LOC110535878 (LOC105014154)


Basic Information

Item Value
gene id LOC110535878
gene name LOC105014154
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 51129213 ~ 51135445 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621222.2
GCATTTCACCCATGCGCAACTAAAATGACGCCTCCGACCGGAAGATAGCTTCTGCGCCAACACGTTTTCGTTCTTTCTTTTCCTGTGGCAGCGTCGACGAACATGGGGAAGATCAAGGCTAGAGACCTGCGGGGCAAGAAAAAGGAGGAGCTGCTCAAGCAGCTGGATGACCTGAAGGTAGAGCTGTCCCAGCTCCGCGTAGCCAAGGTTACTGGTGGAGCTGCCTCCAAGCTCTCTAAAATttgtgtcgtccgcaaatcCATCGCCCGTGTTCTGACTGTCATCAACCAGACTCAGAAGGAGAACCTGAGGAAGTTCTACAAGGGTAAGAAATATAAGCCCTTGGACCTGAGACCCAGGAAGACTCGTGCCATCCGCAGGAGACTCAACAAGCATGAGGAGACTCTCCGAACAAAGAAGATGCAGAGAAAGGATCGCCTGTATTCCATTCGCAAATTTGCTGTCAAGGCTTAAGGTCGTTTGTCTTGTACAAATAAATTGACTAAAAAGAG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02918 RP-L35e, RPL35; large subunit ribosomal protein L35e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621222.2 True 512 mRNA 0.50 4 51129213 51135445

Neighbor

gene id symbol gene type direction distance location
LOC110535877 LOC106563505 coding downstream 26439 51102206 ~ 51102774 (-)
LOC110535871 LOC106579986 coding downstream 89572 50939912 ~ 51039641 (-)
ftz-f1 ftz-f1 coding downstream 198736 50901175 ~ 50930477 (-)
im:7150988 LOC106580008 coding downstream 561571 50565869 ~ 50567642 (-)
LOC110535859 tubb2b coding downstream 568697 50557700 ~ 50560516 (-)
LOC110535875 LOC106579981 coding upstream 189 51135634 ~ 51149582 (-)
LOC110535879 LOC102784428 coding upstream 14948 51150393 ~ 51156340 (-)
sh3glb2a LOC106579977 coding upstream 71440 51206885 ~ 51224122 (-)
LOC110535883 LOC106579975 coding upstream 88740 51224185 ~ 51245922 (-)
fam102aa LOC106579973 coding upstream 146218 51281663 ~ 51304505 (-)
G990407 LOC106579985 non-coding downstream 51016 51074437 ~ 51078197 (-)
G990429 NA non-coding downstream 56358 51071886 ~ 51072855 (-)
G990425 NA non-coding downstream 66267 51062702 ~ 51062946 (-)
G990305 NA non-coding downstream 113882 51014904 ~ 51015331 (-)
G990304 NA non-coding downstream 114392 51014620 ~ 51014821 (-)
G990492 NA non-coding upstream 55367 51190812 ~ 51191033 (-)
G990503 NA non-coding upstream 62683 51198128 ~ 51198335 (-)
G991031 NA non-coding upstream 133860 51269305 ~ 51269621 (-)
G991039 NA non-coding upstream 134894 51270339 ~ 51270572 (-)
G991041 NA non-coding upstream 137213 51272658 ~ 51272923 (-)
G990411 NA other downstream 84905 51040780 ~ 51044308 (-)
G989880 LOC106579995 other downstream 505108 50623430 ~ 50624105 (-)
G989343 NA other downstream 997040 50131329 ~ 50132173 (-)
G989341 NA other downstream 1007397 50120576 ~ 50121816 (-)
LOC110535846 LOC106580019 other downstream 1222961 49904325 ~ 49909935 (-)
LOC118937364 LOC106585457 other upstream 228805 51364250 ~ 51370212 (-)
specc1la specc1l other upstream 380101 51492045 ~ 51523279 (-)
G991349 NA other upstream 706621 51842066 ~ 51842522 (-)
ct030 LOC106579885 other upstream 3987065 55122507 ~ 55124484 (-)
adgra2 LOC106579839 other upstream 5554906 56690351 ~ 56787685 (-)

Expression


Co-expression Network