entr1 (LOC106580119)


Basic Information

Item Value
gene id entr1
gene name LOC106580119
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 45952865 ~ 45957700 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620971.2
ATCGCGGCACGTGTAAAATTTGCCGGGAAATCGGATCGACTCCTGGGAAATGTTGTTTATTTTCCCTAAAACGTCATCTGAATCGTAGCCAGTGAGAAGTTTAGGATTGTCCACGTGATTTTCGGCAGCTAGCAAACCTTTGGCGCATCGACGCACACAGCTGACGAACAACAACCACGTCTAAAATATGTCATTTTCATCAATTATCTTTCGTATGACAAGTAATTTCGTCTACATCCAGTAATTTGCTAGTACATTATTTCATTGTTTTCAGCAAGCTAGCTTGGTAACGTAAACTGTccgtgttagctagctaacaacgcGTTAGCCGCTGAAGTTAGCTGACAACCGCTCATACCATCACCGATTGACTGGTTCACCGTCAACATGGCAAAGCATAAAACCTCTGAAAAAAACAATATAATCGAAGTTGATGAagtcagagaagatggagaggagatgaaTCCTTTCTCCTTCAAAGAGTTCATCCGCAGTAAAAACCAGTACCCAGATATGAAAGGGGATCCAGATGAGAAGAATTACTCAACGCGAAAGAAAGCATATGGGAGCACATTCCTGGCAGAGGGGGAATATACTGCCCCGAAGAGCTTCGATCAAGACTTCCAGGGTCAGTTTTACATGGACCACACACCGTTTCCTCAATTTCTGGAAAATGACACTAAGGAGGAGTGGGCTGGGAGTTACCAGCCATCAGCCATTGAGGAGGCACATGAGTTTGGACTGTGTGGCACTGCAGCAGCAGACAGCAGCACATACTCTGGTCAGTCCTCCCTGTgcacagaggaagaagaggagacttCATCCTCCCTATGGCAGGTGGATGAAGAATTCTCACCAGAGGCCCACCAGTCCAGACGGGCCCCAGTGAATTATGAGGGAGATGACGAGACATCAATGGCAGAGCTCACCTACAAGACCAAGAAGAGTAGTACCGAGAATGGCAATAGGGATCAACAAAAGCTGAGGGAGGAAAATGCGCAGCTCAGGAAGCACATTAAAGATCTTGTGAAAAAGTCTGAGTATGATGATCGAAGAATTCGCCACGTCACAGATGAGTTGCACAAGAGAAGAgtgcaggaggagagggaggctcAGGCTTTAGAGACCATGGTCCACTCCGTCGAGCAGAACCTGCAGTTAATGACCAAACGAGCAGTTAAGGCTGAAAACATTGTATCAAAACTCAAACAGGAGCTGCATCAATTACAGGGCCAAGTAGAGGGGTACCGGTATGAGAATGAGAGACTTCGAGCCGGAGAGACAGCTGCCTTAAATACAATGAAACATAATGCGCAAGTGGCCTCAGAGTACCTCAACAAAGCAGCACTCAATGCAGAGACTTCCATCAAGCAATTACTTACAAGTGCAGAGAGTCTTTGTCTAGTATCGCAACTGCTGCAGTCCATCGACAACCTATCTGAGATTCATAATGAAGGCTGATGGCGTTTAAAGGACACTAGAGATTTCAGATCTAGTACCATCCAGCAACAAGGACCTGGAAAGCAATTATGGTGTGTCACACAACACTCAAACGAGAATTTTAAGTTGTGGTGGGGGCACTGatttgtgaccccccccccccaaaaaaatagtGCACATCTTTTTTTTTACTTGTACATCATAAAATGTTTAGTTTTAAATCACTTTAACAGGTGATTTGAAAACAATATATACTAACAGATGTATTTACCACTGAGTCAAATATGACTCAAATATTGTGATTAATAAACATGTGACTAGATATCCTTCAAA

Function

NR:

description
serologically defined colon cancer antigen 3 homolog

GO: NA

KEGG:

id description
K22938 SDCCAG3, ENTR1; serologically defined colon cancer antigen 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620971.2 True 1773 mRNA 0.44 8 45952865 45957700
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Neighbor

gene id symbol gene type direction distance location
LOC110535744 LOC106580121 coding downstream 10459 45923474 ~ 45942406 (-)
LOC110535743 card9 coding downstream 30578 45916594 ~ 45922287 (-)
LOC110535738 ntng2 coding downstream 266974 45626719 ~ 45685891 (-)
LOC110536624 NA coding downstream 764489 45186482 ~ 45188376 (-)
LOC110535733 LOC106580130 coding downstream 825603 45102479 ~ 45127262 (-)
gstt2 LOC106580120 coding upstream 8897 45966597 ~ 45969187 (-)
LOC110535747 LOC106580117 coding upstream 15355 45973055 ~ 45990422 (-)
LOC110535749 LOC106580115 coding upstream 58611 46016311 ~ 46031217 (-)
LOC110535750 LOC105014428 coding upstream 73489 46031189 ~ 46067844 (-)
lztr1 lztr1 coding upstream 110291 46067991 ~ 46080755 (-)
G984742 NA non-coding downstream 82642 45870010 ~ 45870223 (-)
G984737 NA non-coding downstream 86115 45865112 ~ 45866750 (-)
G984602 NA non-coding downstream 253292 45687016 ~ 45699573 (-)
G984181 NA non-coding downstream 328838 45623339 ~ 45624027 (-)
G984175 NA non-coding downstream 334451 45616392 ~ 45618414 (-)
G984809 NA non-coding upstream 53052 46010752 ~ 46012725 (-)
G984856 NA non-coding upstream 165145 46122845 ~ 46124545 (-)
G984858 NA non-coding upstream 169726 46127426 ~ 46127647 (-)
G984859 LOC106580269 non-coding upstream 170301 46128001 ~ 46133058 (-)
G984893 NA non-coding upstream 236483 46194183 ~ 46194733 (-)
G984166 LOC106580127 other downstream 346448 45605724 ~ 45606417 (-)
G983486 NA other downstream 852646 45099488 ~ 45100219 (-)
G982818 LOC106613263 other downstream 1342923 44609409 ~ 44609942 (-)
LOC110535714 LOC106580145 other downstream 3316803 42631822 ~ 42836577 (-)
kiaa0825 kiaa0825 other downstream 3361097 42425475 ~ 42591782 (-)
LOC110535758 foxn4 other upstream 245009 46202709 ~ 46223082 (-)
G985191 fam222a other upstream 581833 46539533 ~ 46541987 (-)
gltpa gltp other upstream 634656 46592176 ~ 46602166 (-)
G985626 NA other upstream 688628 46646328 ~ 46646949 (-)
G985699 LOC106613263 other upstream 836919 46793282 ~ 46801092 (-)

Expression

entr1(LOC106580119) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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entr1(LOC106580119) Expression in each Bioproject

Bar chart with 21 bars.
entr1(LOC106580119) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network