LOC110535744 (LOC106580121)


Basic Information

Item Value
gene id LOC110535744
gene name LOC106580121
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 45923474 ~ 45942406 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620970.2
GGGAAATATGTTAATATTCCAGCAGTGTCGTTTGTAGCACGTAGAGATCTTAAATGAAATAGGATGTCAGACAATTTCATTGGGACTTAGCAAGTTAAATATATTTGTTTCTACATAATATTTTTATGTATAACATAAGAAGACATATCTGTTAACTTGGATGACAGTCTTGgtgTCTCATCCATTATGTCCTCGGATGAACTTCTTGCACAGAGGGAGAAAGTCGAACGCCAGATTTTGGTGCTCGAGCGCACCCTTGGTCCCGAAAGCAACTCCATTGAACTATCTTCAGACAGTTGTTCATCTGATGATGGATCAGACGATAATGCATCTCAACCAGAAGATTTGGGTCCTCCGGGGGACCTGGAGGCAGAGCGGGAGCaaatacagagagagattgaagagTTGGAGTGCACTCTTGGCCCAAATGCATCTAATGCTGAGATTCTGTCAGATGAGGATGTCCAAGGAAGTGAAACAGAATCGAGCAAAGAGGACAGTGCTGAGGAGCTGGATCTACCCCAGAACACAGATACATGTCTGCAAATGAACCTTGTTTACCAGGAAGTGTTGAAAGAGAAATTAGAGGAGCTGGAGCGACTGTTATCAGACAATCAACACCAACAAAAAGAGATTATGACTCAGCTGTCTGCCACAGGATCTCCCCAGGCTACCACATCTGGACAACCCACACTGAAGCTTTTCTTGGGGAGCTTTCTGAAGCCCTATTTCAGAGATAAAGTATCATGTCTGGGCCCACCTGCTAATCCAGAAGCCAGAGAGAAGATGAGTAAAAGGATCGGACCTACTGACGACGTCAAGATGAAAAGATGGGAAGGCTGGCAGAAGACTCTGCTGATAAATGCTGTCATGAAAGACAGTATGAAACGCATGATACAGCCCAAGCTGTCCAAGGTGGAATACCTCACACAGAAAATGGTCAACTCTGAAAATGTGGAAAAGCAAATCCTGCGGAAACAAATCGCTGAAATTGAAAAGGACATTGAGGCCATCAGTGCGCTGAAGGAGGATGAGCTGATGGGTGGCCGCTATGATGACCATGATTGGCAAAAGATTTCCAATATTGATTTTGAAGGCATCCGTGAAGCTGAACCCATAAAAAGCTTTTGGCAGAACTACCTGCATCCCTCCATTAACAAAGCCAGTTGGAAGGAAAACGAAATTGAGATGCTCAAGAAAGTCGCTTTAAAACATGGGCACCACAACTGGGATCTGATTGCTGATAAACTTGGGACCAACAGGACAGCCTTCATGTGTCTCCAGACGTACCAGCGTTACATCTGTACCGACttcaggaggaggaggtggggcggCGTGGAGGACGAGATCCTTCGAGAGCTGGTGGAGAAGATGCGTATCGGGAACTACATCCCGTACACCCAGATCTCCTATTTCATGGAGGGCCGGGATTCATGCCAGCTGATGTATCGGTGGACTCAGGTTCTGGACCCCACCCTCAAAAAAGGCTATTGGTCTAAAGAAGAAGATGAGATGTTACTGAGCGCAGTGGCTAAACACGGGGCAGGGAACTGGTGGAAGATCCGTCAGGATGTGCCTGGCAGAAATGATGGCCAGTGTCGGGACAGGTACTTGGGCGTCCTGGTTGGGAACGTGAAGAAGGGGCCCTTTGACGAGAAGGAAAAGGCACAGCTCAGACGATTGGTGGAGAAATATGGACGTAAATGGTCTAAGATAGCTGCCGAGATTCCCAACAGAATTGACTGCCAGGTCCTTCATCAGTGGAGGAAAATGACCGGGTACAAGcccagagagagggacaaaagtAAAAGAGCATTGCAGCGAAGGAGAAAGATCGCGGCTGTGAGGAGCATCAAGAGTAAGCTGATGAGGCTAGACGATGATGAGCACTCAAGCTCCGACGAGGAGGAGAACGTCGAGATTGAGTTTATGGACAGTGACGACGAGAAGAAACAGAAGTTCTTTGAACCGCACTGGTCTGATCAGGAAAGTGACATTATCAAAGACTACACCCAACCAGACATGGAGCAATGGATCCCCGTGCTAGAGAAGGAGTTTGAAGGGCTGGGGAAGGTGAGGAGCACGATGGTTGAACGGCCCAGCAAGAACACAACGCAAGAGCAGGCAACGACGGACAGCCAGGATGCGGCGCGCAAGGTCACAGTGGTACGTTCCACTATCCTGGACCAATTCGGCAAGCCTGCTGCCACTGTCATCGGACAAAACCCCCCAATCCTAGCAAAGAAGGATTACAACAGTGACCTGGCCATGCTGAAGGTGTGCTACGGAGAGGTGAGAAACCTGATCGCTTGGAAGAAAACCAATGCCAGAAAACACAAAAACAGTGGGCCTATCAGCGGTGACCAGTCCTCAAGACAAAAGGAGTCCTCTGCCAACCGTGAAACCTTCGTCACTCTCAACTATTCCCTTCAATTGGCAGTCACTCCCTGGGTGGGCAATGTGCTTATGCCCCCACCACACTCTTCAAACAAGCGCCGTGAAGCGGACATGGtgcgagagagagcagagagcattGGACTCACCAATAGCCCAGTGTTCTTGTTCTTTCTGCAGGTCCTCAGTTTAGATGCAGAAGGCTGTAAGCAGATCATTAAAATGCGTAACAACCAAGCTGTACACCTGGGAAACAAATCTTGGGAAGCGAAACAGGCTTCATTGAAAAACCCAAAGCAACTCCATGGTCCCAGAACAGTGGCCAGTATGCTAAACCAGAAGGGAAATGAGCAGAAGAGGAAGCAGAACAGTCAACTTGTGATGATGATCCCGCAGACCTTTGTCATTGCACCGAAGGTAGTACAGTCCATCCCACATCCTGCGGTCCCCTCCACTCCAACTTCCAGACAACAACTCATGCCTTCCGCACTTACCCAACTCAGACCCTCTACCCCCAGCCGACCTATACCCTCCACACTTGGTCAACCTGTACTCTCTACCCCCAGCCTACCCATACCCTCCACTCCTGGTCAACTTATAACCTCAACCCCCAACCGACCTATACTCCCTGCTTCCCTTTCCATCCAATCCTCAACTACAATAGACCGGGTGAATGAGGAGGCTAATGAGAATCATTCAGGGAAAAAACGCAATCGTAAACCTACTGCGAAAGCACAAGCCCTCAAGGATGCTGCGATTGCTAAAAAGTCAGTGGAAGAGTCACCCAAACGCAAGAAAGCCCGTACCAAAGAGAGCCTAGTTGTCCAGCCTTCTAACGTGGTTATGTCCCCCCCACAAACTGCCTGGGTCCTGATGCCCATTGGACTTGTGCCAATCAGTGGCATTGGCATCCAGATGACACCTCAGAGTCTACCACGAAATGCTCTTGCACCTGCTTGTCCATCTCCTATTATTATCAACCAGAAAGTCCCTCTAACACTAAATGCTGCTGCAACACAAGCCTCTCCCAATATGACCTATGTCTGCCCATCTCCCTCTACCCCTAAAGACCCATCTGCCCTCATGGTATCTCCTGCCTCATCTGTAGCACAGGGAACTGCCTCCCCATCTGTaaactctctctccacctccattaCCATCACAAGCAACACTGCTCTAAGAATGACCAACCCAGTAAAACGCATGAGAATAACTAACCCAGTCATGCAGGCTGTGGCAACCACTTGTCCTCGGCTCAATGCAGTTTCACCTATTCCCATGAACACGGTCATCTCGGCTCCCATCAGACCGCAGACTGGCCCTCCACAGGCTTTAGTCTTCAACGTCCCTCCAGGCTCCCTTCCAGCCTCATTCCCACAGGGAGCCCTCCGAATCGTGCAGCTTAACCACCCTAAAAGTGTCCCTCCACCCCGCAATCCGGAGCTAATGCAGTTTGATCCCAACCTGATGTTCATGGAGGACCCGGCACAAGTGAGCGAGTGGTTGAGCGGCAAGCGAGGAGTTGCGCTTCCGGATTTGGGCGTCACTCTGCCCTACTTACCCCCTTTTGTCAGCAGTCTTAATACCCTATCGGGTCTCCTGAAATGTAAAAAGACATTGGCAGTTCGTGCAATGCAGCTCCTACCcccagaggagaaagagaaccaGGAAGAACAGCAGCAGGTAGCTGCAGTGCGGAGCTTTGTGGCAGAGCGCTTCAGCCATAACCCAGGCTACCTGCTCCTGAAGGCTCGCTTCTTGTCCTGTTTCACCATGCCTGCTCTTTTAGCTACTATCAATCCGGTGAAACTCTCCAATTCCCCCACCCCGGACCATGGTGATGTGGAGGAGGAACCTTTCAGGAACCGTCCAGTGGAACAGACGGATACTGGGTATGAACAGCCAACAACACTCCAGGCCCCTCTGCTAAGCACAGACGGAAAAGGACCTCCTGCCACCTCCTTCTCTGGAATCACCACAAGAAATAAAAGTCGCTACCTCAACATGGACACAGAGTAAATGGAGTCGTTTTGGAGTGACGTGTGGTCTTACGGGTTAACCAGGTTTTGTGTTTGAAAGTTCTTGCCAATTTTGTGATGTTACTGGAATTGATAGAAGATGGCAGTGGATAGCTGTATTCTATGTCACTCAGTACAGAATAGTTCAGACGAATTTTAAGCTGTCGAATTTGCACTaaaccagtggtcaccaacctgttctgagtcaagatcactttgagtCCAAATGCAAGCCGATCTACCGCTCATATTTTAAATAAACGTGACTTAAGAAATGTAAGCCTACGCAACATTAGCCAGTTAAAAACagatctgtagccatgaagttagtgcagtaggctataggccccaatacattatcactgcatatttgttctgcttgaattgccctggcaatgttcttctcagaccattttgaaaataaataaatatatataaaacacacattTGGTATATaatcacactggtaatagatcatttgtttgtgaggcacagctgagtgagcaaaATTTGCTTTTAtgtttttactggactgatggcctgcatCCGATGGTCAATCTGAGGAGAAGGAGCAGCTCTTGGGGCTTCCTCTCATCCGACTCGCCATCTCTCCGCTCACCTGCCCTctgctgagaaaaggggacacagtcttccagctgatggcaaaAGTCAAGttgcactgcattatttctgcctcgtgCACAAATTAATGTTACTCCTAtaaccagagaaagtgaaatattcctcaataTTAAAGACAAGCAGCTAATAATAACACAAGCTTATCGGAATGCTTTTCTATACTcgttcattgcagctgcagtgctgATTGTGGCGAGATTGGAAGTAGGGGGAATGTGCATTCTATgatggcttataaaagtgttgacagGGCTGAATAACTTGAACATGAACTTATAAAAAGTGCAGCTCTTTGCTGTACTCGTTGagtctctagtcatggtttttaaatctgacagtatcaactttgctgtgagTTCAAGGCTTATTTTTACAGTTTAAGGCACAAGGACACTGCAGACATGGTGGTCTGAGCTATGATTGGTCAGTGGCAGGCCTATCGGTTCACTTGATTTgctctaccttcagacacatgaaattgTTAAAAATGGGAACACAGTCTTCCCTgtgctagggctgctgaatcaagtgcacctactgtcaacagtggggaaaaaaacaaatagCATGGCTTAGTTTTTAACAATCGACCTGTTGGTGACCACTGCACTAAACTAATGGTTCATATTTGTACTTGTTTTTGTTCATAATTGAAATTTTCTTATACATATTGTGAAAAGAGAAAGTTATGTTGACCTGTACATATTTTGTAATAAATCATTCTActtgtttaaaaa

Function

NR:

description
snRNA-activating protein complex subunit 4-like

GO: NA

KEGG:

id description
K09453 SNAPC4; snRNA-activating protein complex subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620970.2 True 5791 mRNA 0.47 25 45923474 45942406
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110535743 card9 coding downstream 1187 45916594 ~ 45922287 (-)
LOC110535738 ntng2 coding downstream 237583 45626719 ~ 45685891 (-)
LOC110536624 NA coding downstream 735098 45186482 ~ 45188376 (-)
LOC110535733 LOC106580130 coding downstream 796212 45102479 ~ 45127262 (-)
LOC118937358 NA coding downstream 825385 45096097 ~ 45098089 (-)
entr1 LOC106580119 coding upstream 10459 45952865 ~ 45957700 (-)
gstt2 LOC106580120 coding upstream 24191 45966597 ~ 45969187 (-)
LOC110535747 LOC106580117 coding upstream 30649 45973055 ~ 45990422 (-)
LOC110535749 LOC106580115 coding upstream 73905 46016311 ~ 46031217 (-)
LOC110535750 LOC105014428 coding upstream 88783 46031189 ~ 46067844 (-)
G984742 NA non-coding downstream 53251 45870010 ~ 45870223 (-)
G984737 NA non-coding downstream 56724 45865112 ~ 45866750 (-)
G984602 NA non-coding downstream 223901 45687016 ~ 45699573 (-)
G984181 NA non-coding downstream 299447 45623339 ~ 45624027 (-)
G984175 NA non-coding downstream 305060 45616392 ~ 45618414 (-)
G984809 NA non-coding upstream 68346 46010752 ~ 46012725 (-)
G984856 NA non-coding upstream 180439 46122845 ~ 46124545 (-)
G984858 NA non-coding upstream 185020 46127426 ~ 46127647 (-)
G984859 LOC106580269 non-coding upstream 185595 46128001 ~ 46133058 (-)
G984893 NA non-coding upstream 251777 46194183 ~ 46194733 (-)
G984166 LOC106580127 other downstream 317057 45605724 ~ 45606417 (-)
G983486 NA other downstream 823255 45099488 ~ 45100219 (-)
G982818 LOC106613263 other downstream 1313532 44609409 ~ 44609942 (-)
LOC110535714 LOC106580145 other downstream 3287412 42631822 ~ 42836577 (-)
kiaa0825 kiaa0825 other downstream 3331706 42425475 ~ 42591782 (-)
LOC110535758 foxn4 other upstream 260303 46202709 ~ 46223082 (-)
G985191 fam222a other upstream 597127 46539533 ~ 46541987 (-)
gltpa gltp other upstream 649950 46592176 ~ 46602166 (-)
G985626 NA other upstream 703922 46646328 ~ 46646949 (-)
G985699 LOC106613263 other upstream 852213 46793282 ~ 46801092 (-)

Expression

LOC110535744(LOC106580121) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
End of interactive chart.

LOC110535744(LOC106580121) Expression in each Bioproject

Bar chart with 21 bars.
LOC110535744(LOC106580121) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Co-expression Network