGCTATTTCAGTGAGGTAGGTGGATTTGATATGCAATGTTATGTGAAATAAATAATAGCATTTTCTCTGTATCATGTCAAATCAACTAAACTTGTGCTAAAACTGTCTTGGAAGTGCATATTTATGTGAAACATGCCTGCCTTTTCATTTGTGCAGAGTGCGAGTTAGAAAGAAGCCTGTTTATGTTTCAGTTTAAAGAAACAGTAAATTGTCATCAGAGGTTGTTTAGTCTTGGATCTAATCAAGGAGATTGTCCTTGGGGTCTGCAGTTTGCTGGTTTGCCAGTCATCAGTTAGTTTATCCACTCACCACTTTAATCAGCATCTCATGAAATCCAGCATCCCTCCCCTATCTTGATTTTTACTGCAAAGTGAAGGTGTGCCAACAAAATCAGCACGATGACAGAGTATAAAACAGAAGTACTTTATCAGTAGTACAACATTGCCCTGGTCTCAGCTATGCACTCTTAATTAAGGCTGCAGTCCTTATGAAGACTAAGGAAAATGTCATTTTCTCTGCTACAAATAAAAAGTATACAGCATCTGACCTTGCATGTGACATGACATGCCATCTCGAAGCCAAGGACGAATTTACCTAAAAGTTACATAATTGTACGAGTAACGCATTTCTTAAGCCCTTTTAAACCAGTAGGTAAATAATGACTCAATAATTGAATGACTCAATCACACAAGCCAGT

Function

NR:

description
geranylgeranyl transferase type-1 subunit beta

GO:

id name namespace
GO:0001955 blood vessel maturation biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118937386 True 2084 mRNA 0.43 4 40005053 40014741

Neighbor

gene id symbol gene type direction distance location
LOC118937349 NA coding upstream 4425 39998465 ~ 40000628 (+)
LOC110535691 LOC106580179 coding upstream 14836 39984585 ~ 39990217 (+)
LOC110535690 LOC106580180 coding upstream 22085 39980708 ~ 39982968 (+)
LOC110535689 LOC106580183 coding upstream 55881 39941590 ~ 39949172 (+)
LOC110536621 NA coding upstream 167221 39836206 ~ 39837832 (+)
LOC110535019 LOC106580173 coding downstream 725 40015466 ~ 40038754 (+)
ccser1 LOC106580172 coding downstream 26998 40041739 ~ 40151727 (+)
grid2 LOC106580171 coding downstream 173580 40188321 ~ 40743994 (+)
LOC110536622 LOC106580274 coding downstream 733994 40748735 ~ 40750507 (+)
LOC110535695 LOC106580170 coding downstream 772586 40787327 ~ 40815032 (+)
G977071 NA non-coding upstream 40357 39964264 ~ 39964696 (+)
G977018 NA non-coding upstream 115854 39888983 ~ 39889199 (+)
G976977 NA non-coding upstream 144964 39859716 ~ 39860089 (+)
G976960 NA non-coding upstream 155643 39849094 ~ 39849410 (+)
G976935 NA non-coding upstream 190446 39814065 ~ 39814607 (+)
G977115 NA non-coding downstream 29022 40043763 ~ 40044055 (+)
G977120 NA non-coding downstream 41650 40056391 ~ 40056599 (+)
G977121 NA non-coding downstream 42110 40056851 ~ 40057062 (+)
G977122 NA non-coding downstream 42461 40057202 ~ 40057521 (+)
G977125 NA non-coding downstream 45790 40060531 ~ 40060800 (+)
G976017 NA other upstream 947042 39057676 ~ 39058011 (+)
G974184 NA other upstream 1941953 38057798 ~ 38063100 (+)
LOC110535015 LOC106578726 other upstream 1961723 37866715 ~ 38045713 (+)
lztfl1 LOC106590188 other upstream 2169718 37813177 ~ 37835340 (+)
G973918 NA other upstream 2325685 37651138 ~ 37679368 (+)
G978255 NA other downstream 753095 40767836 ~ 40768229 (+)
G978396 NA other downstream 988335 41003076 ~ 41016088 (+)
G979689 NA other downstream 2063751 42078492 ~ 42078855 (+)
G979965 NA other downstream 2513779 42528520 ~ 42533308 (+)
G980019 NA other downstream 2617083 42631824 ~ 42636709 (+)

Expression


Co-expression Network