si:dkey-98f17.5 (LOC106580116)


Basic Information

Item Value
gene id si:dkey-98f17.5
gene name LOC106580116
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 45993188 ~ 46012718 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620975.2
TTTAGACGTCAATTTGACAACTGTATTCAATCTAGCCGTAACCTCATCTAAAACGCAAATGGTTCTATCTGTGAGCAAATCATAGACACTGTGCATCACCGTAAACGTTCCCCCTGTCATTTTAAAGATGGTGGAAGGTAGTTCTACAACTGTCATGTCGGGCGGTAGAAAGCCCCGTTCTGTGGCAAACCCTCTGGAATCCGCGATCACCACACCCAGTGAACGAatcttgagagaatgccacaATTTATATATCGACAGCGAAAACGggctGGTGAAGATATCAAGCCGACTGGGTCTCCGGCTCCTTCCTCCACGGAAGAAGATCATTGTGATGATAATGGGGAACCACTCTGCTGGAAAAAGCTCATTTATTAATTGGTATGTGGAAGAACATATACAGAAAACAGGCGTTGCCATAGAAACGCAGGGATTTACGTTTATAACAAGTGGTCGGAAAAGAGAATCGCTGACGGGAAATGCCACGCTCCATCTCTACCCCCATTTCCGACCACTCCTGGAGTTTAAAGGTGTTACGGACTATCTGTCGGCTGAGATCTCCACCTCCAAGCAGAAGAAGTTTAGTCTGGTGACGTTCGTGGACACACCGGGCCTGGTGGATGGGGACATGGTCTATCCCTTTGATGTCAACCGCGCGATCACCTCGTTTGGGGAGCAGGCGGACCTGGTCTTTGTGTTCTTCGACCCTATGGGCCAGGCGCTGTGCAAACGCACGCTCAACATTGTGGAGAAGCTGAGCGATAAAGTTGCGGACAAGCTGCGCTTCTACCTCAGCAAGGCAGATGAAGCCGGGagggagacggacagacagCGTGTCATGATGCAGATAGTTCAGGAACTGTGTCGCCGACCGGGGCTGAACAAGTGTGGCTTTGAGATGCCCACCATATACATCCCTAACCCCCAGAAGCCGAGCCGGTGTGTGAACCAGATCGACGGAGTGTGTCAGACGATAGAGAAGACCATCAACCAGGCCGTCCAGAAGACACTGGACCAGCTGGAGAAGGACTGTGACCTCATCTCCTCCACAATCGACAGCAAATTGTCCCAGGACAGGGCGGACGTGAGTTTCAACAGCAGTGTCCGTCTGCACTCCTTCCTGTGTGGGGCACTGGGCATCCTACTGCCGTGCCTTTTCATCCTCAGCTTCGTCGTCAACACCCTGACTCCAGAGGAGCTGCAGGAGCTGCTGGGAGATGGGCTGGCCAAAGCCCTTGGGCTCTCCATGGGTGTAGTTGTCTTTCTGTGGACCTGGATACCAGAGGATTTCCAGATATTGTTTGTGATCATATTTGGTGTACTCTGCTACTTTTTCTTTTGTCTTGCCAAATATTTTGCCCGCCAAGGGAATAGGACTCTTAcgaagaaggagaagagaagccTCACAGAGTACAGCGATTACGTCCAGGATGTCGTCAAAGCCAAGAAGGGAAAACTATACGAGGAGTATCTCGCGCAGTGTGCTGCTGAATATGACTTCTGATAAGGGGCGGGCGGATCCATCGGAAATCTACATGCCGGACTTTCTCCTTGATTGTTATGTAGGACGTCTTCGTAAGTCTTTTCCTAATCACACTGATCAAGGGCTCACATGCCTAGGATTGCACAATTTGGGAAGCTTTCTGGTACATTTATATGCCACTGGGCGGAGGGAGAAGTATTTATTTCTGTAATAAAACtctttctgattggctgggcctggctccacagtgtgtgggcctatgccctcccaggcccacccatggctgcgcccctgcccagtcctGTGAAATCTgtagattatggcctaatttatttatttctattGACTGATATCCTTATACCAACTACAACtgagtcaaatctttgaaattgttgcattttgctttcatatttttgttcagtgtataactCAATTTGTGAGATACAGTATATAACTGTGAGAGAAATATAAAGTGCCTTTTCTATTTGGAAAACTGTGATTTAAGAAGTATCTCAATCTGAAATTTCTCGTGACTTTTTCAGGATGTGTATGTATTTACATCTGAAAGCATGTATGGGACTGTTTACTTGTTTATAGGCTACCTTTCTTAAATGACTCTCTTAAGCTAAAAAGCAAACAATTTGCTGGCAGGTGTTTCTTGATGTCTTTTTTTGAAACATCTTAGATTCTAATGTTTGAACGTGCTTGGGGGATCCTTTGACATTTTGTAATGAATATGTTGTATTACAAACTACAGTATCAATAGAAGTGTCTATTCTGGacaataattattatttattttttctatgGGAATGCAAAGGTAGAGATGATCATGACGTGAGAAcactgtgtgtgtggcagggaATGCTATTTTATGGCAATATATGGAGACACACCAACTCTATTTTAAAAGGCCAGACTTTTTTTTACCAGACTGCttccacatggttagcaaatTAAATAGAA
>TU1120487
cctccctcatgGAAAACATTTCCCACTTTGATTGACAGCCGTTGTCATGTGATTGTGTCCTCAGCCAAGGGAATAGGACTCTTAcgaagaaggagaagagaagccTCACAGAGTACAGCGATTACGTCCAGGATGTCGTCAAAGCCAAGAAGGGAAAACTATACGAGGAGTATCTCGCGCAGTGTGCTGCTGAATATGACTTCTGATAAGGGGCGGGCGGATCCATCGGAAATCTACATGCCGGACTTTCTCCTTGATTGTTATGTAGGACGTCTTCGTAAGTCTTTTCCTAATCACACTGATCAAGGGCTCACATGCCTAGGATTGCACAATTTGGGAAGCTTTCTGGTACATTTATATGCCACTGGGCGGAGGGAGAAGTATTTATTTCTGTAATAAAACtctttctgattggctgggcctggctccacagtgtgtgggcctatgccctcccaggcccacccatggctgcgcccctgcccagtcctGTGAAATCTgtagattatggcctaatttatttatttctattGACTGATATCCTTATACCAACTACAACtgagtcaaatctttgaaattgttgcattttgctttcatatttttgttcagtgtataactCAATTTGTGAGATACAGTATATAACTGTGAGAGAAATATAAAGTGCCTTTTCTATTTGGAAAACTGTGATTTAAGAAGTATCTCAATCTGAAATTTCTCGTGACTTTTTCAGGATGTGTATGTATTTACATCTGAAAGCATGTATGGGACTGTTTACTTGTTTATAGGCTACCTTTCTTAAATGACTCTCTTAAGCTAAAAAGCAAACAATTTGCTGGCAGGTGTTTCTTGATGTCTTTTTTTGAAACATCTTAGATTCTAATGTTTGAACGTGCTTGGGGGATCCTTTGACATTTTGTAATGAATATGTTGTATTACAAACTACAGTATCAATAGAAGTGTCTATTCTGGacaataattattatttattttttctatgGGAATGCAAAGGTAGAGATGATCATGACGTGAGAAcactgtgtgtgtggcagggaATGCTATTTTATGGCAATATATGGAGACACACCAACTCTATTTTAAAAGGCCAGACTTTTTTTTACCAGACTGCttccacatggttagcaaatTAAATAGAACAGTCAGTTCGGTCAGTGCTTTCTCCTGCCTCCTATTTCCTTTGATGAGAAAGATTCCCAATACAGAATGTAGAATGGTTCACACAGCACAGTATAGTAGTAGTGAAATGTGTGAAAAGTatttttaagcaataaggcctgaggtgtaacatattgccaatataccagggctaggggctgttcttaagcacgacgcaacttggagtgcctggacacagcccttagctgtggtatattggccctatatcacaaacccccccaggtgccttattgctattataaactggttacgaatgtaattagagcagcacgaataaatgttttgtcatacccgtggtatacagactgatataccacggctgtcagccaatcagcattcagggctcgggCCCACCCAGTTTCTAATCCTGCTTGTGAAGTGAAGCCCTGACTAAGCACTGATGTGTATTTCACCTTCTGAATGTCTCATGTTGTTTGGTAGTACATGGTTATAATACTCAATTATATGGATTAGTATGCCGTTTGTCTTACTGCTAGTCTTTGGATCAGTGAAACGTAAAATAACTTACCATTTAATGCCTTCAatgaatacagtatatagaatatatatatatttattggcCTCATAAGGTGCCTGTTTTGGGGACATTTATACTTGTACAATGCAGAATACCTCCACTGTGTGCTGTTTGCAATTATGTTTCAAACTGTAAACACAAAGTTTGGGTATGTCTTCGATGTAGCTTTAGGGAATAATCACAACTGAAGTTCTTGTGAAATGGTGCTGTTTCTACATGTATTAGGGTTCTTGTGTACTGGTGTTTCAgatgttatttatttttcaatataaTATACTTAAATTATGTAAATGTATCCTGTTTCTTGCTTTTTGCTTGTATAACTAGTTTACGTGTTGCATTTCCTCAAAGTAGGAGGTATCTTATACATTAAGCTATACTCTGTAACAACAATGTAATATAAGG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106580116 isoform X2

GO:

id name namespace
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620975.2 False 2449 mRNA 0.46 12 45993188 46011735
TU1120487 True 2134 lncRNA 0.39 2 46010437 46012718

Neighbor

gene id symbol gene type direction distance location
chek2 chk2 coding upstream 26565 45957602 ~ 46060717 (+)
pomt1 pomt1 coding upstream 106293 45870829 ~ 45886895 (+)
LOC110535740 rapgef1 coding upstream 127827 45820435 ~ 45866751 (+)
LOC110535739 med27 coding upstream 205885 45686941 ~ 45787303 (+)
LOC110535737 LOC106580127 coding upstream 378228 45502852 ~ 45614960 (+)
p2rx2 LOC106580269 coding downstream 116502 46128237 ~ 46133048 (+)
LOC110535755 NA coding downstream 151284 46163019 ~ 46203981 (+)
LOC110535759 myo1h coding downstream 223334 46235069 ~ 46282246 (+)
LOC110535760 LOC106580104 coding downstream 289762 46301497 ~ 46326649 (+)
mvk mvk coding downstream 323850 46335585 ~ 46360745 (+)
G984342 NA non-coding upstream 5356 45971448 ~ 45987832 (+)
G984310 NA non-coding upstream 76797 45889438 ~ 45916391 (+)
G984309 NA non-coding upstream 97961 45890752 ~ 45895227 (+)
G984299 NA non-coding upstream 124916 45868022 ~ 45868272 (+)
G984406 NA non-coding downstream 56269 46068004 ~ 46069268 (+)
G984439 NA non-coding downstream 123947 46135682 ~ 46136223 (+)
G984482 NA non-coding downstream 211972 46223707 ~ 46223979 (+)
G984526 NA non-coding downstream 277489 46289224 ~ 46289425 (+)
LOC110535735 fibcd1 other upstream 580106 45189846 ~ 45413082 (+)
G982236 LOC106580137 other upstream 1707219 44280925 ~ 44285969 (+)
G981690 NA other upstream 2277891 43660374 ~ 43715297 (+)
G980019 NA other upstream 3356479 42631824 ~ 42636709 (+)
G979965 NA other upstream 3459880 42528520 ~ 42533308 (+)
G984422 pesc other downstream 96185 46107920 ~ 46109940 (+)
G985257 NA other downstream 595657 46607392 ~ 46607681 (+)
G985387 LOC106586052 other downstream 835968 46847703 ~ 46875441 (+)
G985401 NA other downstream 911204 46922939 ~ 46923827 (+)
G985597 NA other downstream 1239577 47251312 ~ 47252236 (+)

Expression


Co-expression Network