lysmd3 (LOC106580159)


Basic Information

Item Value
gene id lysmd3
gene name LOC106580159
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 41172134 ~ 41176136 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620882.2
gatTTGGTAACTAGGGACGACAATATCTAGTGGTCAATGCAAGAATTGGAGTTCCTATCCACGGACGTCATCACGTTAGTATTCTGTTGACGTGGCGTAGCTAAACAAACGAACGCCAGTAAACCGGGGGAAGAATGGATGTGGTTTAGGTCGTCGACGGAAAAGTGCTCATGTTTTCAGTGAAAAATGACTGGGAGAAGCCAGCACTATGGTTTCCAGTCAGCCACGACGATGCAGCCTGCCAATGGAGGACATGCCTACCTATTTGGGAACAGCGCTGAGAACGATCTtgctgaggaggatggagagagctaCGAGCTGCGCACCCGAGGCCGGGACCGGAGGAGCACCTCCAGGGAGAAGTCAGACGACATTATCCACCTGGTCCGAGACATTAAAGAAGGGGACACTCTGAATAGCTTCTCCCTGCAGTACCACTGCTCAGTAGCAGACATCAAGAGGGCCAACAACCTGTTGACAGAGCAGGACTTCTTTGCACTGAGATCCATCAAGATCCCTGTGAAACGTTTCAGCGTGCTGACAGAGACCCACAACACTGCTCCTCTCAAATCTGCTTCCCCCACAGGCCACCGACGCATCCACCAgccccccatctccacagagacttgcacagactcctcctcctcgtccacaGACAGTGTGGGCAGCTTCCTGCAGGAGAAGGACAAGGACATTGAGCTGCTGGTCAAGTCCACTGGCACCTCCAGAAGCAGCCTGAACGAGGTGGTCTCCTCCCTGACCCTCCAGCAGCCCTTATTACTGGGGGAGCCTGACTTCAAGCCTATCCTCAGGAAGGACCCCTACCATGGGGCAGACTGGGGCATGAGGTGGTGGATGGCGGTGGCCATCATGGTGGTGGTTGGCATCGTCACACCAGTGTTCTACCTGCTGTATTACGAGGTGCTGATGAAGGTGGACGTGAGCCATCACACCACCACGCCATTGGTCAATCCGAATGGCATGCAGAATGCCCAGATGCCTGAGCCTGTGGCAATCAATGGAGGGCCCAACTCAAGACCTCACGCTGGAAACGTACCTAAATCAGACTCACATGGACACAATGATGTGGATGACCACCTTGGCCCCAAGAAAGAGAAAACGTAGTGAGGGTGAGTCACACTTAAGGAGTGGGAGATATTTCTGAGCAGTTCTATATGGTACAAATTCTCTGAGAATAACTTTATGGGGAACAGAATCCATTGGAAAATTATGGAGGGGAATAACGGAATTTTCCgtggacatacagtatgtatgtttttttaaagtttttaaaGCACTTTTTCTTTTTGTTGCACAGAGGTACCCAACTGCTTATTGTCCCCTTTGTCAGCTAGCTGTTGGAACTGTTTCTGTAACGCTGTCTAAAGGGTTTGTGATacttgggatgtccctaccccTTAACCCCTAAGTTACCATATGAGGTTTCAACTTTAATGGGTTGATGTCAGAGTTGGACATCCCAATGACCCTGTCTGTCTAAAGTGAGGGTTATTTTCCTGGTCAGAAAAGTACTGATTGCTGCCACTTATCAATGACAGTAATTTGAGGAATATTGGTCTTATACTTTCAGTATTGTCTAAAATGTGTTACAAATCTTGAACATTgcttgtatatatttttttgcctgTCTAGGGAGAACTGAATTTTGACTCACAAAAACTATATTTCTACTTAGGGCATGGTGACAAAACAGGAAATGCACAATATTCCCAaacactagctagctatattCTAGTGAAATGTTATTTTAGTTCCTTTTCCTCATGTCCATTTCATAAAATCATGTAACAAACAGTATGTGCCTTCAACTTGTGGGACACTACAAAAGGCTGAAAAATTAGTATATTTTGAATAAATTATTGATGCTCA

Function

NR:

description
lysM and putative peptidoglycan-binding domain-containing protein 3-like

GO:

id name namespace
GO:0016998 cell wall macromolecule catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620882.2 True 1890 mRNA 0.47 3 41172134 41176136

Neighbor

gene id symbol gene type direction distance location
LOC118937444 NA coding upstream 228896 40942000 ~ 40943238 (+)
arrdc3a LOC106580165 coding upstream 250708 40913124 ~ 40921426 (+)
LOC110535697 LOC106580168 coding upstream 295915 40845782 ~ 40876219 (+)
LOC110535696 LOC106580169 coding upstream 336825 40827054 ~ 40835309 (+)
LOC110535695 LOC106580170 coding upstream 357102 40787327 ~ 40815032 (+)
mblac2 mblac2 coding downstream 8964 41185100 ~ 41188623 (+)
LOC110535023 nol6 coding downstream 390056 41566192 ~ 41567177 (+)
LOC118936418 NA coding downstream 405591 41581727 ~ 41585824 (+)
LOC110535708 LOC106580153 coding downstream 419400 41595536 ~ 41604715 (+)
LOC118937352 NA coding downstream 450141 41626277 ~ 41632041 (+)
G978488 NA non-coding upstream 48011 41114380 ~ 41124123 (+)
G978479 NA non-coding upstream 65146 41106666 ~ 41106988 (+)
G978387 LOC106580163 non-coding upstream 171857 40978748 ~ 41000277 (+)
G978386 NA non-coding upstream 196295 40975423 ~ 40975839 (+)
G978357 NA non-coding upstream 244001 40927928 ~ 40928133 (+)
G978586 NA non-coding downstream 84907 41261043 ~ 41261242 (+)
G978588 NA non-coding downstream 87666 41263802 ~ 41264028 (+)
G978681 NA non-coding downstream 221192 41397328 ~ 41397623 (+)
G978694 NA non-coding downstream 245356 41421492 ~ 41425683 (+)
G978735 si:dkey-263f15.2 non-coding downstream 297468 41473604 ~ 41499222 (+)
G978396 NA other upstream 156046 41003076 ~ 41016088 (+)
G978255 NA other upstream 403905 40767836 ~ 40768229 (+)
G976017 NA other upstream 2114123 39057676 ~ 39058011 (+)
G974184 NA other upstream 3109034 38057798 ~ 38063100 (+)
LOC110535015 LOC106578726 other upstream 3128804 37866715 ~ 38045713 (+)
G979689 NA other downstream 902356 42078492 ~ 42078855 (+)
G979965 NA other downstream 1352384 42528520 ~ 42533308 (+)
G980019 NA other downstream 1455688 42631824 ~ 42636709 (+)
G981690 NA other downstream 2484238 43660374 ~ 43715297 (+)
G982236 LOC106580137 other downstream 3104789 44280925 ~ 44285969 (+)

Expression


Co-expression Network