LOC118937355 (LOC106580271)


Basic Information

Item Value
gene id LOC118937355
gene name LOC106580271
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 42923174 ~ 42925634 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935503.1
CGCCATtgtcaaacatacatacatacattcattcACGTGCATTTTTTTGAAATACGATTGCCATGGAGAATATTGATGAAGTTTCAGCAGTACCAAGAGAGCTTGAAGAAGCATTGAAGAACAACAGCTTGACCACAGCTGCAGGCAAGATTCAAGATTATTTGAAGGAGATTAATAATGTGGAGCTGAATATTGCTGTCACAGGAGAGACAGGCTCTGGTAAATCTACCTATGTCAATGCGTTCAGAGGCATGAAGAATAATGAAGAAGGAGCTGCTTTAACTGGTGTGGTGGAAACCACCATGGAGGCAAAGGCTTACCCCCACCCAAAATACCCAAATATGAAAGTTTGGGATCTCCCTGGTATTGGCACCGCTAACTTCAAACCAGAagagtaccttcagaaagttgAATTCGATCGCTTTGATTTCTTCATCATAGTCTCATCAGAGCGATTCAGAGCCAATGACATTACTCTGGCCAAGGAGATCcagaagatgaagaagaggttCTACTTTGTTCGCTCCAAGATAGATAACGACATGAGGGCTGAGGGGAGAAAAGAGAAGTTTGACCAGGATAAGACACTGGAAACAATCAGACAATACTGCATCAAAGGGCTTGAGGATCAGGGTCTGGGCTCTCCTAAGGTCTTTCTCATCTCCAGTTTTGACCTTGGTCACTACGATTTCCATGACCTTGaggagacaatagagaaagagctTCCTGACCACAAGAGGCATGTACTACTGTTGTCCATCCCTAATATAACCCTGAAAATCAACCAGAGGAAGAAGGAGGCTTTAAAAGCCAACATGTGGAGGCTAGCTTTTGGATCTGGCATTGTGGCAGCAATACCTATCCCAGGCCTTTCCTTTGCTGTAGATGTAAGCATCTTGGTAATTGAGATCAAAAAGTACTATAACGCTTTTGGTCTTGATGATGAGTCCCTGCAGAGCCTAGCTAACAGAATGAATGTGCCAGTGGAGGAGCTGAAAGCAGTCCTCAAGTCACCTctgaacaaataaataaacaatgatGTGGTTGTCAAGTTCTCGCAGGGGTAACGGTGGTTGAGTACCTGTTCAGTAACATTCCTATTGTCGGCAGCTTAGCTGCCGCAGGGATTTCCTTTGGTACAACCTACTACATGTTGGGGAAATGTCTGAATGAGCTGGCTGATGATGCACACAATGTTCTAATGAAGGCACTGATGGCCAATGAGTGAGATAATGTTCAAGATTGAATTGCAAGCTAGATCTGTGTATCTCGTTCTTTCTTGAACACTGTCTTCAAACAAGGAAATGCTGATAAGTAGATAATTAAATTATGCCGCTTGAAAATAAATGTTCAAATGTAATTGATCAAAGGAAATGTAAGGTCACAATAGTTTTAATATAGGTTAGCACAATATAACCTTACTGCGTTAGATGGGATATTCATATTGGGATCTACAGCTTTTTACTCATAGTAAATTACTCTGAAAATATATATTCACAGAAAATAGACCTGCTTTTACAATTTAACTTCAGTATAATCTAATCCTAGCCTTTTGAGAACCAAATTGGATGTGCTTTGGAACAATTGCATGATATTTGAACATGACTCCCTCTAGAAAGTGGATTTGAAAAGAATCCTAGTTTAGAATGAACCAGTGTTAATTGTCTATATATAAATTGTGGTTTTACCCAACATTACTCATTCAGTACATATGTTCTACATGAGAACAAATTATTGACCAGTTTCCTGTGTTCTCTTCTGAATCACATTAATCTTTATCTAAAACCGTCACTCTTTACTTTCCCATATTAACTAGTGCAATATTGCAGTTCATGAGCAGACCGCCAGATGGTAGTATTTAGCAGTTTTAGTGTTGGTTATTCAAGGCAGTAGATGGTAATGAAAGgaaaacctagtcagttgtacaactgaaatgtgtcttccgcatttagcccaacccctctgaatcagtagatgtaaactctaAATAAAAACACAAGGTTAAGTAATGCACATGACATATTATAGATCTGTGGACTCTAAATAGAGGGTTTTACAACATGAGCCTTACAAAAATAAATTGCTCATGTACCTGACTGAACGCAGTTTCTGATACAACCATTTAACTGACCACAGATTCACATTGTGTTGAAAACCAGCTACTATAATAGATGGTGCTCATACAGTAGATAAGAGGTTGTTGGTATGGGTTTTATAGGACGTTTCTCTGCTGTCTATGGTTGAGCCATGTGTATAATGTAGTTTTTGATGAATACTCTGACATCATATCAGCGGCGCTTTGGCCTGGATGCAGATTCATTACAGCAGTTAGCGGAACTTAC

Function

NR:

description
interferon-inducible GTPase 5-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function
GO:0016817 hydrolase activity, acting on acid anhydrides molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935503.1 True 2342 mRNA 0.40 2 42923174 42925634
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110535024 NA coding downstream 7067 42909290 ~ 42916107 (-)
LOC110535714 LOC106580145 coding downstream 86597 42631822 ~ 42836577 (-)
kiaa0825 kiaa0825 coding downstream 331392 42425475 ~ 42591782 (-)
LOC110535712 LOC106580148 coding downstream 497859 42179385 ~ 42425315 (-)
LOC110535710 NA coding downstream 773878 42139401 ~ 42149296 (-)
LOC110535716 LOC106580271 coding upstream 12510 42938144 ~ 42958341 (-)
LOC110535717 LOC106580142 coding upstream 301244 43226878 ~ 43242918 (-)
edil3a LOC106580141 coding upstream 457579 43383213 ~ 43630942 (-)
LOC110535721 NA coding upstream 1180828 44106462 ~ 44119167 (-)
ccnh ccnh coding upstream 1249748 44175382 ~ 44183200 (-)
G980738 NA non-coding downstream 14155 42908437 ~ 42909019 (-)
G980740 NA non-coding downstream 29400 42892501 ~ 42893774 (-)
G980780 NA non-coding downstream 45226 42877718 ~ 42877948 (-)
G980769 NA non-coding downstream 56790 42866150 ~ 42866384 (-)
G980767 NA non-coding downstream 58958 42863435 ~ 42864216 (-)
G980844 NA non-coding upstream 63514 42989148 ~ 42989509 (-)
G980904 NA non-coding upstream 144075 43069709 ~ 43070062 (-)
G980954 NA non-coding upstream 180240 43105874 ~ 43106090 (-)
G981468 NA non-coding upstream 445981 43371615 ~ 43371855 (-)
G981680 NA non-coding upstream 729110 43654744 ~ 43655049 (-)
G980514 NA other downstream 359444 42473810 ~ 42563730 (-)
G979041 NA other downstream 1649747 41273089 ~ 41273427 (-)
G975110 NA other downstream 4844647 38077851 ~ 38078527 (-)
G982818 LOC106613263 other upstream 1683775 44609409 ~ 44609942 (-)
G983486 NA other upstream 2173854 45099488 ~ 45100219 (-)
G984166 LOC106580127 other upstream 2680090 45605724 ~ 45606417 (-)
LOC110535758 foxn4 other upstream 3277075 46202709 ~ 46223082 (-)
G985191 fam222a other upstream 3613899 46539533 ~ 46541987 (-)

Expression

LOC118937355(LOC106580271) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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LOC118937355(LOC106580271) Expression in each Bioproject

Bar chart with 20 bars.
LOC118937355(LOC106580271) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network