LOC110535026 (LOC106580237)


Basic Information

Item Value
gene id LOC110535026
gene name LOC106580237
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 44900117 ~ 44910458 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936308.1
TTGGAGGAGCAGAAAAAAACCACAAGGCCCAACTGACAGTGTTTCACCTCACATCATCTCTGCTCCAACTAAACACAATTATCTTCAGGTTCAATAGAGGACACATCAGAATCATCATAGACATGTCCCTAGGCTTTGTGGTCATTCTTTATTCACTTTATTTAATGTCCGTGGCAGGGCAGAAATTGGACCAGGAGATATCATGGACTAGGACACAGGGACAGGCTGTCTCCTTCAGCTGCAAAGATACTTACCAGTGTACAACGTTTGTCTACTGGTACCAGAAGAAGGAGGGAGAACCTTTTACCTTGATTCTTGACATCCAAAAGGATAACTGCGCTGTCGATGCAAGTTACAACCATCCTCAAAAAGATGACTTCTCAGCAACAAGTATGAATAACAACTGTGATCTAAAAATCCAGTCTGTTAAAGTCTCCCATTCTGCCACCTACTACTGTGCCTGCTGGAACACTGTGTATGGATTTGTATTTGGCTCTGGCACAAGACTTTATGTGACAGACAACAAGCATGTACAAAAACCCAAAGTGACGGTCTACCCAGCGTCCAACCCTGAGCCGAATGGGAAGACCACCCTGCTATGTCTGGCAAGAGACATGTTTCCAGACTTAGTCAAGATCTCATGGAAGATGGAGGATGAATACAGCAGAACAATGGAGGTGGCCAAAGCAGAGACGGAACAGCTGGAGCAGAGGGAGGAAGGACAGACGACCAGTATGATCATCATTGATAAAGAGAAGATGTACAGGAACAAATACATCTGTTCTGTGGAGCATGAATGGGGCATTCAAGATGTTGACATACCAAGGGATTCCTTCCCCTTCATGTGCAGTCTGAACCTGGCCTCTCTGGTTTATACAGTGATGATAGTAAAGAGCATGGTGTACTGCTGTgggctctctctcctgctgcaccACAGGAACATGGGGAAGTGGACACAACACCTGTAGAAAGGCTACCACCCAGTATGGATAAAGATGTAGTAGGCTGGGAGTAACATGGATTTTACATCCTATTGAGGTCTAACATCTCAATTGTTGGCCTATTGCCTTAATTTTTTTAACTTTATTTTTCAGATGCTAAAATATTGTGAGCCATAGATTTCCATGTCTTCCGATAACTTAAAAGGACAATTATGACATTAATTGCAGAACATTTCATGTAAATTGTGTTTCATTGCTTAAAATAAAAATTAAGCCTAATATTGCATTTTTTTATAACTGT

Function

NR:

description
immunoglobulin lambda-1 light chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936308.1 True 1242 mRNA 0.42 5 44900117 44910458

Neighbor

gene id symbol gene type direction distance location
LOC110536623 NA coding upstream 4181 44889729 ~ 44895936 (+)
LOC110535730 LOC106580238 coding upstream 34801 44854502 ~ 44865316 (+)
LOC110535722 LOC106580138 coding upstream 722047 44119481 ~ 44178070 (+)
LOC110535720 NA coding upstream 867496 44030538 ~ 44054846 (+)
LOC110535025 LOC106580143 coding upstream 1692113 43157632 ~ 43208004 (+)
LOC110535028 LOC106580235 coding downstream 83511 44993969 ~ 45004309 (+)
LOC110535732 LOC100196865 coding downstream 150780 45058392 ~ 45075192 (+)
LOC110535735 fibcd1 coding downstream 279388 45189846 ~ 45413082 (+)
LOC110535029 LOC106585784 coding downstream 526063 45436521 ~ 45447904 (+)
LOC110535736 LOC106580128 coding downstream 538690 45449148 ~ 45484204 (+)
G982978 NA non-coding upstream 83942 44725514 ~ 44816175 (+)
G982954 NA non-coding upstream 193676 44706180 ~ 44706441 (+)
G982931 NA non-coding upstream 206741 44692979 ~ 44693376 (+)
G982909 NA non-coding upstream 220270 44679610 ~ 44679847 (+)
G982858 NA non-coding upstream 249153 44650686 ~ 44650964 (+)
G983276 NA non-coding downstream 52816 44963274 ~ 44963596 (+)
G983286 NA non-coding downstream 58292 44968750 ~ 44968974 (+)
G983391 NA non-coding downstream 135484 45045942 ~ 45046260 (+)
G983435 NA non-coding downstream 170746 45081204 ~ 45081443 (+)
G982236 LOC106580137 other upstream 614148 44280925 ~ 44285969 (+)
G981690 NA other upstream 1184820 43660374 ~ 43715297 (+)
G980019 NA other upstream 2263408 42631824 ~ 42636709 (+)
G979965 NA other upstream 2366809 42528520 ~ 42533308 (+)
G979689 NA other upstream 2821262 42078492 ~ 42078855 (+)
G984422 pesc other downstream 1197462 46107920 ~ 46109940 (+)
G985257 NA other downstream 1696934 46607392 ~ 46607681 (+)
G985387 LOC106586052 other downstream 1937245 46847703 ~ 46875441 (+)
G985401 NA other downstream 2012481 46922939 ~ 46923827 (+)

Expression


Co-expression Network