slf1 (slf1)



Basic Information


Item Value
gene id slf1
gene name slf1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 42592008 ~ 42629731 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021620908.2
cccccccctcccactagCGCAGTTTACTGTCAAGATAGAGTATTTTCTTCTTAGCACAAGGGTGGAAAACACCTATATTTTGCTCAGTGATAGTCCAATATGTAGCTAGTTTATTAACCAGTATGCACGATTTAATTGTAGTTTCGATAAATATAGCAACATGTTGTTGAACGAATCAAATGTCAGTCTAGAGAAATAAAATATTGACGGCTCGCGAAATGGTATCGACTGTCAAGTCTGGTCATGGCGTCTGAATTTTGGCGCTAGCTAGATAGCGTTAGAGTGGACGTCACATGCACATGCCAAGGATGGTGGACACCAAGCATGTGTTCCAAGTGTCTGGGATCAAGAATCTCCAGAAGAAGGGAAAGTTGCTCCATGGAATCGTTCAACTGGGTGGAAAGTACATTGGTGGCTCTGTTTATAAAGACGGAACTACCCATCTGATTGTCACCCGTGAGCTGCCGAGTGAGAAGTTCATGGCAGCCTGTGCAGGAGgCAAATGGATCGTGACTCCAGAATATATTTTTGACTCTGTTAAGAATGGTTCGTGGCTGCCAGAGGGGCCCTATGAGTTGGACATTGTCTCCAAGGGGGGAGTCCCTGGGACCTCTAACCCAGTAAAggtgtggagggagagggtgacCAGCAGGGCCATGGCTGGGGCCTTCGAGGGTTGGAGGGTCCTCCTGATGGTCAATGAGCCTACTCGCAGAGACATGCTCAGAAGaATCCTAAAAGCTGGGAAGGCCAATGTGTACTcgtaccctcctccctcccatgcTGACGTGACACACGTGTTGACAAAACACGTCACAGAGCATGTGAAGGCCCACAATGCACCGTGCTACTCCATAGAACACATGGCCCTGCATCTTTTTGGGGAGAACGTGTGTTCTGATATGGGTTTAACCTGGACAGAGGGCCAGCCAGAGGAGACACAGGAGGCCAATGATGCACTCTCCACAGACTTTTCAGAGCTGGAGAGCGAGGCCAGGGACTACATCTCTCAAATAGGGGAGCGGAAAAGACTCCCAGATATCCAGAGCTACTATGCCCCCGGACCGTACGCTCAGACTGCTGTAGCCAACTTCAGCAACGTGCAGAGCCTCACTGAGTGTGGTTTATTCACCCAAGCCCTAGAGGAGCTCCAGTTGTACCTGCTGCCAGGGCAGCTCCCCCCAGCTCCATTCCTCCAGCCCCTCATGCGTCACGCTCTCCACGGGGATGCCAAGCCTTTCTTTCTCAGCGAGTTCCGCACGGTTCTCCACAGCATCCTGAGGAACAACCCTCCCTGGGGTTCTCCAGCTAGCGGGACATTCTTCATGAAGGTGCTACAGTGTCCCCAGTGTCGAAAAGGAGTCTGGCCCCTTTTGGAGACATCACTCAGGTTCTGCATGGGTAGCAAGCCCTGTCACTCACTCCCTAGCCCCGCCTCCCCAGAGCTGCTCCGCTTCCATGGTGACCTGCAGGCCTTTATGCTCGAGCTCTTCAAGTGTGACATGTACTCAGCTAGCAAAGGAGAGGCGGGAGGCTTGCGGTCGTCCGTCCTCTACAGGGTGTTCTGGAGCTTGTGGGAGCGCTCGACGCTGGCCTCCAAGGCCGTGCAGCAGATCGCCCAGCTCCTGGTCCAGGCCTCATTGTGGGAACGCTCTGTCTCGGAGGGTCAGGAGAGGGACTGTGAGAGAGACCGGAGGCAGACGCTGGTACTGACCCTGCAGGACACGCTGGGTGTGGTGGTGGACTACTGGTGGCAGGAGTACAGCCGCCTCAACCGCAGCCTGGTGGACAAAGGCCTGGAGGACCTGGCTCAACACATCGCCATCCTCTGTCAGGACCTGCCCCCGGATGTCCTCCAGACGTTTGTTCCCGGGATGGTCCCAACCAGGCTACGGATGGTCACGGCAGACGCCATCTTTAGGAACGTGTGCTGCAGGAACGGCATCATCATAGGAGCAGAGCCCATCTCGCTAAGGAAGATTGTGTCCTCCTACCTGCCAGCCCTGGGGAGGCTGTGCGCGGTCAGGACAGGTGGCTCCAGAGTCTCCCGGGCAGACAGCGGGGGCCCTCGGCCTGGGACTGAACCCACCTCCTGCAGCTGGAGCACCCAGGGGACTGATACAGGAATGGCCAGCAGTCTGGTTAACGGAGCAGGTCTGGGCAAGGAGAACATCCCCAGAGGTCTCAACCGTGTGAACAcagcagGCGAGACACTCCTCCACAGAGCCTGCAAGAGGAACCAGGTTGAGACGCTGCTTCAGATCCTAGCACTTCCTGGGACCGACGTCAACGTGAAAGACCACGCAGGCTGGACGCCCCTGCACGAGGCGTGTAACCATGGCAGCCGTGCGTGTGTGGAGGCCCTGCTGCGCCACCGGCCCACCCCTCACCTGTACAGCCAGGTTGGTGGAGTCAGCCCCCTACATGATTCGCTGCTCAGTGGACACACGGACATCGCCATGATGCTCCTGCAGCATGCAGGTCAGTCAGCGCGCATGGCTCTGAGCTGCTGCAGCAGAGGGATGGCCGTGGCCGGACAGCGCTGGACCTGGCCTCCACCGTCACGCTGAGGGAGGAGCTTCAACGCAGCGCCCTTGCCGGAGACGCGGTCCTGGAGGCcctggggtcagaggtcagagacctaCCCTTCCTGGAGGCCTGCTCCTGCCTGCTGACTTGCCTGCTTCTCACCTACCAGATAG
>XM_021620907.2
ccccccctcccactagCGCAGTTTACTGTCAAGATAGAGTATTTTCTTCTTAGCACAAGGGTGGAAAACACCTATATTTTGCTCAGTGATAGTCCAATATGTAGCTAGTTTATTAACCAGTATGCACGATTTAATTGTAGTTTCGATAAATATAGCAACATGTTGTTGAACGAATCAAATGTCAGTCTAGAGAAATAAAATATTGACGGCTCGCGAAATGGTATCGACTGTCAAGTCTGGTCATGGCGTCTGAATTTTGGCGCTAGCTAGATAGCGTTAGAGTGGACGTCACATGCACATGCCAAGGATGGTGGACACCAAGCATGTGTTCCAAGTGTCTGGGATCAAGAATCTCCAGAAGAAGGGAAAGTTGCTCCATGGAATCGTTCAACTGGGTGGAAAGTACATTGGTGGCTCTGTTTATAAAGACGGAACTACCCATCTGATTGTCACCCGTGAGCTGCCGAGTGAGAAGTTCATGGCAGCCTGTGCAGGAGgCAAATGGATCGTGACTCCAGAATATATTTTTGACTCTGTTAAGAATGGTTCGTGGCTGCCAGAGGGGCCCTATGAGTTGGACATTGTCTCCAAGGGGGGAGTCCCTGGGACCTCTAACCCAGTAAAggtgtggagggagagggtgacCAGCAGGGCCATGGCTGGGGCCTTCGAGGGTTGGAGGGTCCTCCTGATGGTCAATGAGCCTACTCGCAGAGACATGCTCAGAAGaATCCTAAAAGCTGGGAAGGCCAATGTGTACTcgtaccctcctccctcccatgcTGACGTGACACACGTGTTGACAAAACACGTCACAGAGCATGTGAAGGCCCACAATGCACCGTGCTACTCCATAGAACACATGGCCCTGCATCTTTTTGGGGAGAACGTGTGTTCTGATATGGGTTTAACCTGGACAGAGGGCCAGCCAGAGGAGACACAGGAGGCCAATGATGCACTCTCCACAGACTTTTCAGAGCTGGAGAGCGAGGCCAGGGACTACATCTCTCAAATAGGGGAGCGGAAAAGACTCCCAGATATCCAGAGCTACTATGCCCCCGGACCGTACGCTCAGACTGCTGTAGCCAACTTCAGCAACGTGCAGAGCCTCACTGAGTGTGGTTTATTCACCCAAGCCCTAGAGGAGCTCCAGTTGTACCTGCTGCCAGGGCAGCTCCCCCCAGCTCCATTCCTCCAGCCCCTCATGCGTCACGCTCTCCACGGGGATGCCAAGCCTTTCTTTCTCAGCGAGTTCCGCACGGTTCTCCACAGCATCCTGAGGAACAACCCTCCCTGGGGTTCTCCAGCTAGCGGGACATTCTTCATGAAGGTGCTACAGTGTCCCCAGTGTCGAAAAGGAGTCTGGCCCCTTTTGGAGACATCACTCAGGTTCTGCATGGGTAGCAAGCCCTGTCACTCACTCCCTAGCCCCGCCTCCCCAGAGCTGCTCCGCTTCCATGGTGACCTGCAGGCCTTTATGCTCGAGCTCTTCAAGTGTGACATGTACTCAGCTAGCAAAGGAGAGGCGGGAGGCTTGCGGTCGTCCGTCCTCTACAGGGTGTTCTGGAGCTTGTGGGAGCGCTCGACGCTGGCCTCCAAGGCCGTGCAGCAGATCGCCCAGCTCCTGGTCCAGGCCTCATTGTGGGAACGCTCTGTCTCGGAGGGTCAGGAGAGGGACTGTGAGAGAGACCGGAGGCAGACGCTGGTACTGACCCTGCAGGACACGCTGGGTGTGGTGGTGGACTACTGGTGGCAGGAGTACAGCCGCCTCAACCGCAGCCTGGTGGACAAAGGCCTGGAGGACCTGGCTCAACACATCGCCATCCTCTGTCAGGACCTGCCCCCGGATGTCCTCCAGACGTTTGTTCCCGGGATGGTCCCAACCAGGCTACGGATGGTCACGGCAGACGCCATCTTTAGGAACGTGTGCTGCAGGAACGGCATCATCATAGGAGCAGAGCCCATCTCGCTAAGGAAGATTGTGTCCTCCTACCTGCCAGCCCTGGGGAGGCTGTGCGCGGTCAGGACAGGTGGCTCCAGAGTCTCCCGGGCAGACAGCGGGGGCCCTCGGCCTGGGACTGAACCCACCTCCTGCAGCTGGAGCACCCAGGGGACTGATACAGGAATGGCCAGCAGTCTGGTTAACGGAGCAGGTCTGGGCAAGGAGAACATCCCCAGAGGTCTCAACCGTGTGAACAcagcagGCGAGACACTCCTCCACAGAGCCTGCAAGAGGAACCAGGTTGAGACGCTGCTTCAGATCCTAGCACTTCCTGGGACCGACGTCAACGTGAAAGACCACGCAGGCTGGACGCCCCTGCACGAGGCGTGTAACCATGGCAGCCGTGCGTGTGTGGAGGCCCTGCTGCGCCACCGGCCCACCCCTCACCTGTACAGCCAGGTTGGTGGAGTCAGCCCCCTACATGATTCGCTGCTCAGTGGACACACGGACATCGCCATGATGCTCCTGCAGCATGCAGGCTCTGAGCTGCTGCAGCAGAGGGATGGCCGTGGCCGGACAGCGCTGGACCTGGCCTCCACCGTCACGCTGAGGGAGGAGCTTCAACGCAGCGCCCTTGCCGGAGACGCGGTCCTGGAGGCcctggggtcagaggtcagagacctaCCCTTCCTGGAGGCCTGCTCCTGCCTGCTGACTTGCCTGCTTCTCACCTACCAGATAGAGAGGgctgtccccttccctccctccttctcatccTCCCAGGCCCAGGACAGGCCACTCTCCCTGGGGGTGAAGCTGGCCAGAGCCCTGGAGAGCCACTCTGCCCGGAGGCTGACGGCGGGCTGGGGTGACCCACGGCTGGTGCGCCTGGCTGAGGACATGGAGACCGCGTTGGGGGTGGAGGAATGCCTGGCTCAGTTGTGCCCCGCTATCAGGGATTGCCAGGGCCCACACACACGCCTCCTCATCACCCTGCTGGAGGAGATGAAGGCCCACAGAGCAGCGctgccctctcacacacacactgtgacacacacacctgactgatAATGGACATTGACTGCGGCCGTTATTCAATCCAAAGCACGTTATAGAGCAGAGCACTATAACAGACTTTTAAAGGTGTTTTATGCTTTAGCCAACATGGACAACGTTTCCTGTGAATGTGATCTCCACTGTCTAGGTTCCTGCTCTATACCGCACCTTTTGAGTGAATTGTGACGTGCATAAATGATTGTTGTTTACATTTGAATTCACGTTAATCATGTGACACACTACCACTGTTAGTCTTTTTTTTCAATTGTTCATATACATTTTCATGTTAACACTGTTTTTATAGATtttgaataaatatattttgtattgagAA
>XM_036935492.1
CTAGTACCTACTAGATAACTAGCCAGTCTTACTGACATATCCAGGGATTTAATGAAAGCGCAATATGAACTTCCCCTCGGGCGTTCTATTGGTTTCTACATCATGCTGAAATTCCATTGACGTCCTccgctagttagctaacgttaactggctAGGTATCTGCAGTTCAGATACCCACTGAAAACGTCTGTTGCAAAAGATGGTGGACACCAAGCATGTGTTCCAAGTGTCTGGGATCAAGAATCTCCAGAAGAAGGGAAAGTTGCTCCATGGAATCGTTCAACTGGGTGGAAAGTACATTGGTGGCTCTGTTTATAAAGACGGAACTACCCATCTGATTGTCACCCGTGAGCTGCCGAGTGAGAAGTTCATGGCAGCCTGTGCAGGAGgCAAATGGATCGTGACTCCAGAATATATTTTTGACTCTGTTAAGAATGGTTCGTGGCTGCCAGAGGGGCCCTATGAGTTGGACATTGTCTCCAAGGGGGGAGTCCCTGGGACCTCTAACCCAGTAAAggtgtggagggagagggtgacCAGCAGGGCCATGGCTGGGGCCTTCGAGGGTTGGAGGGTCCTCCTGATGGTCAATGAGCCTACTCGCAGAGACATGCTCAGAAGaATCCTAAAAGCTGGGAAGGCCAATGTGTACTcgtaccctcctccctcccatgcTGACGTGACACACGTGTTGACAAAACACGTCACAGAGCATGTGAAGGCCCACAATGCACCGTGCTACTCCATAGAACACATGGCCCTGCATCTTTTTGGGGAGAACGTGTGTTCTGATATGGGTTTAACCTGGACAGAGGGCCAGCCAGAGGAGACACAGGAGGCCAATGATGCACTCTCCACAGACTTTTCAGAGCTGGAGAGCGAGGCCAGGGACTACATCTCTCAAATAGGGGAGCGGAAAAGACTCCCAGATATCCAGAGCTACTATGCCCCCGGACCGTACGCTCAGACTGCTGTAGCCAACTTCAGCAACGTGCAGAGCCTCACTGAGTGTGGTTTATTCACCCAAGCCCTAGAGGAGCTCCAGTTGTACCTGCTGCCAGGGCAGCTCCCCCCAGCTCCATTCCTCCAGCCCCTCATGCGTCACGCTCTCCACGGGGATGCCAAGCCTTTCTTTCTCAGCGAGTTCCGCACGGTTCTCCACAGCATCCTGAGGAACAACCCTCCCTGGGGTTCTCCAGCTAGCGGGACATTCTTCATGAAGGTGCTACAGTGTCCCCAGTGTCGAAAAGGAGTCTGGCCCCTTTTGGAGACATCACTCAGGTTCTGCATGGGTAGCAAGCCCTGTCACTCACTCCCTAGCCCCGCCTCCCCAGAGCTGCTCCGCTTCCATGGTGACCTGCAGGCCTTTATGCTCGAGCTCTTCAAGTGTGACATGTACTCAGCTAGCAAAGGAGAGGCGGGAGGCTTGCGGTCGTCCGTCCTCTACAGGGTGTTCTGGAGCTTGTGGGAGCGCTCGACGCTGGCCTCCAAGGCCGTGCAGCAGATCGCCCAGCTCCTGGTCCAGGCCTCATTGTGGGAACGCTCTGTCTCGGAGGGTCAGGAGAGGGACTGTGAGAGAGACCGGAGGCAGACGCTGGTACTGACCCTGCAGGACACGCTGGGTGTGGTGGTGGACTACTGGTGGCAGGAGTACAGCCGCCTCAACCGCAGCCTGGTGGACAAAGGCCTGGAGGACCTGGCTCAACACATCGCCATCCTCTGTCAGGACCTGCCCCCGGATGTCCTCCAGACGTTTGTTCCCGGGATGGTCCCAACCAGGCTACGGATGGTCACGGCAGACGCCATCTTTAGGAACGTGTGCTGCAGGAACGGCATCATCATAGGAGCAGAGCCCATCTCGCTAAGGAAGATTGTGTCCTCCTACCTGCCAGCCCTGGGGAGGCTGTGCGCGGTCAGGACAGGTGGCTCCAGAGTCTCCCGGGCAGACAGCGGGGGCCCTCGGCCTGGGACTGAACCCACCTCCTGCAGCTGGAGCACCCAGGGGACTGATACAGGAATGGCCAGCAGTCTGGTTAACGGAGCAGGTCTGGGCAAGGAGAACATCCCCAGAGGTCTCAACCGTGTGAACAcagcagGCGAGACACTCCTCCACAGAGCCTGCAAGAGGAACCAGGTTGAGACGCTGCTTCAGATCCTAGCACTTCCTGGGACCGACGTCAACGTGAAAGACCACGCAGGCTGGACGCCCCTGCACGAGGCGTGTAACCATGGCAGCCGTGCGTGTGTGGAGGCCCTGCTGCGCCACCGGCCCACCCCTCACCTGTACAGCCAGGTTGGTGGAGTCAGCCCCCTACATGATTCGCTGCTCAGTGGACACACGGACATCGCCATGATGCTCCTGCAGCATGCAGGCTCTGAGCTGCTGCAGCAGAGGGATGGCCGTGGCCGGACAGCGCTGGACCTGGCCTCCACCGTCACGCTGAGGGAGGAGCTTCAACGCAGCGCCCTTGCCGGAGACGCGGTCCTGGAGGCcctggggtcagaggtcagagacctaCCCTTCCTGGAGGCCTGCTCCTGCCTGCTGACTTGCCTGCTTCTCACCTACCAGATAGAGAGGgctgtccccttccctccctccttctcatccTCCCAGGCCCAGGACAGGCCACTCTCCCTGGGGGTGAAGCTGGCCAGAGCCCTGGAGAGCCACTCTGCCCGGAGGCTGACGGCGGGCTGGGGTGACCCACGGCTGGTGCGCCTGGCTGAGGACATGGAGACCGCGTTGGGGGTGGAGGAATGCCTGGCTCAGTTGTGCCCCGCTATCAGGGATTGCCAGGGCCCACACACACGCCTCCTCATCACCCTGCTGGAGGAGATGAAGGCCCACAGAGCAGCGctgccctctcacacacacactgtgacacacacacctgactgatAATGGACATTGACTGCGGCCGTTATTCAATCCAAAGCACGTTATAGAGCAGAGCACTATAACAGACTTTTAAAGGTGTTTTATGCTTTAGCCAACATGGACAACGTTTCCTGTGAATGTGATCTCCACTGTCTAGGTTCCTGCTCTATACCGCACCTTTTGAGTGAATTGTGACGTGCATAAATGATTGTTGTTTACATTTGAATTCACGTTAATCATGTGACACACTACCACTGTTAGTCTTTTTTTTCAATTGTTCATATACATTTTCATGTTAACACTGTTTTTATAGATtttgaataaatatattttgtattgagAA

Function


symbol description
slf1 Predicted to act upstream of or within positive regulation of double-strand break repair. Orthologous to human SLF1 (SMC5-SMC6 complex localization factor 1).

NR:

description
SMC5-SMC6 complex localization factor protein 1 isoform X1

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021620908.2 False 2702 mRNA 0.57 18 42592008 42629083
XM_021620907.2 False 3332 mRNA 0.56 18 42592009 42629731
XM_036935492.1 True 3224 mRNA 0.56 18 42592363 42629731

Neighbor


gene id symbol gene type direction distance location
LOC110535709 LOC106580150 coding upstream 434982 42146000 ~ 42157026 (+)
LOC118937354 NA coding upstream 831155 41715130 ~ 41760853 (+)
LOC118937445 NA coding upstream 892758 41669796 ~ 41699250 (+)
LOC118937352 NA coding upstream 959967 41626277 ~ 41632041 (+)
LOC110535708 LOC106580153 coding upstream 987293 41595536 ~ 41604715 (+)
fam81b fam81b coding downstream 209817 42839548 ~ 42861443 (+)
LOC110535025 LOC106580143 coding downstream 527901 43157632 ~ 43208004 (+)
LOC110535720 NA coding downstream 1400807 44030538 ~ 44054846 (+)
LOC110535722 LOC106580138 coding downstream 1489750 44119481 ~ 44178070 (+)
LOC110535730 LOC106580238 coding downstream 2224771 44854502 ~ 44865316 (+)
G979987 NA non-coding upstream 22654 42569102 ~ 42569354 (+)
G979985 NA non-coding upstream 25546 42566245 ~ 42566462 (+)
G979984 NA non-coding upstream 25766 42565817 ~ 42566242 (+)
G979707 NA non-coding upstream 467593 42123583 ~ 42124415 (+)
G979706 NA non-coding upstream 469316 42122493 ~ 42122692 (+)
G980019 NA non-coding downstream 4425 42631824 ~ 42636709 (+)
G980072 NA non-coding downstream 73837 42703568 ~ 42703849 (+)
G980171 NA non-coding downstream 236404 42866135 ~ 42866460 (+)
G980175 NA non-coding downstream 241066 42870797 ~ 42871073 (+)
G980191 NA non-coding downstream 258557 42888288 ~ 42888488 (+)
G979965 NA other upstream 58700 42528520 ~ 42533308 (+)
G979689 NA other upstream 513153 42078492 ~ 42078855 (+)
G978396 NA other upstream 1575920 41003076 ~ 41016088 (+)
G978255 NA other upstream 1823779 40767836 ~ 40768229 (+)
G976017 NA other upstream 3533997 39057676 ~ 39058011 (+)
G981690 NA other downstream 1030643 43660374 ~ 43715297 (+)
G982236 LOC106580137 other downstream 1651194 44280925 ~ 44285969 (+)
LOC110535735 fibcd1 other downstream 2753676 45189846 ~ 45413082 (+)
G984422 pesc other downstream 3478189 46107920 ~ 46109940 (+)

Expression



Co-expression Network