XLOC_028392


Basic Information

Item Value
gene id XLOC_028392
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1028836 ~ 1036046 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057980
GACCTTTAAAAGACCTCTATGATTTGCATCATCTCTTCGTATGTGTTGTCCTTGAGGTcctcgatggttggcatcatctcttcacaggtcttggatcacatcacatcaattaaatctaaaatgggatgctgtgtagtttatgaaatgaATACAATCCTGCTAGATTCGACATCACGCTGCTTTGCTTATTGCAATAATCAAGGCAACCTCGTTATATCTGCTGTTCTGTATTATTTAGGAAAAGATTAACAGAAATGTCTTCTTCCAGGAGCCCTGCCCAAGGTGACTGGACCGAAAAGTTTCATATTTAGCATAATATAAGGATATTatgacataaaaaaacacaaaacaaaaacaacataccTGAAACACAGGGAAACAGAATAGATAGTTGATTGACGTCacatattattgtaataatacatTCTATTACATAGTAATGTATGTCTTAAATGTCACAAAGAATGCATCTGTCAAATTTCAGCTCAATTCTTCATAGGTTATTTGTCATGCTGTATGTGCATTTCAATTTTGAGGagatgcaaaaaatgcttttttgtgtgtctctttaaatgcaaatgagctccaCTGCCCCTCCCCCTTTACAGAAGTGGGTGGAGCCTTTACAGCTTGTGCTTTGGTTACTCTGACCAAAACAACTACATTTGTTATACTCAGAAAATCTGGCAAACACAAATTCACATATTGGTTAtgcttccatccaaagatgcaaattagacTGGTataaactggaatattgcataaaacctttgcgaataaagcagacagatgctcaagattATTATCTGGaggtaatgataataatactgaaTATGCTAATAATGAAACTGTGTGCACATATTGAttttattaagcatttattttatgcacttttccaaaatgcacacaaaaataGGTGTACAGAGACAGCCAATGATGATTGTGTGAATGTTCTGTGAAACTCACTAAATGAAGCTGGGAGTGTAAATAAGGGGTTCATTTATAGCATATAAAAGAATTTATGCGAGAACTTTagcagaagtaaaataattggATTTTCAGCAGCTGTTGATGAAATGAAATGCTCTAAAAACCTCACTGAATGAGGGACTTGAGCCACAAAACTTCAGGAGCTCCACTTGAATAACCGCGGGCTTCACTTCATAAACCTGTCTAGATTTTCTTCTTCAGATCCGTCAAGAGCCTGTCTGATGATGGAGCGCCGTCAGACGCATTTCTACAGTTTCAGAGGGTCAAAGCTGCTCATTTGCTTCAGTGATGAGAAACGCAGACTGTCCTTTTGTGACTGAAGGCGCTTTCATATTTCCGGGGGCTCAAGAAGACCTTCGGTAGAGCTCAAACGCCAGAGATAAATTACAGGTCAGAGCCGCCCCGTCTGACAGCCGCGCGCTTCATTAAACGCCACCAGCGGGAGTCTGAGAGACGCCGGCAGCACTGCACACACGCCACAGCTTGTTTTAGTGCTGTGATTCAGGATCAGTAAACTGAGACTGTGGGAAAAACCgcagaccatcatcatcatcatcatcaccacgaGTGACCCAGTGTCTGTCTGTCCTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057980 True 1582 lncRNA 0.40 3 1028836 1036046

Neighbor

gene id symbol gene type direction distance location
XLOC_028391 NA coding downstream 5136 1022316 ~ 1023700 (-)
XLOC_028390 NA coding downstream 12940 1014548 ~ 1015896 (-)
XLOC_028389 NA coding downstream 15741 1010960 ~ 1013095 (-)
XLOC_028388 naga coding downstream 36688 982028 ~ 992148 (-)
XLOC_028387 atp23 coding downstream 63569 958051 ~ 965267 (-)
XLOC_028393 NA coding upstream 18615 1054661 ~ 1259741 (-)
XLOC_028394 NA coding upstream 187118 1223164 ~ 1234236 (-)
XLOC_028395 ptn coding upstream 265390 1301436 ~ 1360495 (-)
XLOC_028396 CABZ01068469.1 coding upstream 352919 1388965 ~ 1403077 (-)
XLOC_028397 zmp:0000000711 coding upstream 433060 1469106 ~ 1497384 (-)
XLOC_028385 NA non-coding downstream 107075 919752 ~ 921761 (-)
XLOC_028383 NA non-coding downstream 124814 899962 ~ 904022 (-)
XLOC_028375 CU855889.2 non-coding downstream 294489 701612 ~ 734347 (-)
XLOC_028406 NA non-coding upstream 812614 1848660 ~ 1855771 (-)
XLOC_028408 NA non-coding upstream 879740 1915786 ~ 1979057 (-)
XLOC_028417 NA non-coding upstream 1356026 2392072 ~ 2440175 (-)

Expression


Co-expression Network