LOC110535879 (LOC102784428)


Basic Information

Item Value
gene id LOC110535879
gene name LOC102784428
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 51150393 ~ 51156340 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621223.2
TAGACTGAACCAAACATGTAGGCTAAGTAGGGTAGAATTTTTTTAGCGAACAGCTGATACAATGGCGCCACTGGACCTGGATAAATACGAGGAGATTGCCAAGCAGTGTAAATATTTACCTGAAAACGACCTCAAGAAGTTATGTGAATATGTATGTGACCTATTGCTAGAGGAATCCAATGTCCAACCTGTGTCCACCCCAGTGACAGTGTGTGGGGATATACACGGGCAGTTTTATGATCTGTGTGAACTCTTCAGAACCGGAGGACAGGTCCCAGACACAAACTATATTTTCATGGGTGATTTTGTTGACCGGGGATATTACAGCTTGGAGACGCTCACATACCTGCTGGTGTTAAAAGCGAAATGGCCTGACCGCATCACACTTTTAAGAGGAAACCACGAAAGCAGGCAGATAACCCAAGTGTATGGATTTTATGATGAATGCCAAACCAAATATGGAAATGCAAATGCCTGGCGCTACTGTACCAAAGTATTTGATATGTTAACAGTTGCAGCGCTGATGGATGAGCAGATTCTGTGTGTTCATGGGGGCCTCTCCCCGGACATAAAGACCCTGGACCAGATTAGAACCATTGAGCGTAACCAAGAGATCCCCCACAAGGGAGCATTCTGTGACCTTGTGTGGTCAGACCCCGAGGATGTGGACACCTGGGCCATCAGCCCCAGGGGAGCTGGGTGGCTGTTTGGTGCAAAGGTCACCAATGAGTTTGCTCACATCAACAACTTGAAGTTGATCTGTCGGGCACACCAGTTAGTCCATGAGGGTTACAAGTTTATGTTTGATGAGAAGCTGGTCACAGTCTGGTCAGCTCCTAACTACTGCTATCGCTGCGGCAACATTGCCTCCATCATGGTCTTCAAAGACGCCAATACGAGGGAGCCCAAGCTGTTCCGGGCAGTGCCCGACTCAGAGAGAGTCATTCCACCCAGAACAACGACACCATATTTCCTGTAAACACTGCACTAACGATCATCAGCTTCCACCGCACTGTTATCAAGCACCACATTTGTAATGCATCACATGCAGAGGATCGACAACAACTCTTGTTGAAGTGACACCACTGATTTTGTCATTCCTATTTTATTATAGTGTGTACGTTATATATGTACTGCATGTTTTTGTGTCTGTTGTAGCTCTGATTACCAATCCACATGCATTGACACAGAAGTACCATATCAAGTAATACCACTGTTTTAGGTGATAGCAGTGTCAATATTTTATGTTTTTTATCTAACGCATGGCATGTTAGATTAAATTCATTATGTTAGTTCACAATAAGAATACATTAAGTGAAACAGGATCACTTTTAGCCACTTTACAGGATGAAGTCAGTTTGTTTGACTTGTTTCAGTTTCAGTTTGACTTGGGTCTATTGCAACCTATTCAGCCTATAGAATATGTTATTTCTCAGGTGTttggttttatttttgtaatttcTATTTATTGAATTTTGTTTATCGTGTAGATATATATAAATCACTCAAATCAGAAACAGCACATATGAGCAATATTGTTTTTGTTCAGAAATATGTTTAATGAGAATTTATTAATGCACTTAGTTCTCTTGtaatgtagtattataataaagCTATAAGCCTGATAATTGAGGGAAGCACATCTTAAGATGAAGACCACTGATCTAAAGATGGGCAAGCCTATGAGAGCAGTAAGCCTAGCTGTGGTTACTTGTGTGAACTGACTGTGATACAGGATGAGTTAATATGGAAATTATCAAAATGAGAGATTCTGCTATTACTGTTAATCAGTAAATACAAGGAAA
>XM_021621224.2
TAGACTGAACCAAACATGTAGGCTAAGTAGGGTAGAATTTTTTTAGCGAACAGCTGATACAATGGCGCCACTGGACCTGGATAAATACGAGGAGATTGCCAAGCAGTGTAAATATTTACCTGAAAACGACCTCAAGTTATGTGAATATGTATGTGACCTATTGCTAGAGGAATCCAATGTCCAACCTGTGTCCACCCCAGTGACAGTGTGTGGGGATATACACGGGCAGTTTTATGATCTGTGTGAACTCTTCAGAACCGGAGGACAGGTCCCAGACACAAACTATATTTTCATGGGTGATTTTGTTGACCGGGGATATTACAGCTTGGAGACGCTCACATACCTGCTGGTGTTAAAAGCGAAATGGCCTGACCGCATCACACTTTTAAGAGGAAACCACGAAAGCAGGCAGATAACCCAAGTGTATGGATTTTATGATGAATGCCAAACCAAATATGGAAATGCAAATGCCTGGCGCTACTGTACCAAAGTATTTGATATGTTAACAGTTGCAGCGCTGATGGATGAGCAGATTCTGTGTGTTCATGGGGGCCTCTCCCCGGACATAAAGACCCTGGACCAGATTAGAACCATTGAGCGTAACCAAGAGATCCCCCACAAGGGAGCATTCTGTGACCTTGTGTGGTCAGACCCCGAGGATGTGGACACCTGGGCCATCAGCCCCAGGGGAGCTGGGTGGCTGTTTGGTGCAAAGGTCACCAATGAGTTTGCTCACATCAACAACTTGAAGTTGATCTGTCGGGCACACCAGTTAGTCCATGAGGGTTACAAGTTTATGTTTGATGAGAAGCTGGTCACAGTCTGGTCAGCTCCTAACTACTGCTATCGCTGCGGCAACATTGCCTCCATCATGGTCTTCAAAGACGCCAATACGAGGGAGCCCAAGCTGTTCCGGGCAGTGCCCGACTCAGAGAGAGTCATTCCACCCAGAACAACGACACCATATTTCCTGTAAACACTGCACTAACGATCATCAGCTTCCACCGCACTGTTATCAAGCACCACATTTGTAATGCATCACATGCAGAGGATCGACAACAACTCTTGTTGAAGTGACACCACTGATTTTGTCATTCCTATTTTATTATAGTGTGTACGTTATATATGTACTGCATGTTTTTGTGTCTGTTGTAGCTCTGATTACCAATCCACATGCATTGACACAGAAGTACCATATCAAGTAATACCACTGTTTTAGGTGATAGCAGTGTCAATATTTTATGTTTTTTATCTAACGCATGGCATGTTAGATTAAATTCATTATGTTAGTTCACAATAAGAATACATTAAGTGAAACAGGATCACTTTTAGCCACTTTACAGGATGAAGTCAGTTTGTTTGACTTGTTTCAGTTTCAGTTTGACTTGGGTCTATTGCAACCTATTCAGCCTATAGAATATGTTATTTCTCAGGTGTttggttttatttttgtaatttcTATTTATTGAATTTTGTTTATCGTGTAGATATATATAAATCACTCAAATCAGAAACAGCACATATGAGCAATATTGTTTTTGTTCAGAAATATGTTTAATGAGAATTTATTAATGCACTTAGTTCTCTTGtaatgtagtattataataaagCTATAAGCCTGATAATTGAGGGAAGCACATCTTAAGATGAAGACCACTGATCTAAAGATGGGCAAGCCTATGAGAGCAGTAAGCCTAGCTGTGGTTACTTGTGTGAACTGACTGTGATACAGGATGAGTTAATATGGAAATTATCAAAATGAGAGATTCTGCTATTACTGTTAATCAGTAAATACAAGGAAA

Function

NR:

description
serine/threonine-protein phosphatase 6 catalytic subunit-like isoform X2

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0007049 cell cycle biological_process
GO:0001878 response to yeast biological_process
GO:0005829 cytosol cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621223.2 False 1805 mRNA 0.41 7 51150393 51156340
XM_021621224.2 True 1802 mRNA 0.41 7 51150393 51156340

Neighbor

gene id symbol gene type direction distance location
LOC110535875 LOC106579981 coding downstream 811 51135634 ~ 51149582 (-)
LOC110535878 LOC105014154 coding downstream 14948 51129213 ~ 51135445 (-)
LOC110535877 LOC106563505 coding downstream 47619 51102206 ~ 51102774 (-)
LOC110535871 LOC106579986 coding downstream 110752 50939912 ~ 51039641 (-)
ftz-f1 ftz-f1 coding downstream 219916 50901175 ~ 50930477 (-)
sh3glb2a LOC106579977 coding upstream 50545 51206885 ~ 51224122 (-)
LOC110535883 LOC106579975 coding upstream 67845 51224185 ~ 51245922 (-)
fam102aa LOC106579973 coding upstream 125323 51281663 ~ 51304505 (-)
LOC118937364 LOC106585457 coding upstream 208416 51364250 ~ 51370212 (-)
mmp11a LOC106579968 coding upstream 254329 51410669 ~ 51423793 (-)
G990407 LOC106579985 non-coding downstream 72196 51074437 ~ 51078197 (-)
G990429 NA non-coding downstream 77538 51071886 ~ 51072855 (-)
G990425 NA non-coding downstream 87447 51062702 ~ 51062946 (-)
G990305 NA non-coding downstream 135062 51014904 ~ 51015331 (-)
G990304 NA non-coding downstream 135572 51014620 ~ 51014821 (-)
G990492 NA non-coding upstream 34472 51190812 ~ 51191033 (-)
G990503 NA non-coding upstream 41788 51198128 ~ 51198335 (-)
G991031 NA non-coding upstream 112965 51269305 ~ 51269621 (-)
G991039 NA non-coding upstream 113999 51270339 ~ 51270572 (-)
G991041 NA non-coding upstream 116318 51272658 ~ 51272923 (-)
G990411 NA other downstream 106085 51040780 ~ 51044308 (-)
G989880 LOC106579995 other downstream 526288 50623430 ~ 50624105 (-)
G989343 NA other downstream 1018220 50131329 ~ 50132173 (-)
G989341 NA other downstream 1028577 50120576 ~ 50121816 (-)
LOC110535846 LOC106580019 other downstream 1244141 49904325 ~ 49909935 (-)
specc1la specc1l other upstream 359206 51492045 ~ 51523279 (-)
G991349 NA other upstream 685726 51842066 ~ 51842522 (-)
ct030 LOC106579885 other upstream 3966170 55122507 ~ 55124484 (-)
adgra2 LOC106579839 other upstream 5534011 56690351 ~ 56787685 (-)

Expression


Co-expression Network