Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110535758 |
| gene name | foxn4 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 46202709 ~ 46223082 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| foxn4 | Enables DNA-binding transcription factor activity and sequence-specific DNA binding activity. Involved in atrioventricular canal development and heart looping. Acts upstream of or within heart valve development; positive regulation of transcription, DNA-templated; and regulation of heart contraction. Predicted to be active in nucleus. Is expressed in several structures, including forebrain neural keel; nervous system; optic vesicle; pericardial region; and presumptive neural retina. Orthologous to human FOXN4 (forkhead box N4). |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036935550.1 | False | 3915 | mRNA | 0.46 | 10 | 46205489 | 46223078 |
| XM_036935549.1 | False | 3988 | mRNA | 0.46 | 10 | 46205489 | 46223082 |
| TU1121161 | False | 3708 | TUCP | 0.41 | 2 | 46202709 | 46223081 |
| TU1121155 | True | 1123 | lncRNA | 0.46 | 2 | 46206461 | 46208003 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| pole | pole | coding | downstream | 32881 | 46135626 ~ 46172608 (-) |
| pes | pesc | coding | downstream | 79004 | 46107907 ~ 46126485 (-) |
| gal3st1a | LOC106580113 | coding | downstream | 99681 | 46085454 ~ 46105808 (-) |
| lztr1 | lztr1 | coding | downstream | 124734 | 46067991 ~ 46080755 (-) |
| LOC110535750 | LOC105014428 | coding | downstream | 137645 | 46031189 ~ 46067844 (-) |
| LOC110535030 | kctd10 | coding | upstream | 57114 | 46280196 ~ 46286223 (-) |
| mmab | mmab | coding | upstream | 108160 | 46331242 ~ 46335481 (-) |
| LOC110535765 | trpv4 | coding | upstream | 340499 | 46563581 ~ 46586735 (-) |
| gltpa | gltp | coding | upstream | 369094 | 46592176 ~ 46602166 (-) |
| LOC110535767 | git2 | coding | upstream | 387034 | 46610116 ~ 46645542 (-) |
| G984893 | NA | non-coding | downstream | 10756 | 46194183 ~ 46194733 (-) |
| G984859 | LOC106580269 | non-coding | downstream | 72431 | 46128001 ~ 46133058 (-) |
| G984858 | NA | non-coding | downstream | 77842 | 46127426 ~ 46127647 (-) |
| G984856 | NA | non-coding | downstream | 80944 | 46122845 ~ 46124545 (-) |
| G984809 | NA | non-coding | downstream | 192764 | 46010752 ~ 46012725 (-) |
| G984908 | NA | non-coding | upstream | 2396 | 46225478 ~ 46225685 (-) |
| G984909 | NA | non-coding | upstream | 6150 | 46229232 ~ 46229432 (-) |
| G984911 | NA | non-coding | upstream | 7250 | 46230332 ~ 46230552 (-) |
| G984919 | NA | non-coding | upstream | 19786 | 46242868 ~ 46243577 (-) |
| G984166 | LOC106580127 | other | downstream | 599072 | 45605724 ~ 45606417 (-) |
| G983486 | NA | other | downstream | 1105270 | 45099488 ~ 45100219 (-) |
| G982818 | LOC106613263 | other | downstream | 1595547 | 44609409 ~ 44609942 (-) |
| LOC110535714 | LOC106580145 | other | downstream | 3569427 | 42631822 ~ 42836577 (-) |
| kiaa0825 | kiaa0825 | other | downstream | 3613721 | 42425475 ~ 42591782 (-) |
| G985191 | fam222a | other | upstream | 316451 | 46539533 ~ 46541987 (-) |
| G985626 | NA | other | upstream | 423246 | 46646328 ~ 46646949 (-) |
| G985699 | LOC106613263 | other | upstream | 571537 | 46793282 ~ 46801092 (-) |
| G985835 | NA | other | upstream | 836301 | 47059383 ~ 47060663 (-) |
