XLOC_028402 (nudt4b)


Basic Information

Item Value
gene id XLOC_028402
gene name nudt4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1788748 ~ 1801619 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055148
GACCGGGCTATGGATAGCGGAATCGAGAGAAAGCgttaaagagtcgaattcgctgGATTAAACGCGAAGGAATGATTTAAATTGGATTTAAAACCCAACGCATACCCGTAGGCTCGGTCCAGCGCGGTGCTGGTCCACATCTGACCGTCGGTGGTGACTCACGGAGATAGGGCCGTTAACGGAGTATTGCTGACCGGTCCGATATATATCTACAGATTTCAGCATGAAGTTTAAACCGAACCAGACGCGGACGTACGACCGGGAGGGATTCAAGCGGCGAGCGGCGTGTCTGTGCTTCAAAAACGACCGGGAGGATGAGGTTTTGTTGGTCAGCAGCAGCAGAAACCCGGATCAGTGGATTGTTCCTGGTGGTGGAATGGAGCCGGAGGAGGAGCCGTGTGGAGCCGCAGTGCGGGAGGTCTATGAGGAGGCTGGAGTGAAGGGTAAATTAGGACGTTTACTGGGTGTGTTTGAGCAGAACCAGGACCGGAAACACCGGACATACGTGTATGTGCTGACAGTCACAGAGACGCTGGATGCCTGGGAGGATTCAGTCAATATTGGCCGTAAGCGAGAGTGGTTTTCCGTGGACGAGGCCATCAGAGTCCTGCAGGGCCACAAACCGGTTCACGCCGAATATCTGAGACGCCTCCGGATCAATCGCTCATCCTCCACCAACGGGAACCTGCTCCTGCCGCAGACAAACCCCAGCAACCTCACACCACTCTTCAGCACACCAGCCTCAGCTACTCGCAGATAggacatgcgcacacacactcatcactGTCTACATCACACACCATTTCCCTGCATATATAACACCTTTGGGATGTTCTGTAGAGGGACACACCAAAATCTGTGTGGGATTTTGAGTGAAGAATGCCTTaacgatttttttaaatgtccactgaTTGGTTTTtagtagtgctgggcaaagattagtAATCACCATTagttgcatccaaaataaaagtttgtttggatataatatatgagtgtgtgttatatatatttaacatgcatttgtgataaacacacacaaaactatgCAAAACTAATTTGATACATAGATATATAAAATTTGcatcatatattttatatctaaatagaAATAAGCATagtctcaaatatatgcatgcatgtgtgtgtttatttatatatataagcataataaatatacaccatacacacacttaaatcatgtcaaaactaacttttattttggatgtgattcatTTATGCACAGCAGTTTTTAGTTATTGTGTATATGAGTAATAATTATTAACCAGCATCAATCACAGGCTAGTCATGTGGAAGAGCTGTTTCCCAATTTCACCTGCAGAACTGGGCATTTTGGGATTGTGATGTAGGGAATGTCTGGTTCGTTTGATTTAACTCAGCGTTTTACCTCTATGAATTGATTCGGCTAGCGCTGTCACGAGCCCGGACGTCCCTTTAAGACTCCTAAATCTCCAAACAAACCCTTTAAAACTCCCTTCGCTGCTGCTCCGGACCAGATAACTGGATTTCTGAAAGCATCAGAGATTCGGCTTGATGAGATTTGTGGGAATTATTTGTGAGCCGGAGGGTGGTAATCTGAACACGGTCTCTCATTTTAtgctttgattaaaaaataataataataaaaggtttgtaaatatatatatatatatatgtactaaaAGACTGAAGATAACAGATGATGTTTCTTGGTTTTTAACCTCAATGCAAGTGTATTAATCTTTTCTGCTCTTAACTATTTCTATTTGGATTTTTGAAGAGAACAGAACTGTGAATTTAGTCTGAGAGAAGCATGAGATGTTAATGGGTGAATCCCACTGGACCAGTCGACACGCACAGGACATTTCTCACTACACTG
>TCONS_00055149
ATATGAATATTAAGTAGCAAGCCGTCAACATACTATCCTTAGTAATTTCGCACCCGGCCCACCACGCACGTATATATACCGGGGGAAAACGGCAGATTTTGACCGGGCTATGGATAGCGGAATCGAGAGAAAGCgttaaagagtcgaattcgctgGATTAAACGCGAAGGAATGATTTAAATTGGATTTAAAACCCAACGCATACCCGTAGGCTCGGTCCAGCGCGGTGCTGGTCCACATCTGACCGTCGGTGGTGACTCACGGAGATAGGGCCGTTAACGGAGTATTGCTGACCGGTCCGATATATATCTACAGATTTCAGCATGAAGTTTAAACCGAACCAGACGCGGACGTACGACCGGGAGGGATTCAAGCGGCGAGCGGCGTGTCTGTGCTTCAAAAACGACCGGGAGGATGAGGT

Function

symbol description
nudt4b Predicted to enable pyrophosphatase activity. Predicted to be involved in diphosphoinositol polyphosphate metabolic process and nucleotide catabolic process. Predicted to be active in cytoplasm and nucleus. Orthologous to human NUDT4 (nudix hydrolase 4).

GO:

id name namespace
GO:0071543 diphosphoinositol polyphosphate metabolic process biological_process
GO:1901907 diadenosine pentaphosphate catabolic process biological_process
GO:1901909 diadenosine hexaphosphate catabolic process biological_process
GO:1901911 adenosine 5'-(hexahydrogen pentaphosphate) catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000298 endopolyphosphatase activity molecular_function
GO:0034431 bis(5'-adenosyl)-hexaphosphatase activity molecular_function
GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity molecular_function
GO:0050072 m7G(5')pppN diphosphatase activity molecular_function
GO:0008486 diphosphoinositol-polyphosphate diphosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-79 Predicted to enable pyrophosphatase activity. Predicted to be involved in diphosphoinositol polyphosphate metabolic process and nucleotide catabolic process. Predicted to be active in cytoplasm and nucleus. Orthologous to human NUDT4 (nudix hydrolase 4).

Ensembl:

ensembl_id ENSDARG00000045878

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055148 False 1879 mRNA 0.43 5 1788748 1801519
TCONS_00055149 True 421 mRNA 0.50 1 1801199 1801619

Neighbor

gene id symbol gene type direction distance location
XLOC_028401 dnajc2 coding downstream 3628 1766333 ~ 1785120 (-)
XLOC_028400 tm7sf3 coding downstream 31288 1732825 ~ 1757460 (-)
XLOC_028399 gas2l3 coding downstream 68100 1689312 ~ 1720648 (-)
XLOC_028398 arid2 coding downstream 104401 1647098 ~ 1684347 (-)
XLOC_028397 zmp:0000000711 coding downstream 291364 1469106 ~ 1497384 (-)
XLOC_028403 ube2nb coding upstream 7943 1809562 ~ 1818315 (-)
XLOC_028404 mrpl42 coding upstream 20018 1821637 ~ 1824836 (-)
XLOC_028405 pwp1 coding upstream 24220 1825839 ~ 1839352 (-)
XLOC_028406 NA coding upstream 47041 1848660 ~ 1855771 (-)
XLOC_028407 ano6 coding upstream 76954 1878573 ~ 1914228 (-)
XLOC_028393 NA non-coding downstream 529007 1054661 ~ 1259741 (-)
XLOC_028394 NA non-coding downstream 554512 1223164 ~ 1234236 (-)
XLOC_028392 NA non-coding downstream 752702 1028836 ~ 1036046 (-)
XLOC_028391 NA non-coding downstream 765048 1022316 ~ 1023700 (-)
XLOC_028389 NA non-coding downstream 775653 1010960 ~ 1013095 (-)
XLOC_028408 NA non-coding upstream 114167 1915786 ~ 1979057 (-)
XLOC_028417 NA non-coding upstream 590453 2392072 ~ 2440175 (-)
XLOC_028418 NA non-coding upstream 644138 2445757 ~ 2479720 (-)
XLOC_028422 NA non-coding upstream 862549 2664168 ~ 2666870 (-)

Expression


Co-expression Network