XLOC_028401 (dnajc2)


Basic Information

Item Value
gene id XLOC_028401
gene name dnajc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1766333 ~ 1785120 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055146
ATGTTGACGGAGGCGTTAGAGGGGCAGCTTACGGTGGTTTATAACACCGTCGCCGccTCAGTGCAGGTTCAGGTGGAGCCGGTCGGCCGCTGGTTCGAGGCTTTTCTGAAGCGCAGGAACAGAAATGTGTCGGCTTCGTTTCAAGAgctggaggaagaggaggagctgtcagaggaagaggaggatgaagagcTTCAGCTGGAGGAGTATCCCATGCTGAAGACACTGGACCCCAAAGACTGGAAGAACCAAGATCACTATGCTGTTTTAGGTCTGGCACACGTCAGGTATAAAGCAACGCAGAAACAGATCAAAGCTGCTCACAAAGCGATGGTCCTTAAGCATCACCCAGACAAGCGGAAAGCAGCAGGAGAGCAGATTGTGGAAGGCGATAATGATTATTTCACATGCATAACTAAAGCAATAGAGATCCTGTCAGATCCAGTGAAGCGGAGAGCGTTTGACAGCGTCGATCCAACGTTTGACAATGCCGTTCCTACAAAAGCAGAAGGCAAAGAAAACTTCTTCGAGGTGTTTGCACCGGTGTTTGAGAGGAACGCCAGGTGGTCTGTTAAAAAGCACTTCCCCAGTCTGGGAACTATGGAGTCATCGTTTGAAGATGTGGATAATTTCTATTCATTTTGGTACAACTTTGACTCCTGGAGAGAATTTTCCTATTTAGACGAGGAGGAAAAGGAGAAGGCTGAATGTCGAGATGAGCGGCGCTGGATTGAGAAGCAGAACCGAGCATCTCGAGCACAGAGGAAGAAGGAGGAGATGAACCGGATACGGACCCTTGTTGacACGGCCTACAATGCTGACCCGCGGATAAAGAAGTTTAAAGAGGAGGAGAAAGCCAGGAAAGAGTCTGAGAAGAAGGCCAAAGTGGAGGCCAAGAAACGAGAGCAGGAGGAGAAAGAGCGGgcacgTCAGCAGCAGGAGGAGGCGGCGCGGCTGCTGAAGGAGCAGCAGGAGGAGGCGGCGCGGCAGGCAGCTCAACAGGCTAAGAAGGAGAAAGAGGCGCAGAAAAAAGCCATTAAGAAAGAGCGGCAGAAACTCCGCATGACCTGCAAGAGCCAAAACTACTTCACAGACAATGAGGCGGACAGCGTGAGGATGATGGAGGAGGTGGAGAAGCTCTGCGACCGCTTGGAGCTCATCAGttTGCAGACGCTCAATGAAGCTTTGTCTGCTGGCAATAAAGAGCAGAGTAAAGCAGCTCTGGAGAAACAGGTGCAGGAGGTGAACATGCAGCTGCAGAAGGAGAAGGATGCAGAGCTGCAGGCTCAGCAGGCAGCGCGTGGCTCTGAACACAGCAGTGCAGCAGGAGGACAAAACAACAGAGGCTGGAGCGAAGAAGACCTGCAGCTGCTCATCAAAGCCGTCAACCTGTTTCCTGCTGGAACAAACGCCAGGTGGGAGGTGATCGCTAACTACATGAACCAGCACTCCAGCAGCGGCGTCAGGAGAACCGCCAAAGACGTCATCAATAAAGCCAAAACACTGCAGAAACTGGatcCGCACCAGAAAGATGAGATTAACCGAAAGGCCTTTGAGAAGTTTAAGAAGGAGCATTCAGCCGTTCCTCCCACTGTAGACAACGCCATGCCGTCAGAGCGATTCGATGCTGTAGGTGCAGACTCGAACGCTGCCGCCTGGACCACAGAGGAGCAGAAGCTTCTGGAACAGGCTCTGAAAACCTACCCGGTGAGCACGGCCGAGCGCTGGGAGAGGATCTCTGAGGCGGTGCCCGGACGCTCCAAGAAAGACTGCATGAAGAGATATAAAGAGCTGGTGGAGATGATAAAGGCTAAGAAAGCGGCACAGGAACAGGTCGctgctaaaaacaaaaaatgacaaaacacacacacacacacaacctggtcttttaactttatttgtgttgttctttattttataataaaataaacatggaaAAAAGCAGATCTGGAGCTCTGTGGCCTGTGTTGAGTGTTTACCAGCACATGCCATTGCGGATGCTGTTATAATCCAGCAGCTGCTCGATGGGTCCTGCAGACGGTCAATAattggtgtgtttaattagggagaATATCAAACACTTCATTACTACCAGTGTTGGGTTAACAGATAAGTCATATATTACAATCTTAAGCCTatcttaatattttaaagaaggcaaacataacataacacacaCTTTCACATTACTATCCTTAAAAAAGTAACTGATATTACAACCATACACCAATCTCAATCTTTAAAAACTGGcagaaatattataaaatatactttcacattacttttatttaaaaagtaacacatttagtcactttttccatttaaaaatgGACTTAAGATTGTGATGTTATGACCTTTTTTTAACATTCTCGATTGTTTTTAAAGGAGAATGAACAGAACAAAGAGTTAAATTCAATTTATTTGTACACCAATAACAATGTAACACTAAAATAAGAGtccattagtttatttatttactaacatcaaCAAACAACGGATAATAGAGAATTTAATCATGCAGGTTAATATTTAAGTTGttgattgttagttcatgttaactcgttGTGCATTATCTAGCgctgttaataatgcattagtaaatgttaaactataattaatgcATGCTGTTCAAGATTGTTCAAGTTAGTAAATGCatgaactaatggaccattatttcaaagtgttaccCAAATTACTATATCATCCTTTTACATCTGAACTATTTACTCTGTCTGAGTAACaagaaaaaagtaatatattatatttaaaagtctGTTAACCCAACACTGAAGAGCACAGAGTGAAGACGTCCACTTACCCACAGCTGCAATAGCAGGAGCTTTATTATAGATGTATTTCAGACACACGTCCTTTATAGTCGTGGCGttaatggcctgaggaaagaaatgGGCAGATTTAAGCTGGATTTGGACACACACTGGCTCTCATTCACTTGTAATCAGTAACTAATACTAATTTTTAACTGAGAATAagtctatttttaatatttctaacGAAAACTTTCTGCTTAATTCACAAATCGTGCACATGTGCTTGAGTTAATATAGTGAACATGAATTGTTTTCAGAAAGCGTCCTTGTGCACTATATTACTCATTTGCATAATACACGcccacattacatttacatttagtcatttagcagacgcttttatccaaagcgacttacaaatgaggacaaggaagcaatttacacaactataagagcaacaatgaataagtgctgtaggcaagtttcaggtgtgtaaagtgtaagaagtaaaacattagtaattttttttgtagttagtggaggagttagagagggaattgcagattaggaagtggagactaaatagttgagtttttagtggtttcttgaagacagcgagtgactctgctgtactgatgcagttagggagttcattccaccaactgggcagattgaacgcgagagttcgggaaagtgatttcttccctctttgggatggaaccacgaggcgacgttcattcactgaacgcaagtttctggagggcacatacatctgcagaagtgagagcagataagaaggagcaaagccagaagtcgctttgtaagcaaacatcagagctttgaatctgatgcgagcagcaactggcagccagtgcaaacggatgagcagcggagtgacatgtgctcttttaggttcattaaagaccactcgtgctgctgcgttctgaagaggtttgatagagttagctggaagcccggctagtagagagttgcaatagtccagtctgcaCATTAGCTCCATATAAGGGCAGAAATCGACAGAGATAATTATAAGAAGTCAAATTATGAATTAGGAAGAGACAATTATGGCACCCAAACAAACAGTAATAGAGTTTATTTTTGATGTCGGCTGCTTTCAGTTCTGAAAAGGCGAGGTGAAACACTGCATTTTTGTTGACTTTAGATAAGAGCTTTTTTTTATAATCCAAAACACTTGATGCCAATAGAAAACCATTTAAAAGGCACCTCTTAGCTTAATCTCATTATATATAAGGTTTTTTTAATCGTGCATGGATGATTATTGTGTATTTGttgttatagatttttttttttttgtagatgttAGTATGATTGTTTTGATGAATCATGATTTATTTTTGAAACATCTGTCCGTACGTGCATTTTTGCATTTCGTGCATTTTCgtgcatttatttttctaaagAGAGAATCAAATGTTTACGCACGTCTATTCTGGCCTCGAGCTCGTGCAGAGGAATCCTGCGACTGTAGCACAGCATCTGACGCCCGATGTCCTCACAGATGGGTGTGGATCCTGCACACACATGCATCACAcagcgtcacacacacacatcatatgtGAGCACGCACACTTCACACATCTCTACACAGACagatgcacacagacacactgaTCTGGCACTGACCGTCCAGGTGAAGCAGCATGTTGGTCTTCAGCAGGTTCTTGGCTCTGTTCACTTCACTTTCAGTCACACTCGTGCACAGAGACTTCCTGAAAGCAAACGTGTGTTCATTACCGGAAATGATCGGCCCTCGTTTGTgtcaaattttttattattttacaaacaacgaagagttttttttcttcaacattTTCAAACCGTAGCTTCATTAAATCATTTCTAATGGCTGAttgcttttgtctttgccatgatgacagtaaataatatttgactagatatttaagaGCTTATAAAATATTCCTGAACTCGCAGAACTCTGAGGTTCACTTCTCACCATTCCAGCTGAGTGAATCGGATCATGTCGTGGACGGTTCCCGGCTCACACACCATGTAAAGCCCCCACAGGCCTGTGTCTGTGTAGCAGGTGTTGAAGGACTGGAAGCTGTGGCACAGGTTCCCCTGGCAGGACATCTGGGCCAGTTTACTGGACaagttctgcaaaaaaaaaaacttgctttggTTAGCTGAGCGAACACTGCGTTATGAAGCTTTGTGAATCAGTGATGGACGATACACGAATGAATCATTGTTTTTAACCAGATCTTCAGTGTTTGGTCAGTTCACCAAATCAAActgtttaaaccaggggtcaccaatctcggtcctggaggttcggtgtccctgcagggtttagctccaacttgcctcaacacacctgcctggatgtttcaggtatacctagtaagaccttgattagcttgttcaggtgtgtttgattagggttggagctaaaatctgcaggacaccggccctccaggaacaagtttggtgatccctggtttaAACAGTTTgcatctccagtaagcacttatccacaaattacttagggcctactcacactatgccatccgtaccatgcccagaCCCGTTTACCGGATCaggaagtgtgagtgcgctgaatcgggctcaagctcAGTTCAcctggccggccctggcccggttggaagaggtgggcctgagcgcggttcacttgggcccgaaactgaaagctaGACGTgattttaagggactgtttgatatgatttattaatcattcttactgttcagtaaacgcaaactgccgtagtttattaaagacgcaaacccctcactgcacgacagctgcaccttcagcagacctcctcattcctgcagcacgagagctttatgattatgagcgccaaaagtggcggatctgtttggtgaaatatctgactgcgtttcaccgcatctctaaggactgtttggcgaaatatctgactgcatgtcactgcatatcaaaccactgaaacgatataactacagaaatctccactgtgctgctgattgacagtgcttctcactgaacagtgcagcagcgatgacataagcgtgccgaggcccgattgtggagtgagtgcgggccgtcgggggagacgggaggggggacaagcgtgctttggcccggtttgaggcaactgtatcTAGTGTGAGTCTGGCCTTACTCTTTAACATGCCTGATACTAGGCATGAGACGACTATTatgttcaaaaatgtgttttctctctgttaaacaacacttgagaaatgtaaatgttttaataaaaatttcacagtaggttgaataattaaaaaacccTTAATGGCGTAATTTAGTTCTTCAGAATAATTTTCAGCACATTGAGTCTCTATTCAGCATTGAGTGAAGATCTCACCATTCCTCCGCCGAGCGAGCGGTCCCAGTTCCCGATCAGTGTGTTTGCCACCATCAGAGGAATGGTGTCTGGATGAGACCAGCCGACCGCCTCCACGGCCACTGCGATATGAGCCAGAGGCATCTTATCATCACGCACACGAATCTGGAGAAAACACGCGGTAAGacttttaaaaatcttaactTGCTTCAaagttttattgtataaaaaaaaaaaaagttgattagAAGTGCATTACTGTAACGCTTGATTTTGTCCATTAGTGCTGTTTAATGATCATGACTACatccttcaaaataaaagtttgtatttacatattgtGCATGTATTGTGTAAatttaatatgtatataaatgcagatgcatacatttatatatctttttattatatttttattaaaataaatataaattacaaataaacattgtacatgttttatttttataaataaaaaattgtgcgtgtgtgtatatatgtgtgtgtgtgtatatatatatatatatataaacaaaattctATACATGTAATCATGGATACAagataaatatacacagtacacaaaaTTATGTAaactgacttttattttgtatttgattaA
>TCONS_00055147
agttTGCAGACGCTCAATGAAGCTTTGTCTGCTGGCAATAAAGAGCAGAGTAAAGCAGCTCTGGAGAAACAGGTGCAGGAGGTGAACATGCAGCTGCAGAAGGAGAAGGATGCAGAGCTGCAGGCTCAGCAGGCAGCGCGTGGCTCTGAACACAGCAGTGCAGCAGGAGGACAAAACAACAGAGGCTGGAGCGAAGAAGACCTGCAGCTGCTCATCAAAGCCGTCAACCTGTTTCCTGCTGGAACAAACGCCAGGTGGGAGGTGATCGCTAACTACATGAACCAGCACTCCAGCAGCGGCGTCAGGAGAACCGCCAAAGACGTCATCAATAAAGCCAAAACACTGCAGAAACTGGatcCGCACCAGAAAGATGAGATTAACCGAAAGGCCTTTGAGAAGTTTAAGAAGGAGCATTCAGCCGTTCCTCCCACTGTAGACAACGCCATGCCGTCAGAGCGATTCGATGCTGTAGGTGCAGACTCGAACGCTGCCGCCTGGACCACAGAGGAGCAGAAGCTTCTGGAACAGGCTCTGAAAACCTACCCGGTGAGCACGGCCGAGCGCTGGGAGAGGATCTCTGAGGCGGTGCCCGGACGCTCCAAGAAAGACTGCATGAAGAGATATAAAGAGCTGGTGGAGATGATAAAGGCTAAGAAAGCGGCACAGGAACAGGTCGctgctaaaaacaaaaaatgacaaaacacacacacacacacaacctggtcttttaactttatttgtgttgttctttattttataataaaataaacatggaaAAAAGCAGATCTGGAGCTCTGTGGCCTGTGTTGAGTGTTTACCAGCACATGCCATTGCGGATGCTGTTATAATCCAGCAGCTGCTCGATGGGTC

Function

symbol description
dnajc2 Predicted to enable chromatin binding activity and ubiquitin modification-dependent histone binding activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to act upstream of or within chromatin organization. Predicted to be located in cytosol and nucleus. Is expressed in several structures, including immature eye; nervous system; neural plate; pectoral fin; and segmental plate. Orthologous to human DNAJC2 (DnaJ heat shock protein family (Hsp40) member C2).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0061649 ubiquitin modification-dependent histone binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-040426-1912 Predicted to enable chromatin binding activity and ubiquitin modification-dependent histone binding activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to act upstream of or within chromatin organization. Predicted to be located in cytosol and nucleus. Is expressed in several structures, including immature eye; nervous system; neural plate; pectoral fin; and segmental plate. Orthologous to human DNAJC2 (DnaJ heat shock protein family (Hsp40) member C2).

Ensembl:

ensembl_id ENSDARG00000070477

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055146 False 6764 mRNA 0.43 17 1766333 1785120
TCONS_00055147 True 870 mRNA 0.51 6 1771066 1776352

Neighbor

gene id symbol gene type direction distance location
XLOC_028400 tm7sf3 coding downstream 8873 1732825 ~ 1757460 (-)
XLOC_028399 gas2l3 coding downstream 45685 1689312 ~ 1720648 (-)
XLOC_028398 arid2 coding downstream 81986 1647098 ~ 1684347 (-)
XLOC_028397 zmp:0000000711 coding downstream 268949 1469106 ~ 1497384 (-)
XLOC_028396 CABZ01068469.1 coding downstream 363256 1388965 ~ 1403077 (-)
XLOC_028402 nudt4b coding upstream 3628 1788748 ~ 1801619 (-)
XLOC_028403 ube2nb coding upstream 24442 1809562 ~ 1818315 (-)
XLOC_028404 mrpl42 coding upstream 36517 1821637 ~ 1824836 (-)
XLOC_028405 pwp1 coding upstream 40719 1825839 ~ 1839352 (-)
XLOC_028406 NA coding upstream 63540 1848660 ~ 1855771 (-)
XLOC_028393 NA non-coding downstream 506592 1054661 ~ 1259741 (-)
XLOC_028394 NA non-coding downstream 532097 1223164 ~ 1234236 (-)
XLOC_028392 NA non-coding downstream 730287 1028836 ~ 1036046 (-)
XLOC_028391 NA non-coding downstream 742633 1022316 ~ 1023700 (-)
XLOC_028389 NA non-coding downstream 753238 1010960 ~ 1013095 (-)
XLOC_028408 NA non-coding upstream 130666 1915786 ~ 1979057 (-)
XLOC_028417 NA non-coding upstream 606952 2392072 ~ 2440175 (-)
XLOC_028418 NA non-coding upstream 660637 2445757 ~ 2479720 (-)
XLOC_028422 NA non-coding upstream 879048 2664168 ~ 2666870 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01064905_00000552_00001709 DNAJC2 coding CI01064905 null 552 ~ 1709 (-)