LOC110535708 (LOC106580153)


Basic Information

Item Value
gene id LOC110535708
gene name LOC106580153
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 41595536 ~ 41604715 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620898.2
GCCACTGCATtagccatcacacacacacacagtaggaccTACCAACCTGCTGTCACCCAGTCATAATACAGGAGGTTAGCTGAGCAGCACTGAACCATGGGAAAACAGAAGATATTCATGGACAAGCTGGCACATACTTTCCAGATCCGTAACTTGCTGCTGCGCCAGGCCATGGCAGAGTGTCTGGGTACCCTCATCCTGGTGATGTTTGGTTGTGGTGCAGTGGCTCAACTGGTGCTTAGTGGAGGATCTCATGGCATGTTCCTAACTGTCAACTTTGCTTTCGGCTTCGCTGCCACCCTAGGGATCCTGGTCTGTGGCCAGGTATCAGGAGGCCATCTCAATCCGGCAGTAACCTTTGCCCTCTGCCTGCTTGGGAGAGATCGCTGGAGAAAGTTTCCAGTCTACTTCGTCTTCCAGACACTGGGAGCTTTCCTGGGCTCCGGGATCATCTTTGGTCTGTACTATGACGCTCTGTTGAACTATGCTGGAGAACTCATTGTTACCGGGCCCAACGCCACCGCTGGCATCTTCGCCACCTACCCTGGCAAACATCTCACATTGGTCAACGGCTTCTTCGACCAGACGATTGGCACTGCAGCATTGATCGTCTGTATCCTGGCCATCGTGGACCCCCATAACAATCCCATTCCCCAGGGCCTGGAGGCCTTCACGGTGGGCTTTGTGGTGCTGGTCATCGGCCTGTCCATGGGCTTCAACTCTGGCTACGCTATCAACCCTGCCAGGGACCTGGGGCCACGCCTCTTTACCGCTCTGGCAGGCTGGGGCACCGAGGTCTTCACtgcCAACAAGTGCTGGTTCCTGGTGCCCATCTTCGCCCCATTCCTGGGCGCCATCATTGGTGTGGTGGTCTATCAGCTGATGGTTGGCTTTCATCAGGAGGGAGAGGTTCGTGACAGGAAGAGCCAGGATGAGAGAGTTAAACTGACCAACATCAACTCAAAGGACGTCCTAAAGGAAGAGATGTTATGAGCCTCAAAACCTCCAGCATCCTCCattctccaccactaccactaccagcaTCCTATACCCCTAAACTCAGCCTCAGTGGGGTACAGTATGGTCTCCTTGAGGGCCGGTGGGTCCCTTTTCACTCTTAACTCTGACAGCGGTGTGTCTGTTAGTCTGTAAGGAGACAACTACAGTACGCACACACATTATGGACCTCAATCTTTCTCTATAATGTTGCCACAGTATATCTATCTCTAGGCGTCCTTTGTCTTACATTGTAGCTGCATAGTGTCCTTAAGTAAGAGGGGAGGAAGTAAACACTCAAACACAGAATTATATTAATTCAAAATGTTTGGAAATAATCAAAGTTTATAGCCTAGTGTCTTTATCTCTTCTGTTTGGACCGTATTTGATGTTTTATACTAACATAGCGTTTTAATGATTCCGTTGTATTTATATGCTGTGGACAGATAGTACATGTGTCCCGATCAAATGAAATGTGTACGTTTTAGTGAGTCCATGAATTTCAATGTCAACCAGAGGCCTCATGCCATAAGATTTttatactttattttttattaattactAAACTTCATTTTTAAGCCCA
>XM_036935486.1
TGTTGATTTCGTGTTGAATTCACCTGAGTTGACAActtaaccaaatgtaaatcaaaactaaaaGTTGAACTGACGACTGTTCCCAGTGAACTACCTGTGTCACCTTTGTGTGACAGGTGGTTGGACACATGTCCTTCTGGCCCCAGCGATGGTGTGCATGTGCACCATCCAGGGAACAATGCAGTCCTTACATAAACCGAAGAGCTAAGGGGGGGAGAAAACAACAGCAATAAGCTTTCTCTTTATATGAAAGAGTCATTGTGTGCTATTCTTTACTTAAATTGAAGGGATGAGACACCACACGCTGCCACTCGAAACCATGGCTTACCACCCCAAATCATGACTTTCCATACCATGTTACCATGTAGGAGGAGTGATGCTCCACTGGGAAAAGTTTGACGACTTCTTCACACAGTATTTTATTCACACACTTCACTCTTCATTTCCTTTTGTCCCAACAACAGTCTTAATGTATCTGGATTTTGGAAAAGACTGGCGGCATCAAAAGCTACCCTGGAATTTCCTCTCCCTGTgacttcttccctccctccattgctGTTCACTAAAAGGGAACGCATGAGTGACCAGGTGTATCGGTAGACACTCAGAATGAGGACACAGCATGAACTGCCTGACAGTCTGGGGGAATGTTTGGTTGTGGTGCAGTGGCTCAACTGGTGCTTAGTGGAGGATCTCATGGCATGTTCCTAACTGTCAACTTTGCTTTCGGCTTCGCTGCCACCCTAGGGATCCTGGTCTGTGGCCAGGTATCAGGAGGCCATCTCAATCCGGCAGTAACCTTTGCCCTCTGCCTGCTTGGGAGAGATCGCTGGAGAAAGTTTCCAGTCTACTTCGTCTTCCAGACACTGGGAGCTTTCCTGGGCTCCGGGATCATCTTTGGTCTGTACTATGACGCTCTGTTGAACTATGCTGGAGAACTCATTGTTACCGGGCCCAACGCCACCGCTGGCATCTTCGCCACCTACCCTGGCAAACATCTCACATTGGTCAACGGCTTCTTCGACCAGACGATTGGCACTGCAGCATTGATCGTCTGTATCCTGGCCATCGTGGACCCCCATAACAATCCCATTCCCCAGGGCCTGGAGGCCTTCACGGTGGGCTTTGTGGTGCTGGTCATCGGCCTGTCCATGGGCTTCAACTCTGGCTACGCTATCAACCCTGCCAGGGACCTGGGGCCACGCCTCTTTACCGCTCTGGCAGGCTGGGGCACCGAGGTCTTCACtgcCAACAAGTGCTGGTTCCTGGTGCCCATCTTCGCCCCATTCCTGGGCGCCATCATTGGTGTGGTGGTCTATCAGCTGATGGTTGGCTTTCATCAGGAGGGAGAGGTTCGTGACAGGAAGAGCCAGGATGAGAGAGTTAAACTGACCAACATCAACTCAAAGGACGTCCTAAAGGAAGAGATGTTATGAGCCTCAAAACCTCCAGCATCCTCCattctccaccactaccactaccagcaTCCTATACCCCTAAACTCAGCCTCAGTGGGGTACAGTATGGTCTCCTTGAGGGCCGGTGGGTCCCTTTTCACTCTTAACTCTGACAGCGGTGTGTCTGTTAGTCTGTAAGGAGACAACTACAGTACGCACACACATTATGGACCTCAATCTTTCTCTATAATGTTGCCACAGTATATCTATCTCTAGGCGTCCTTTGTCTTACATTGTAGCTGCATAGTGTCCTTAAGTAAGAGGGGAGGAAGTAAACACTCAAACACAGAATTATATTAATTCAAAATGTTTGGAAATAATCAAAGTTTATAGCCTAGTGTCTTTATCTCTTCTGTTTGGACCGTATTTGATGTTTTATACTAACATAGCGTTTTAATGATTCCGTTGTATTTATATGCTGTGGACAGATAGTACATGTGTCCCGATCAAATGAAATGTGTACGTTTTAGTGAGTCCATGAATTTCAATGTCAACCAGAGGCCTCATGCCATAAGATTTttatactttattttttattaattactAAACTTCATTTTTAAGCCCA
>XM_036935485.1
ACCAGATCCTACTgaagggcttcatagcaaaATGTTTGGTTGTGGTGCAGTGGCTCAACTGGTGCTTAGTGGAGGATCTCATGGCATGTTCCTAACTGTCAACTTTGCTTTCGGCTTCGCTGCCACCCTAGGGATCCTGGTCTGTGGCCAGGTATCAGGAGGCCATCTCAATCCGGCAGTAACCTTTGCCCTCTGCCTGCTTGGGAGAGATCGCTGGAGAAAGTTTCCAGTCTACTTCGTCTTCCAGACACTGGGAGCTTTCCTGGGCTCCGGGATCATCTTTGGTCTGTACTATGACGCTCTGTTGAACTATGCTGGAGAACTCATTGTTACCGGGCCCAACGCCACCGCTGGCATCTTCGCCACCTACCCTGGCAAACATCTCACATTGGTCAACGGCTTCTTCGACCAGACGATTGGCACTGCAGCATTGATCGTCTGTATCCTGGCCATCGTGGACCCCCATAACAATCCCATTCCCCAGGGCCTGGAGGCCTTCACGGTGGGCTTTGTGGTGCTGGTCATCGGCCTGTCCATGGGCTTCAACTCTGGCTACGCTATCAACCCTGCCAGGGACCTGGGGCCACGCCTCTTTACCGCTCTGGCAGGCTGGGGCACCGAGGTCTTCACtgcCAACAAGTGCTGGTTCCTGGTGCCCATCTTCGCCCCATTCCTGGGCGCCATCATTGGTGTGGTGGTCTATCAGCTGATGGTTGGCTTTCATCAGGAGGGAGAGGTTCGTGACAGGAAGAGCCAGGATGAGAGAGTTAAACTGACCAACATCAACTCAAAGGACGTCCTAAAGGAAGAGATGTTATGAGCCTCAAAACCTCCAGCATCCTCCattctccaccactaccactaccagcaTCCTATACCCCTAAACTCAGCCTCAGTGGGGTACAGTATGGTCTCCTTGAGGGCCGGTGGGTCCCTTTTCACTCTTAACTCTGACAGCGGTGTGTCTGTTAGTCTGTAAGGAGACAACTACAGTACGCACACACATTATGGACCTCAATCTTTCTCTATAATGTTGCCACAGTATATCTATCTCTAGGCGTCCTTTGTCTTACATTGTAGCTGCATAGTGTCCTTAAGTAAGAGGGGAGGAAGTAAACACTCAAACACAGAATTATATTAATTCAAAATGTTTGGAAATAATCAAAGTTTATAGCCTAGTGTCTTTATCTCTTCTGTTTGGACCGTATTTGATGTTTTATACTAACATAGCGTTTTAATGATTCCGTTGTATTTATATGCTGTGGACAGATAGTACATGTGTCCCGATCAAATGAAATGTGTACGTTTTAGTGAGTCCATGAATTTCAATGTCAACCAGAGGCCTCATGCCATAAGATTTttatactttattttttattaattactAAACTTCATTTTTAAGCCCA

Function

NR:

description
aquaporin-3-like

GO: NA

KEGG:

id description
K02440 GLPF; glycerol uptake facilitator protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620898.2 False 1579 mRNA 0.49 6 41595536 41604715
XM_036935486.1 False 2022 mRNA 0.47 6 41599317 41604715
XM_036935485.1 True 1406 mRNA 0.48 6 41602200 41604715

Neighbor

gene id symbol gene type direction distance location
LOC118936418 NA coding upstream 9712 41581727 ~ 41585824 (+)
LOC110535023 nol6 coding upstream 28359 41566192 ~ 41567177 (+)
mblac2 mblac2 coding upstream 406913 41185100 ~ 41188623 (+)
lysmd3 LOC106580159 coding upstream 419400 41172134 ~ 41176136 (+)
LOC118937444 NA coding upstream 652298 40942000 ~ 40943238 (+)
LOC118937352 NA coding downstream 21562 41626277 ~ 41632041 (+)
LOC118937445 NA coding downstream 65081 41669796 ~ 41699250 (+)
LOC118937354 NA coding downstream 110415 41715130 ~ 41760853 (+)
LOC110535709 LOC106580150 coding downstream 541285 42146000 ~ 42157026 (+)
slf1 slf1 coding downstream 987293 42592008 ~ 42629731 (+)
G979204 NA non-coding upstream 18474 41570821 ~ 41577062 (+)
G979200 NA non-coding upstream 30343 41564785 ~ 41565193 (+)
G979198 NA non-coding upstream 33529 41561596 ~ 41562007 (+)
G979196 NA non-coding upstream 48653 41546616 ~ 41546883 (+)
G979193 NA non-coding upstream 52091 41543118 ~ 41543445 (+)
G979235 NA non-coding downstream 28522 41633237 ~ 41633469 (+)
G979247 NA non-coding downstream 44305 41649020 ~ 41702046 (+)
G979282 NA non-coding downstream 112033 41716748 ~ 41751955 (+)
G979460 NA non-coding downstream 204807 41809522 ~ 41809776 (+)
G979541 NA non-coding downstream 324964 41929679 ~ 41933856 (+)
G978396 NA other upstream 579448 41003076 ~ 41016088 (+)
G978255 NA other upstream 827307 40767836 ~ 40768229 (+)
G976017 NA other upstream 2537525 39057676 ~ 39058011 (+)
G974184 NA other upstream 3532436 38057798 ~ 38063100 (+)
LOC110535015 LOC106578726 other upstream 3552206 37866715 ~ 38045713 (+)
G979689 NA other downstream 473777 42078492 ~ 42078855 (+)
G979965 NA other downstream 923805 42528520 ~ 42533308 (+)
G980019 NA other downstream 1027109 42631824 ~ 42636709 (+)
G981690 NA other downstream 2055659 43660374 ~ 43715297 (+)
G982236 LOC106580137 other downstream 2676210 44280925 ~ 44285969 (+)

Expression


Co-expression Network