LOC110535028 (LOC106580235)


Basic Information

Item Value
gene id LOC110535028
gene name LOC106580235
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 44993969 ~ 45004309 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936310.1
ATGGCGACAGAGAGTCCAACGGAGGCAGGGAAGTGGGAAAATGGCAGCGCAGTAGGAGGCGAATTACAAGTGGATCGGGAATTCAATGAGACCTTTGGGAAGAAGGGCTTACATTTTGTGCACTTAAAATCCGAAGCCTACTACCGAAGATCAATGAGATACGCCTGTTGGTTTGCAAATCAGAGGCTCGAATTTGGCTCTGGCACGACACTTTATGTGACAGATGGCATTCAACGAAAACCCAAAGTGACGCTGTACTCAGCGTCCAACTCTGAGTCGAATGGGAAGACCACCCTGCTATGTCTGGCTAGAGACATGTTTCCAGACTTGGTCAAGATCTCATGGAAGATGGAGGATGCAAACGGCGGAAGAACGGAGGTGCCCAAAGCAGAGGGGGAACAGCTGGAGCAGAGGGAGGAAGAACAGACGACCAGTATGATCATCATTGATAAAGACAATACGTACAGGAACAAATACATCTGTTCTGTGGAGCATGAATGGGGTGCTCAACATTTAGTCATCCCAAAAGAtactccaaccaccatgtctGCACCAGCGTTCAGAAATGACACCCAGGAGTCACTGACTCTGCAGTTTACCGAAGATTCCTTCCAGTCAACGTGCAGTCTGAACCTGGCCTCTGTGGTTTACACAGTGATGATAGTGAAAAGCATGGTGTATTGCTGTgggctctctctcctgctgcacaACAGGATCCTGGGAAGAGGACCCAGCACCCGAAGACCTCTATGAGGAAAATCATTTATGTGCTTTTTTACATTGatacaatgttgttgtttttttttttgtttttttttacattgatacAGCTTGCATGACATTTTCCTTGCCTAACACAGCCTGCTCAAATTAACTAAGTTGCTCAAAATAACCATATTATTTCAGATGAGGATGCCTTTGTGAACAAAATGTTGCAGCAACAATGGTTCTGTAAATGattgtaaaaatacatttttacagttcCGTGCTGTTTTCAATGAATAAAGGTTACTTAAAACCCCCAAAATATTGCATCTCTTTACTATAAGATCATCTATTCATATTTGGGAAAATGTTATTTAATTGAATCTCATCAGAAGTGGAACAATAAGATTGTAAGTTCACCAATGATCTGTTTTTGTTTGCTTCAATGTGCATGTTCCCGACGCAGATGTTGAGCCTAGACTTAATAGTGGTGGGATAATATGGTTAATGTTTCTTTGGTGTTCTAAGGACATGTGAAACGGTAGTTACTGGAAACAAGATATAGCTAGCTGCAGAACCACAGCTCGAGTGTGTGAAGAGATGATTATCCAAAGCTGCTGGATGATTCACTTGGCCTTGATCTGTTTTTACCTCTAGTTGTGGGTTCACAGCTCTTGCCACCAAAATGAAGAATATGACAGCGATGGCAGACGAGTCCGTAATGGTAGTTTATGGTTCTTGCATTTGTAGAATTATAGATCTATGGCAAAACAAACTTTTTACACTTTTGTTTATGTGTACGTTTTACCATGaaacaatcaaattaaattaaatcaagGTTGGAGAGTTTAATTTGTTTTTACATGTATATTTTGCAAGGAAATTAACATTGTTATCAAGAGAAGTATTTtccatgttattgtcatgttatTACCATTTATTCTGTGCTTCAATGTAAAGTGCTACCGAAATGTCTTTTTAATTGTTTTCTTTTCTCTACATcgaaaccatgaaataacacatatggaatcatgtagtaaccaaaaaagtgttaaataaatatatttgagatttgag

Function

NR:

description
TCR gamma alternate reading frame protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936310.1 True 1782 mRNA 0.40 5 44993969 45004309

Neighbor

gene id symbol gene type direction distance location
LOC110535026 LOC106580237 coding upstream 83511 44900117 ~ 44910458 (+)
LOC110536623 NA coding upstream 98033 44889729 ~ 44895936 (+)
LOC110535730 LOC106580238 coding upstream 128653 44854502 ~ 44865316 (+)
LOC110535722 LOC106580138 coding upstream 815899 44119481 ~ 44178070 (+)
LOC110535720 NA coding upstream 961348 44030538 ~ 44054846 (+)
LOC110535732 LOC100196865 coding downstream 56929 45058392 ~ 45075192 (+)
LOC110535735 fibcd1 coding downstream 185537 45189846 ~ 45413082 (+)
LOC110535029 LOC106585784 coding downstream 432212 45436521 ~ 45447904 (+)
LOC110535736 LOC106580128 coding downstream 444839 45449148 ~ 45484204 (+)
LOC118937447 NA coding downstream 482832 45487141 ~ 45491870 (+)
G983286 NA non-coding upstream 24995 44968750 ~ 44968974 (+)
G983276 NA non-coding upstream 30373 44963274 ~ 44963596 (+)
G982978 NA non-coding upstream 177794 44725514 ~ 44816175 (+)
G982954 NA non-coding upstream 287528 44706180 ~ 44706441 (+)
G982931 NA non-coding upstream 300593 44692979 ~ 44693376 (+)
G983391 NA non-coding downstream 41633 45045942 ~ 45046260 (+)
G983435 NA non-coding downstream 76895 45081204 ~ 45081443 (+)
G983446 NA non-coding downstream 84441 45088750 ~ 45089596 (+)
G983454 NA non-coding downstream 87233 45091542 ~ 45091867 (+)
G982236 LOC106580137 other upstream 708000 44280925 ~ 44285969 (+)
G981690 NA other upstream 1278672 43660374 ~ 43715297 (+)
G980019 NA other upstream 2357260 42631824 ~ 42636709 (+)
G979965 NA other upstream 2460661 42528520 ~ 42533308 (+)
G979689 NA other upstream 2915114 42078492 ~ 42078855 (+)
G984422 pesc other downstream 1103611 46107920 ~ 46109940 (+)
G985257 NA other downstream 1603083 46607392 ~ 46607681 (+)
G985387 LOC106586052 other downstream 1843394 46847703 ~ 46875441 (+)
G985401 NA other downstream 1918630 46922939 ~ 46923827 (+)

Expression


Co-expression Network