XLOC_028400 (tm7sf3)


Basic Information

Item Value
gene id XLOC_028400
gene name tm7sf3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1732825 ~ 1757460 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055145
TACAGCGAAAGCGCTCGTCTACTGAAAAGTTGTTGCATTTTCGCGCAAAGCAGGAGTGCTTGACACTTCCGGAGGCTGGATGTGAAGCTTCAACATGACTGCCGAATGTAAATGCTTCTGCTAAAGCGTGTTTATGGACTGGACTGATCCGGGAAAATGCCACTGAAGAGAGAATGTTTGGTTCTGCTCGTCTTGTCGTGGGTCGGTTCACTGCGCGCTCAGGATGAGAaCCGTGTGGTGTTTTCCCTGGGAACTTTCCAGAATGTGAGCATCCCAGTGAACGGAACGGTTCAGGCTGTCGTTTCCCGGATTCCTGCGGATGTTTCCTTCATAACACTGCAGTTTCACACACAGCACCGCAATGTGACACTTTCATACTTACAGGAACCGCTTTTTGGTTTCTTTGTCACGGCAGAAGATGCTGGATTATTGTCCACGCTGATCCCCAGTCAGTTCAGCATCTCCTGGTTCCTGAACACCCCCGACGGCAGCAGCGCAGCAGCGATTGGTGTAATTCTGCCCTACACCAGCACTGATCCTGTTCCCGGAGCATGCAATCAGGAATTCCCAATGGAGATCGATCCTAATATATACTTGAAATACAACCTGTTTGAGACCACGATTACCTTTGCTCCTGCTAACCTCGGATATGGAAGAGGGGAGATTCCTCCAGCGTGTGACGTGCAGACAGACTCCAGCACTCGTTGGCGGCTGGTTTATGAAGTGTATCAGTTCTTCCTGCCTGAAggcgaccaatcagagcagagtctgATCAGCAGCATGGAGAGAGTGGCCAATGTGCAGAACGTGCAGGACAACAGCAGAAAAGTGGTGTCTTTATCCTCTCAAGAGAAGACGCAGTTCTCCTTCATGTCTCTGCCTGGTCAGGGTGTGATTTTCTCAGTGATTGTTCGAGATCCAGTGCTGAACACTTCAGCCTCCTACATCCCGGTCCACACATACGCCTGCAGCTTCAACTCTACACTGGATGGGTGTCAAGATCTGGACAAAGTCTCCACGAAAGTGTTTTTCACTGTGCTGGGTTTGGCTgggctgtttgtgtgttttgtgggtCATCGCTTCTTCAAATGTGAGCTGTTCGGTATGGGATTTGGATTTATGGCGTTTCTCTTCTTTGTCCTGATCACCAGAACCACAACGCTGGATTACAACATTCGATTGGCTCTGACAGCACTGATGGGGGTGGTCGGGGGCGTGGTCTTGGTGATGAGCTGGTGGCGGTTCGGTTCAGTCTTGGCCTGTGTGTTAGTGGTTGGACTCATTCTTGGATTTCTCATCTCGTCCGTCGTCTTTTTCACTCCACTTGGTGATCTTCCGGTCTTCCACAATGATGTGGTCTTCTGGGTGGTGTTTGTTTGCATTATAGTGGTTGTTCCTTTGTTCTTCATCAGGTGGCCCAGAGAGGGTAATATTATGACATGTGGTGTGGTGGGTGCGTATACTGTTGTCCTGGCAGTCAATGCCTACACCTACACCAGTCTGTCCTACATCACGCTGGACGTCCTGAAGCGCTTTCTCAACCACAACTTCAGCCGTGCGTTTATTTCTGTCCCGCTGCAGGATATCGATTTCGTGATGATCACGGTGTGGGTGGTTCTGGGGGTTTCGGGGATCATTGTGCAGCTCTATCGAGAAAAGTCTCGCCCATTTTTCCCACCAAGCCCGTATGTGTTGTGGAGGCAGGAGCGAGAACGCCGGAAAACCAACGTTCTGGATCCCAGCTACCACAAACCATCATTACCAGCCCAAATAATGGGACGTATCCGTCAACTTACACGCCGTGCAGAACCGGCCGGAGAAACCACACCGCTCCTGCTTTAACATTTGACtctatatgaagagtttagatgcagaaACCTCGAGATTTTCTGCTAATATGAGCATTTTCTCCATCTCTTGTGTTTAGGCTCGGTCATTTTACTCTTATAGTGATGGATAAGTTCATTGCCTTTCAATGAAATAACAtagaaatgctcattttaaaagaacatttcagaGATTTTTgcgtctgaactcttcatatacaagTCTGTAGTGTGAAATATGAGGACTGAGCTCGATTTTATAGAGCCTGGAGACTCGGACACGGCAATGAGAAAGGTTGcaaaactcaaacacacacacaacactaatGATAATGTGCActggtgtgtgttttgtgtgtttttttcccagTGCTTGATCACATTTAGTctcattaaaggggtagttcacgcaaaaatgaacattctgccatcatttacccTCCCTTTATTTGCTCTAAAGTTCTTCTGTTGAGCTCAAACgaagatatcttgaagaatgCTGCAAACCTGTACTTGACTTGCTTAGTTGTTTCTGCTATGgaaaggtcaatggttacaggttttaaacattcttcaaaatatctactttttgtGTTTACcacttaagggagagtaaatagtaaggaaataaaatatttctgggtgaactatccctttaatcagaACTTGAGCACATTGCTGAACTCACGTTTAGTCTCATTTAGGGGTTAGTTCACGCAGAAATGAACATTCTGCTATCATTTACTCTGGTAAAgcagtttgagtttcttctgttgagctcaaacgaagatatcttgaagaatgCTGCAAACCTGTACTTGACTTGCTTAGCTGTTTCGGCTATGgaaaagccaatggttacaggtttttagcattcttcaaataaTCTACTTTTTGTGTTTACcacttaagggagagtaaatagtgaggaaataaaatatttctgggtgaactatccctttaatcagaACTTGAGCACATTGCTGAACTCACGTTTAGTCTCATTTAGGGGTTAGTTCACGCAGAAATgaacattctgccatcatttactcttgtaaagcagtttgagtttcttctgttgaactcaaaagaagatattttgaagaatgtttgaagaAACCTGtagtttttccttctatggaagtcaatggttacaggttttctaaCACCCTTCAAAAGATTTACTTTTGTGTTTACCACTTAAAAGAGAGTCAATAGTtcttcttttttgggtgaacgatccaCTTGAAGCTACTGACCTCCAGCATATTTAGCATAAACCTGATTTTAGatgcattttagcatgttttgagAGACGATAGACATGGTAGACGTGCcacttttttaaaactgttttgtcCTATTTTTAATTGCATCTGGTTAATATAACCGCACcaccatgtgcctgtcagagtgagTTTGTTTTTAAAGACACCCAGTTTACCATTGAAATGAATGTATAACACACTGCCACTGCAGACCGAATGAACCAGTGTTCATTAATAGCCACTGTAAGCCTCTACGGCTGATTTATGTGTGTTTTACCTACGACGAAGCGATTAATTATTTCCAGATGATGGAAGTAATGAGCTTATTTTGACTGCGTTCCTGTGGGGATGTGATTGCTGCTTCACTTCATTTGTGTAAAGCACTTGTTAATGCGGATTTTAAATGTAACATTgagttaataaatgctttataaatgGACATGTAGCTCTTATTGAGACGCAAAGCTTACAGACCGCAGCTCTGTGAACTTACGGTCAACTTCTGATCTCCTCTCAGGGTTTCTTCTTgtgatttgtcttttttttttttttgtatctctcACAGAAGCAAACTTCTTACTTGTGTTGTAAAGCATTTAAAACGTGCTTTACTGTCTATGATGTTTTTAAACGGTAGCCGCGTGTATTATTATGTCTgttttgtataaaattaaatgCTTAATAAAGTTGTAATTCGTGCCACAACACCTAAA

Function

symbol description
tm7sf3 Predicted to be involved in negative regulation of programmed cell death. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human TM7SF3 (transmembrane 7 superfamily member 3).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1770 Predicted to be involved in negative regulation of programmed cell death. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human TM7SF3 (transmembrane 7 superfamily member 3).

Ensembl:

ensembl_id ENSDARG00000093658

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055145 True 3807 mRNA 0.43 12 1732825 1757460

Neighbor

gene id symbol gene type direction distance location
XLOC_028399 gas2l3 coding downstream 12177 1689312 ~ 1720648 (-)
XLOC_028398 arid2 coding downstream 48478 1647098 ~ 1684347 (-)
XLOC_028397 zmp:0000000711 coding downstream 235441 1469106 ~ 1497384 (-)
XLOC_028396 CABZ01068469.1 coding downstream 329748 1388965 ~ 1403077 (-)
XLOC_028395 ptn coding downstream 372330 1301436 ~ 1360495 (-)
XLOC_028401 dnajc2 coding upstream 8873 1766333 ~ 1785120 (-)
XLOC_028402 nudt4b coding upstream 31288 1788748 ~ 1801619 (-)
XLOC_028403 ube2nb coding upstream 52102 1809562 ~ 1818315 (-)
XLOC_028404 mrpl42 coding upstream 64177 1821637 ~ 1824836 (-)
XLOC_028405 pwp1 coding upstream 68379 1825839 ~ 1839352 (-)
XLOC_028393 NA non-coding downstream 473084 1054661 ~ 1259741 (-)
XLOC_028394 NA non-coding downstream 498589 1223164 ~ 1234236 (-)
XLOC_028392 NA non-coding downstream 696779 1028836 ~ 1036046 (-)
XLOC_028391 NA non-coding downstream 709125 1022316 ~ 1023700 (-)
XLOC_028389 NA non-coding downstream 719730 1010960 ~ 1013095 (-)
XLOC_028406 NA non-coding upstream 91200 1848660 ~ 1855771 (-)
XLOC_028408 NA non-coding upstream 158326 1915786 ~ 1979057 (-)
XLOC_028417 NA non-coding upstream 634612 2392072 ~ 2440175 (-)
XLOC_028418 NA non-coding upstream 688297 2445757 ~ 2479720 (-)
XLOC_028422 NA non-coding upstream 906708 2664168 ~ 2666870 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000068_00005604_00021309 TM7SF3 coding CI01000068 null 5604 ~ 21415 (+)