Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110535697 |
| gene name | LOC106580168 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 40845782 ~ 40876219 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| id | name | namespace |
|---|---|---|
| GO:0000165 | MAPK cascade | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004707 | MAP kinase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021620878.2 | False | 4898 | mRNA | 0.50 | 7 | 40845782 | 40876219 |
| XM_021620877.2 | False | 5108 | mRNA | 0.50 | 7 | 40846346 | 40876219 |
| TU1113977 | True | 1408 | lncRNA | 0.41 | 1 | 40874630 | 40876037 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110535696 | LOC106580169 | coding | upstream | 10473 | 40827054 ~ 40835309 (+) |
| LOC110535695 | LOC106580170 | coding | upstream | 30750 | 40787327 ~ 40815032 (+) |
| LOC118937351 | NA | coding | upstream | 43887 | 40798590 ~ 40801895 (+) |
| LOC110536622 | LOC106580274 | coding | upstream | 95275 | 40748735 ~ 40750507 (+) |
| grid2 | LOC106580171 | coding | upstream | 101788 | 40188321 ~ 40743994 (+) |
| arrdc3a | LOC106580165 | coding | downstream | 36905 | 40913124 ~ 40921426 (+) |
| LOC118937444 | NA | coding | downstream | 65781 | 40942000 ~ 40943238 (+) |
| lysmd3 | LOC106580159 | coding | downstream | 295915 | 41172134 ~ 41176136 (+) |
| mblac2 | mblac2 | coding | downstream | 308881 | 41185100 ~ 41188623 (+) |
| LOC110535023 | nol6 | coding | downstream | 689973 | 41566192 ~ 41567177 (+) |
| G978246 | NA | non-coding | upstream | 82433 | 40763089 ~ 40763349 (+) |
| G977409 | NA | non-coding | upstream | 657594 | 40187916 ~ 40188188 (+) |
| G977405 | NA | non-coding | upstream | 661098 | 40184447 ~ 40184684 (+) |
| G977403 | NA | non-coding | upstream | 661966 | 40183587 ~ 40183816 (+) |
| G977156 | NA | non-coding | upstream | 718536 | 40126985 ~ 40127246 (+) |
| G978324 | NA | non-coding | downstream | 457 | 40876676 ~ 40876937 (+) |
| G978329 | NA | non-coding | downstream | 9489 | 40885708 ~ 40890102 (+) |
| G978350 | NA | non-coding | downstream | 35034 | 40911253 ~ 40911476 (+) |
| G978357 | NA | non-coding | downstream | 51709 | 40927928 ~ 40928133 (+) |
| G978386 | NA | non-coding | downstream | 99204 | 40975423 ~ 40975839 (+) |
| G978255 | NA | other | upstream | 77553 | 40767836 ~ 40768229 (+) |
| G976017 | NA | other | upstream | 1787771 | 39057676 ~ 39058011 (+) |
| G974184 | NA | other | upstream | 2782682 | 38057798 ~ 38063100 (+) |
| LOC110535015 | LOC106578726 | other | upstream | 2802452 | 37866715 ~ 38045713 (+) |
| lztfl1 | LOC106590188 | other | upstream | 3010447 | 37813177 ~ 37835340 (+) |
| G978396 | NA | other | downstream | 126857 | 41003076 ~ 41016088 (+) |
| G979689 | NA | other | downstream | 1202273 | 42078492 ~ 42078855 (+) |
| G979965 | NA | other | downstream | 1652301 | 42528520 ~ 42533308 (+) |
| G980019 | NA | other | downstream | 1755605 | 42631824 ~ 42636709 (+) |
| G981690 | NA | other | downstream | 2784155 | 43660374 ~ 43715297 (+) |
| G978312 | NA | non-coding | upstream | 11783 | 40858944 ~ 40862847 (+) |
