LOC110535029 (LOC106585784)


Basic Information

Item Value
gene id LOC110535029
gene name LOC106585784
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 45436521 ~ 45447904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110535029
CATGATCCGAGCTCAGAGAGTGAAACAAGCATACTGACATCAGACaatTTATTCAGTGATGCTTCCATCAATGAGGAGATCTTGGAGTTGAAAATGTATTGTGCCAACCAAGGGTGCTCCTGGAGGAGTATTCTCAAGGACTTTGAGGAGCACCAGGAGCAGTGTGAGTGTGCCCTGATCCCCTGCAACATTGGCTGTGGTCACATGGTGCTGCAAAAGGCCTTGGCCTGTCACCTGGAGAAGGCCTGTCCAAACAACATGTCAGTGTTCCCCACATGCTGCCGCTCTATGTGCCCCTCAGAGCTACAGCGCAGCTCAAGCAGCAGTGTCTCCAATGTTTACTGCTGCCCCATATTCCCTTTCACCACTGATCTGGGAAGGGCAGGGGGCTGCCGAGAGCTTTGGACCACAGCGAAAGGGAGCAGAAAGCCACAGAACTTTAGACTCGAGAAAGTTCCAAAATGCAAGACTCTTTGTGTTTTCTCTGAAATTCGTTGCCCATTTAAGGGGACCGTAGAGAAGGTGAGAGGCCATGAGACCAGCAGCCACGTCAGCCACCTTCAGCTCCTGCTGCGTGCCACCACCACCAACAGCAGTGACCTGCAGTTCGCCCCACAGGTAGCCCAGTTCTCCTTGCCTGGTGCAGCAGCTATGGTTGAGCCGCTgccccagctcagagaggctTTGCGGATGGAAGGGACAGATGGGATAGCTCAGCAGCTGAACAGTCTGTGAAATGATGACCAGGTGACCATCCTCATGGACATAAGGCTGCAGATAGACACACTGCAGCAGAGGGTCCAGATATCGGAGAACATCATCTCTGTCCTCAACAGGGAGGTAGGTGGAAAAGACCCAGCTGAGAGTGGAGGCTTTGGAGAGGGAGAACCAGAGCAGCCAGAACATGATTCACCAATTAGAAATAAAGGTGACAGAGCAGCAGCACAGACTGGCCAGGAAAGATCTTGTCATCAGCTCCCTGATAGAAAGCCTCTGTGCCCACCAGGAGGTCTCCTATGACGGTAATTTCATCTGAAGGCTGTCTGACCTTAGCTACAAAATGAAGGAGGCCATCTCTGGCCATTGGAATAGGCCTAACCTGTACTCTCCTGCATTCTACACATCCAGGTACGGATTCAAGGTGCGCATGAGGCTGTATCTGAATGGTGACGGGGTGGGAAAAGGCACTCATATCTCTCTGGCCATTCAAGCACTCTCTATAATACCTGTGTAA

Function

NR:

description
TNF receptor-associated factor 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110535029 True 1234 mRNA 0.52 9 45436521 45447904

Neighbor

gene id symbol gene type direction distance location
LOC110535735 fibcd1 coding upstream 23468 45189846 ~ 45413082 (+)
LOC110535732 LOC100196865 coding upstream 362858 45058392 ~ 45075192 (+)
LOC110535028 LOC106580235 coding upstream 432212 44993969 ~ 45004309 (+)
LOC110535026 LOC106580237 coding upstream 526063 44900117 ~ 44910458 (+)
LOC110536623 NA coding upstream 540585 44889729 ~ 44895936 (+)
LOC110535736 LOC106580128 coding downstream 1244 45449148 ~ 45484204 (+)
LOC118937447 NA coding downstream 39237 45487141 ~ 45491870 (+)
LOC110535737 LOC106580127 coding downstream 54948 45502852 ~ 45614960 (+)
LOC110535739 med27 coding downstream 239037 45686941 ~ 45787303 (+)
LOC110535740 rapgef1 coding downstream 372531 45820435 ~ 45866751 (+)
G983865 NA non-coding upstream 19300 45416850 ~ 45417221 (+)
G983544 NA non-coding upstream 264582 45171736 ~ 45171939 (+)
G983526 NA non-coding upstream 281961 45154334 ~ 45154560 (+)
G983525 NA non-coding upstream 282253 45154019 ~ 45154268 (+)
G983512 NA non-coding upstream 293485 45142732 ~ 45143036 (+)
G983953 NA non-coding downstream 84404 45532308 ~ 45532726 (+)
G983969 NA non-coding downstream 104118 45552022 ~ 45552311 (+)
G983975 NA non-coding downstream 109967 45557871 ~ 45558091 (+)
G983981 NA non-coding downstream 118650 45566554 ~ 45566840 (+)
G983984 NA non-coding downstream 121558 45569462 ~ 45569721 (+)
G982236 LOC106580137 other upstream 1150552 44280925 ~ 44285969 (+)
G981690 NA other upstream 1721224 43660374 ~ 43715297 (+)
G980019 NA other upstream 2799812 42631824 ~ 42636709 (+)
G979965 NA other upstream 2903213 42528520 ~ 42533308 (+)
G984422 pesc other downstream 660016 46107920 ~ 46109940 (+)
G985257 NA other downstream 1159488 46607392 ~ 46607681 (+)
G985387 LOC106586052 other downstream 1399799 46847703 ~ 46875441 (+)
G985401 NA other downstream 1475035 46922939 ~ 46923827 (+)
G985597 NA other downstream 1803408 47251312 ~ 47252236 (+)

Expression


Co-expression Network