Item | Value |
---|---|
gene id | XLOC_028403 |
gene name | ube2nb |
gene type | coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007115.7 |
NCBI id | CM002888.2 |
chromosome length | 78093715 |
location | 1809562 ~ 1818315 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
symbol | description |
---|---|
ube2nb | Predicted to enable ubiquitin binding activity and ubiquitin conjugating enzyme activity. Acts upstream of or within DNA damage response, detection of DNA damage. Predicted to be part of UBC13-MMS2 complex. Predicted to be active in nucleus. Orthologous to several human genes including UBE2N (ubiquitin conjugating enzyme E2 N). |
id | name | namespace |
---|---|---|
GO:0006301 | postreplication repair | biological_process |
GO:0045739 | positive regulation of DNA repair | biological_process |
GO:0051443 | positive regulation of ubiquitin-protein transferase activity | biological_process |
GO:0070534 | protein K63-linked ubiquitination | biological_process |
GO:0033182 | regulation of histone ubiquitination | biological_process |
GO:0042769 | DNA damage response, detection of DNA damage | biological_process |
GO:0031058 | positive regulation of histone modification | biological_process |
GO:0043123 | positive regulation of I-kappaB kinase/NF-kappaB signaling | biological_process |
GO:0016574 | histone ubiquitination | biological_process |
GO:0000209 | protein polyubiquitination | biological_process |
GO:0000724 | double-strand break repair via homologous recombination | biological_process |
GO:0000729 | DNA double-strand break processing | biological_process |
GO:0051092 | positive regulation of NF-kappaB transcription factor activity | biological_process |
GO:0050852 | T cell receptor signaling pathway | biological_process |
GO:0031372 | UBC13-MMS2 complex | cellular_component |
GO:0005634 | nucleus | cellular_component |
GO:0016740 | transferase activity | molecular_function |
GO:0005524 | ATP binding | molecular_function |
GO:0000166 | nucleotide binding | molecular_function |
GO:0043130 | ubiquitin binding | molecular_function |
GO:0061631 | ubiquitin conjugating enzyme activity | molecular_function |
id | description |
---|---|
ZDB-GENE-040426-1291 | Predicted to enable ubiquitin binding activity and ubiquitin conjugating enzyme activity. Acts upstream of or within DNA damage response, detection of DNA damage. Predicted to be part of UBC13-MMS2 complex. Predicted to be active in nucleus. Orthologous to several human genes including UBE2N (ubiquitin conjugating enzyme E2 N). |
ensembl_id | ENSDARG00000045877 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00055150 | True | 1288 | mRNA | 0.45 | 4 | 1809562 | 1818315 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_028402 | nudt4b | coding | downstream | 7943 | 1788748 ~ 1801619 (-) |
XLOC_028401 | dnajc2 | coding | downstream | 24442 | 1766333 ~ 1785120 (-) |
XLOC_028400 | tm7sf3 | coding | downstream | 52102 | 1732825 ~ 1757460 (-) |
XLOC_028399 | gas2l3 | coding | downstream | 88914 | 1689312 ~ 1720648 (-) |
XLOC_028398 | arid2 | coding | downstream | 125215 | 1647098 ~ 1684347 (-) |
XLOC_028404 | mrpl42 | coding | upstream | 3322 | 1821637 ~ 1824836 (-) |
XLOC_028405 | pwp1 | coding | upstream | 7524 | 1825839 ~ 1839352 (-) |
XLOC_028406 | NA | coding | upstream | 30345 | 1848660 ~ 1855771 (-) |
XLOC_028407 | ano6 | coding | upstream | 60258 | 1878573 ~ 1914228 (-) |
XLOC_028408 | NA | coding | upstream | 97471 | 1915786 ~ 1979057 (-) |
XLOC_028393 | NA | non-coding | downstream | 549821 | 1054661 ~ 1259741 (-) |
XLOC_028394 | NA | non-coding | downstream | 575326 | 1223164 ~ 1234236 (-) |
XLOC_028392 | NA | non-coding | downstream | 773516 | 1028836 ~ 1036046 (-) |
XLOC_028391 | NA | non-coding | downstream | 785862 | 1022316 ~ 1023700 (-) |
XLOC_028389 | NA | non-coding | downstream | 796467 | 1010960 ~ 1013095 (-) |
XLOC_028417 | NA | non-coding | upstream | 573757 | 2392072 ~ 2440175 (-) |
XLOC_028418 | NA | non-coding | upstream | 627442 | 2445757 ~ 2479720 (-) |
XLOC_028422 | NA | non-coding | upstream | 845853 | 2664168 ~ 2666870 (-) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
grasscarp (Ctenopharyngodon idella) | CI01000066_03686086_03690640 | UBE2NA, UBE2NB, UBE2N | coding | CI01000066 | null | 3685931 ~ 3691102 (+) |
tiger barb (Puntius tetrazona) | G49252 | ube2n,ube2nb,ube2na | non-coding | NC_056705.1 | CM032074.1 | 2063552 ~ 2066093 (+) |