XLOC_028409 (si:ch73-177h5.2)


Basic Information

Item Value
gene id XLOC_028409
gene name si:ch73-177h5.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1921011 ~ 1930024 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055157
GTGAGTGTAAATGATGGAAATATCTGTGACGTTCCTCCTCGCTGGATGTCTGATACAAGgTGTTTTATGTGGCTTCAGTATCAGTCTGCCAGAGAAAGTAGAAGCTCTAGAAGGATCCTGTGTTTTTATACCCTGCACATTCAATATTGATGAAGATTATAAAGATGATCTCACTGATACTGCAAAGAGATTATGGTATAAAGATGGAAAACCTGCAGTTTTGGTGTTTGACTCCAGCAGCCCTGACAGTGGACAGTTAAAAGGAGAAATATTTGGCAAAGCTACAGAGAAAAGGTGCAGCACTCGCTTCGATAATCTCAAACTAACAGACAGTGGCTCATATTACTTGAGATTAGAAGGCAGCGGTAGACTTCAATATAACTACATGAAACCCCAACACTCCTATGTTGAAATTGTGGTCAAAGcgtCTCCACCCAATCCCACAGTGCTTCTGTTTCAGGATCAGCAGGAGGTGATGGAGGTGACGGAGGGAAAATCAGTGACTCTGAGCTGCTTTAAGATCTTCTGTCCGTCTCTTCCATCATCTCTCACATGGAGCTCCAGTCCTGAACACCTCATCAATGCAAACATCCCAAAACTGCAGCATCAAAACCAAACACATTACTACTCTGACCTGATGTTCACTGTAACTCATCATCATCACAGAGCTGAATTCACCTGCACTGCAACACAGCAGCAGATCACAACACACAGCACCCGACAGCTACATGTTCAGTATGCTCCTAAAAGTGTCTCTGCTCATGTGAGTCCAGCTGGTGTGATTGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTCAAATACAGCTGGTACAAACACACTGAAGGAGACCTGAAACCCCCAACTGGACCAAACCTGACCATCATCAACATCAACCGTTCTCACAGTGGACGATACTACTGTAGAGCTGGAAACCAACACGGGACTCAGAACACATCAGTGCTGCTGGACGTCCAGTATCCTCCAGAAAAACCCTCTGTTCATAAATACGATGTGATTGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGCGAACTACAGCTGGTACAGACACACTGAAGGAGACCTTGAACCACTGACCGGACCAAACCTGACCATCAGCAACATCAACCGGTCTCACAGTGAACGATATTACTGTAAAGCTGAAAACCAACACGGGACTCAGAACACATCAGTGCTGCTGGACGTCCAGTTTCCACCCAAAATCTCTAGCTCTTGTAGCCAAAACGACAcactcatctgtgtctgtaaggTTGACGGGAATCCTCTGCCTAAACTACAGTGGCGTCTGTCTGGAAAAGTTCTCAATTCCACTGAAGAAATGCAGATAAGTGAGCAAACTATAGGAAACAAGAGCTTGGAGAGCATCCTGAGCATCCGTCAGTCTCTCTCAGACTCATCAGTCCTGCAGTGTTGGACTGCAAACGCTCACGGATCCGCCAGCCACCAGTTTCAGCACATCACAACAACACCACACACAGGTCTCCATCCTGCATATGTACTGCTGGGATTCGCTGTAGGAGCATCACTCGTCCTGATCTTCTGTGTTCTGACCGTCTGCAATGAACGAAAAAAGTCTAGAAAACTTTTAGAAAGCAGACGAGACGACGCATCTGAACTCATTCTGACTGAAAGGAAAACCTTGCTGTCGTCCACATTGATCACGTC

Function

symbol description
si:ch73-177h5.2 Predicted to enable sialic acid binding activity. Predicted to be involved in cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000020812

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055157 True 1728 mRNA 0.46 9 1921011 1930024

Neighbor

gene id symbol gene type direction distance location
XLOC_028407 ano6 coding downstream 6783 1878573 ~ 1914228 (-)
XLOC_028406 NA coding downstream 65240 1848660 ~ 1855771 (-)
XLOC_028405 pwp1 coding downstream 81659 1825839 ~ 1839352 (-)
XLOC_028404 mrpl42 coding downstream 96175 1821637 ~ 1824836 (-)
XLOC_028403 ube2nb coding downstream 102696 1809562 ~ 1818315 (-)
XLOC_028410 FAR2 coding upstream 58436 1988460 ~ 2036620 (-)
XLOC_028411 cpsf6 coding upstream 111043 2041067 ~ 2059302 (-)
XLOC_028412 kcnc2 coding upstream 130500 2060524 ~ 2196928 (-)
XLOC_028413 si:ch73-278m9.1 coding upstream 280293 2210317 ~ 2219705 (-)
XLOC_028414 krr1 coding upstream 328911 2258935 ~ 2265271 (-)
XLOC_028393 NA non-coding downstream 661270 1054661 ~ 1259741 (-)
XLOC_028394 NA non-coding downstream 686775 1223164 ~ 1234236 (-)
XLOC_028392 NA non-coding downstream 884965 1028836 ~ 1036046 (-)
XLOC_028391 NA non-coding downstream 897311 1022316 ~ 1023700 (-)
XLOC_028417 NA non-coding upstream 462048 2392072 ~ 2440175 (-)
XLOC_028418 NA non-coding upstream 515733 2445757 ~ 2479720 (-)
XLOC_028422 NA non-coding upstream 734144 2664168 ~ 2666870 (-)
XLOC_028427 NA non-coding upstream 1320750 3250774 ~ 3257564 (-)
XLOC_028428 NA non-coding upstream 1376121 3306145 ~ 3308415 (-)

Expression


Co-expression Network