XLOC_002840 (zpld1a)


Basic Information

Item Value
gene id XLOC_002840
gene name zpld1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 29112756 ~ 29120535 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005267
GTCAGTCTCGCGCCACAGCTGAGAACAGATGGAGTACCGCTGATTCTACAGCTGCCAGGAAAGCGGgaaaaagaagcattttctgaTGAATCCAAAGAAATCGCTCATACATTGTCTTCCTCAGGAGTTGAAATGGAACGTTTGTGTGTGATTCTCTTGCTTGTAAGTAAAACTTTCATAGCGAATGCTCAATTCAATGGGTTCAACTGTGATGCCAACTTCCACAGCCGCTTCCCCGCCGAGCGGGACATCAGTGTGTATTGTGGAGTTCAAACCATAACTCTGAAGATTAATTTTTGCCCGGTGCTTTTTTCTGGCTACACTGACACTGACCTGGCACTGAATGGGCGTCACGGGGATGCCCACTGCAGAGGCTTCATCAACAACAACACGTTCCCCACGGTTGTGCTGTTTAGCATCAGTCTCAACACTCTGGAGTCTTGCGGAAACTCACTGGTGGTCTCTACGGCTCATGGGCCCAACGCCTATGGGAATCTTTCCCTGGTCCAGATTGGGAATATAGCAGGATACATTGACACTCCGGATCCCCCGACTGTCATCAGTTACCTACCAGGACTGCTTTACAAGTTCAGTTGTAGCTACCCACTGGAATACCTGGTCAACAACACACAGCTTGCTTCGTCGGCCGCAGCGATATCAGTGAAGGACAGTAATGGTACTTTTGTTAGCACGCTCAATTTGCTTCTATACAACGACTCCTCATACATTCAGAACCTCGCCATCCCAATGTCTGGACTTACTCTGAAGACGCGAGTGTTCGCCGCTGTAAAAGCCACCAACCTAGATAGGAGGTGGAACGTTCTGATGGACTACTGTTACACCACTCCCTCTGGAAATCCTAATGATGAGCTGCGATATGATCTTTTCTTTGGATGCGATAAGGACCCACAGACGACAGTGTTTGAGAACGGGAAGAGCCAGATGGGTCGCTTCTCCTTTGAGGTGTTTCGCTTTGTCAAGCACAAAAACCAGAAAATGTCGACTGTTTTTCTGCACTGCGTGACCAAGCTGTGTCGCTCTGATGACTGCCCCATGCTCCTGCCCATCTGCGGTAAGAGGAAGAAAAGGGATGTGTCAGAAAGAAGCGGTGGTGCCTCAGACAATGCAGTTATAACCGCTGGACCCATCATCACCCGAAGTGATGAAACTCCCAGTAATATATCCCAACTAGCGCAGTTAAACGGCCCTCCATTCAAAATGAATTCAGTGACGAGCGCTTTAATTTCTGCCATCGCGATCCTCGCCGTTATGAGCATGTGTTTCTTCATCTTGTCTATGTCGCTGCTGAGGGGAAAACAGACGCCAGCAACATCTCTATCAGGATCCCACAACCCAGCGTTCAGctaaatgcaaacacacacacacatatatatgactGTTCATTCAGCTAAACAATAGCACAATACCCATGTGCAGAGCTCTTCGGTTACAAACTCATGCAGTACAGGGAAATAATATCATGATATCACTCTACACAGCCTTTagctaggtacagttgcctttaTTTGTTACAAAGCAACTTAACacataacacacaattaaacaataAGTCTTTAAAATAGTTCTCAAGCAGGAATGATGCCTGGTTTTAGactcattttaattgtttatgtaatgttattttattttatgaaatgtaATTTCAACAAAACCACATGAGATTCCAGTTAAACCTTTTAAACACATGACTATTGATGTTTTTGGAAAACATTACCAGTGGAATAAGTTGATAAtggtttaaaatgcatttttaaaatggccTTGGTaaatcaaaaactaaatttacatCCACACCACTAGGTGTCAGTGTCCAAGGACTTTTTTTTACATCAGAGCTGGCTCATGAAGTATTTCGTCCCTTTTCATTTTTCAATGGGGATTTTAAAAGTCTCTGTAAAAGCATTTTAAGTCATGAACCAaatcaattaaacaaataatacattttaagcaAGATCAtgaattaaaatttaaacaaaaaattaagttcTTGAACTTCAGgacatgaagaagaaaaaaatgtacaatACA
>TCONS_00005268
CAGGGATGCTGGGTAATCCAGTCAGTCTCGCGCCACAGCTGAGAACAGATGGAGTACCGCTGATTCTACAGCTGCCAGGAAAGCGGGTGATTGAAATGGAACGTTTGTGTGTGATTCTCTTGCTTGTAAGTAAAACTTTCATAGCGAATGCTCAATTCAATGGGTTCAACTGTGATGCCAACTTCCACAGCCGCTTCCCCGCCGAGCGGGACATCAGTGTGTATTGTGGAGTTCAAACCATAACTCTGAAGATTAATTTTTGCCCGGTGCTTTTTTCTGGCTACACTGACACTGACCTGGCACTGAATGGGCGTCACGGGGATGCCCACTGCAGAGGCTTCATCAACAACAACACGTTCCCCACGGTTGTGCTGTTTAGCATCAGTCTCAACACTCTGGAGTCTTGCGGAAACTCACTGGTGGTCTCTACGGCTCATGGGCCCAACGCCTATGGGAATCTTTCCCTGGTCCAGATTGGGAATATAGCAGGATACATTGACACTCCGGATCCCCCGACTGTCATCAGTTACCTACCAGGACTGCTTTACAAGTTCAGTTGTAGCTACCCACTGGAATACCTGGTCAACAACACACAGCTTGCTTCGTCGGCCGCAGCGATATCAGTGAAGGACAGTAATGGTACTTTTGTTAGCACGCTCAATTTGCTTCTATACAACGACTCCTCATACATTCAGAACCTCGCCATCCCAATGTCTGGACTTACTCTGAAGACGCGAGTGTTCGCCGCTGTAAAAGCCACCAACCTAGATAGGAGGTGGAACGTTCTGATGGACTACTGTTACACCACTCCCTCTGGAAATCCTAATGATGAGCTGCGATATGATCTTTTCTTTGGATGCGATAAGGACCCACAGACGACAGTGTTTGAGAACGGGAAGAGCCAGATGGGTCGCTTCTCCTTTGAGGTGTTTCGCTTTGTCAAGCACAAAAACCAGAAAATGTCGACTGTTTTTCTGCACTGCGTGACCAAGCTGTGTCGCTCTGATGACTGCCCCATGCTCCTGCCCATCTGCGGTAAGAGGAAGAAAAGGGATGTGTCAGAAAGAAGCGGTGGTGCCTCAGACAATGCAGTTATAACCGCTGGACCCATCATCACCCGAAATGAAACTCCCAGTAATATATCCCAACTAGCGCAGTTAAACGGCCCTCCATTCAAAATGAATTCAGTGACGAGCGCTTTAATTTCTGCCATCGCGATCCTCGCCGTTATGAGCATGTGTTTCTTCATCTTGTCTATGTCGCTGCTGAGGGGAAAACAGACGCCAGCAACATCTCTATCAGGATCCCACAACCCAGCGTTCAGctaa

Function

symbol description
zpld1a Predicted to be an extracellular matrix structural constituent. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and extracellular space. Is expressed in anterior crista; lateral crista; and posterior crista. Orthologous to human ZPLD1 (zona pellucida like domain containing 1).

GO:

id name namespace
GO:0005615 extracellular space cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-81 Predicted to be an extracellular matrix structural constituent. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and extracellular space. Is expressed in anterior crista; lateral crista; and posterior crista. Orthologous to human ZPLD1 (zona pellucida like domain containing 1).

Ensembl:

ensembl_id ENSDARG00000061835

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005267 False 2049 mRNA 0.43 11 29112756 29120515
TCONS_00005268 True 1328 mRNA 0.49 11 29113437 29120535

Neighbor

gene id symbol gene type direction distance location
XLOC_002839 si:ch211-103f14.3 coding downstream 10907 29087810 ~ 29101849 (-)
XLOC_002838 BX537347.1 coding downstream 189123 28923517 ~ 28923633 (-)
XLOC_002837 BX537347.2 coding downstream 190505 28922135 ~ 28922251 (-)
XLOC_002836 alcama coding downstream 276944 28731749 ~ 28835812 (-)
XLOC_002835 bbx coding downstream 587145 28470307 ~ 28525611 (-)
XLOC_002841 BX005332.1 coding upstream 7667 29128202 ~ 29138004 (-)
XLOC_002842 ccdc83 coding upstream 105645 29226180 ~ 29236860 (-)
XLOC_002843 NA coding upstream 145735 29266270 ~ 29491087 (-)
XLOC_002844 tmem126a coding upstream 149463 29269998 ~ 29272757 (-)
XLOC_002845 CU861448.1 coding upstream 587533 29708068 ~ 29708182 (-)
XLOC_002834 NA non-coding downstream 647730 28460213 ~ 28465026 (-)
XLOC_002833 CR392341.3 non-coding downstream 657585 28454500 ~ 28455171 (-)
XLOC_002832 CR392341.2 non-coding downstream 663888 28447906 ~ 28448868 (-)
XLOC_002854 CT737197.1 non-coding upstream 1410608 30531143 ~ 30531257 (-)
XLOC_002858 NA non-coding upstream 2142317 31262852 ~ 31295006 (-)

Expression


Co-expression Network