LOC110535025 (LOC106580143)


Basic Information

Item Value
gene id LOC110535025
gene name LOC106580143
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 43157632 ~ 43208004 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936306.1
ATGGCGAGGCCCGTGAGTGGCTCCCTCTCGGGGAAGGTAGTTTTGCCGTGCCACTTCTccaccatacccactaccatgcCCGCCATCAACGCCAATGGCACCACCCCCAGCACCGACTACCTGCGCATCAAATGGACCAAAATTGAAGGGGAAATGGAATCCACAGTGCTGGTGGCCCAAAATGGCAAGATTAAAATAGGCTCCACCTACAGGAACCGTGTGTCGGTGCCCAGCCACCCAGAGGATGTGGGGGATTCTTCTCTGACCATGGTGAAGCTCCGAGCCAGCGATGCCGGCACCTACCGCTGCGAAGTCATGTACGGCATCGAGGACACGCAGGACACGGTCAACCTCAATGTCAACGGTGTTGTGTTTCACTACCGGGCAAGCACCAGCAGGTACACCATGAACTATGAGAGTGCTGTCCAGGCCTGCCAAACAATAGGAGCCTCCATTGCCACGCCTGACCAGCTGAAATCAGCGTATGAGGACGGCTTTGACCACTGTGATGCAGGTTGGATCGCAGATCTGTCagttagATACCCAATCACTAGACCGAGACCTGGCTGCTATGGAAACCTGCAGGGGAAGCCTGGGGTGAGGACATATGGACCCCGAAAGGCCACAGAGACCTATGATGTGTACTGTTATGTGGACAAGCTGAATGGTGAGGTGTTCTACGCGCCTGTGACCCATAAGATGACGTTTGAGGAGGCAAAGGAGGAGTGTGAGAACAGGAACGCCATCCTGGCGTCGCCGGGTCAGCTCCACTCCGCCTGGAGACAGGGTCTGGACAGGTGTGACTACGGCTGGCTGGCCGACGGCAGCGCTCGCCACCCCGTCGCGGTACCCAGAATGCAGTGCGGCGGCGGTCTGCTGGGCGTCAGGACCATGTATCGCTACAGGAACCAGACTGGCTTCCCAGAACCCATCACCCAGCTGGGAGCATACTGCTTCAAAGGCATCCACTCCTGCACCGAGAACATTTGTCTGAACGGGGGCTCTTGCTACAGAAGCAGACGTTTCCAATCTTGCAGCTGTGCCCCTGGCTACAGTGGGGATCGTTGTGAAACAGACATTGATGAATGTCAATCCAACCCCTGTCGCAATGGAGGTACCTGCATTGACGGCCTGAATTCCTTCACCTGTGTTTGTCTCCCAAGCTATGCTGGATTGTATTGTGATGAAGacactcAAACGTGTGACTACGGCTGGCATAAGTTCCAGGGACACTGCTACAAGTACATCCCCCAGAGGAGGAACTGGGATACAGCGGAGAAGGAGTGTCGGGTACAGGGGGCACACCTCACCAGCATTCTCTCCCATGATGAGCAGCAGTTTGTCAACCGTCTTGGACAGGACTACCAATGGATCGGCCTGAACGATAAGATGTACGATAATGACTTCCGCTGGACCGACAGCATGCCCATGCAATATGAAAACTGGCGCCCCAACCAGCCGGACAGTTTCTTCTCATCTGGAGAGGACTGTGTGGTGATGATCTGGCACGAGGACGGCCAGTGGAACGATGTGCCCTGTAATTATCACCTCACCTTCACCTGCAAGAAAGGCACAGTGGCCTGTAATCAGCCCCCTCTGGTACAGAATGCTCAGACCTTCGGCAGGAAGAGGTCACGCTATGAGATCAATGCTCTGGTGAGGTATCAGTGTAAGGGCGGCTTTATCCAGAGGCATGTGCCAACCATCCGTTGCCGTGGAGATGGCCGATGGGACATCCCCAAAATTGCTTGCATGAGTCCATCAAACTCCCAAAGGGCATTCTCAAGGAGGCACCAGAGCTACAGCCTGTTCAGCAGTAATAACTACAAGTGGCGGTCCGACGAGGCAGAGGCCCGACACCGTCCTCACCATCGAGGAAGGAGATTGAGGAGATCGGTGAACAGGCGAAACAGAAGACAGGGATCGCCGTGGTTAGGCTAGGTTACGCCTGCTCACAATCTGCACAATAGGACTGCATGACTGTCACTCAtgtggagatgttttttttttttacgaatgaaaaaagaaaaatacatttgaacaaaaaaggaacaaaaaaaacaaacccAAAGGAAATGTGAAATTTTCTTACCATTTTGATGATGGAATCTTGGAATGAAGTGCCTTTTCAAAGAATATTCTGATATAGGGACACTAATTTATAACAACGCCAAAGTGGATACCTTCCACTGGCTACTggaaattaaagaaaaataacCTCTCATGAGTGTGCTGGGGAAGAACTTCGAACCAAATAGTGCATTCATTAGACAGTCCTCTATTTTACACAGACTGAAGATTGTTCAACTCTTACATGGTGAAAAAGATACAGGCAAAGATCAGCTTTTGTGAAATTATTGTGCTTGTGTTATACAAAAGAATTCAAAACATTTTCAAATAGTCTGTGCTACGCAGCTCCTAACGCTCAAATGAATCCGCAGTAACCAATACATCTCCCATTAAGGTCCTCTCCATAATCCGGAAATACAATTTCAAAGAAAGAGGATCTATCCTTGGGTTTAACATCAATAGAGCTCCTGTTGTTAAACATGATTACTGTATGTATTTTATGCAGTTTTTCATCCAAGATTTCATCTTTACCAGAGGAACGGAGCAGGCCCTGGGACTATTGGATGGCACACATCACTGACCAATCAGATTTCAGATCACTGAAAGAGAAAAGAAACATGGGGGATGCCGAGCCAATCAATTTAGAGTGCTTGTGAGGTCAGCTTTGAACAAATAACCAGTTCCTTGTCACCAGCTGCAGCCTTCATCTCGTCTCATCCGTGTGTTGTAAAGATaaatatagagttgaagtcggaagtttaaataaaccatatccaaatacatttaaactatgtttttcacaaatcctgacatttcttccttgtctgtaataccaacatgttttaaaagaacaataaggtaacctgcctagaAGACTACTGACACACAGCACTCACGACtgtcaccatgaagtgctttgaatggctggtcatggctcacatcaacaccatcatcccagaaaccctagacccactctaatttgcataccgcccaaacagatccacatatgatgcagtctctatt

Function

NR:

description
versican core protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936306.1 True 3093 mRNA 0.49 12 43157632 43208004

Neighbor

gene id symbol gene type direction distance location
fam81b fam81b coding upstream 296189 42839548 ~ 42861443 (+)
slf1 slf1 coding upstream 527901 42592008 ~ 42629731 (+)
LOC110535709 LOC106580150 coding upstream 1000606 42146000 ~ 42157026 (+)
LOC118937354 NA coding upstream 1396779 41715130 ~ 41760853 (+)
LOC118937445 NA coding upstream 1458382 41669796 ~ 41699250 (+)
LOC110535720 NA coding downstream 822534 44030538 ~ 44054846 (+)
LOC110535722 LOC106580138 coding downstream 911477 44119481 ~ 44178070 (+)
LOC110535730 LOC106580238 coding downstream 1646498 44854502 ~ 44865316 (+)
LOC110536623 NA coding downstream 1681725 44889729 ~ 44895936 (+)
LOC110535026 LOC106580237 coding downstream 1692113 44900117 ~ 44910458 (+)
G980980 NA non-coding upstream 29268 43128118 ~ 43128364 (+)
G980977 NA non-coding upstream 30450 43126500 ~ 43127182 (+)
G980953 NA non-coding upstream 51440 43105869 ~ 43106192 (+)
G980920 NA non-coding upstream 77790 43079566 ~ 43079842 (+)
G980891 NA non-coding upstream 97449 43059849 ~ 43060183 (+)
G981035 LOC106580142 non-coding downstream 21292 43229296 ~ 43234003 (+)
G981657 NA non-coding downstream 434115 43642119 ~ 43642337 (+)
G981802 NA non-coding downstream 543054 43751058 ~ 43751264 (+)
G981882 NA non-coding downstream 619203 43827207 ~ 43827429 (+)
G980019 NA other upstream 520923 42631824 ~ 42636709 (+)
G979965 NA other upstream 624324 42528520 ~ 42533308 (+)
G979689 NA other upstream 1078777 42078492 ~ 42078855 (+)
G978396 NA other upstream 2141544 41003076 ~ 41016088 (+)
G978255 NA other upstream 2389403 40767836 ~ 40768229 (+)
G981690 NA other downstream 452370 43660374 ~ 43715297 (+)
G982236 LOC106580137 other downstream 1072921 44280925 ~ 44285969 (+)
LOC110535735 fibcd1 other downstream 2175403 45189846 ~ 45413082 (+)
G984422 pesc other downstream 2899916 46107920 ~ 46109940 (+)
G985257 NA other downstream 3399388 46607392 ~ 46607681 (+)

Expression


Co-expression Network