LOC110535883 (LOC106579975)


Basic Information

Item Value
gene id LOC110535883
gene name LOC106579975
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 51224185 ~ 51245922 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621229.2
ATACAGCCCAGGTGTAACACACCCTGAATATATTGCCCAACCCGCTTACCATGGTATGCGGCACTTGGCCTACTCTTGGCTGAAAAAGGAGGCCGACCGCTGTCatgaaaatgtgtttgtttttaatCTTTACGGTCCAAAATGCTATCCACATGCATATGAAAATGGTAAAAGCATAGGCTTAAAATATATCTCCAATGATTTTCACTGAATCCAGATACTTCCCTTGTACAGCAAGGCATCAAAGCATAAAGGACAACACGAGGAAAGTAGGCTGGTAAAGATGGATAAGAGGAGCGGTCTGCGCCTGTGTCACTTTGGGACAGCCAGGCGAAGGCGATGGTGGGGTCTGAGGAGAAGATGGATTTACATTtacatcacatttacatttacatggAGGATGCTAGGGGTGTTTAAGACCAACCAGGAACATGACTTATACAGCCTCACCTGTCTTATGAAAGAGGGCCTGCATGCTGTCCTACAGACCagcaacaacacaacagtacctGATAAACTTTCTGCTGAACATTACAAATCGGCGGAGACTCAAGTCCACAAGGACTTGGAGATGCAGACATTTGCAGGGCCTGTGTTTGCCGGCCTGCGGCGGTCCCTGGATATAACAGAGGAGGAGTACCAGAGGTCCCTCTCTTCAGAGGGCTGCTATCTACAGTTCATCAGCAACTCCAAGAGCAAGGCTGACTTCTTCCTCACGAATGACAAGAGGTTCTTCCTAAAGACACAGAATACGCGGGAGGTTATGTTTTTCCTATCCAACCTGAAGGCATATATGGATCATTTGGAGAAATACCCCCACTCCCTGATGGTCAGGTTCCTGGGGCTCTATAGCATTCAAATTCCAAATAAAACAAAGaAGTATTTCATTGTGATGCAGAATGTGTTTTACCCGGACGAGAGGATTAATACCAGATATGACATCAAGGGATGTGAGGTGGGTAGGTGGACTGACCCTGCATCTATGGGAAACCCAGTTACTAAGATTCTGAAGGATAACAACTTTGAAGGAAAGCACATCATTCTGGATAAGCAGCGCTCCTGGCTTGTGGATCAGGTTGAAATAGACTCGGCCTTCCTCCGTAGCCTCAATGTGCTTGACTACAGTATCCTGCTGGCCCATCAACCCTTGCACCAAGATGAGCTGGACAGGAAGCACTCCTTTAGTAACCTGACTATGCACACTGTAAAGTCCATGGACCAAGACAGTCCTGCAGAGGAAGATCCCCCCACTATTCCGTTGTTGGAGGGGTACTCTGCTCGACTGGCATCAGATACAATAGACAGTGGGTCAGACCACATCCAGAATACAGGGGAACACTCTGGCCGTGGAATCCCCCTCCAGGAGATAAACCTACACTCCGTAAACTGTACAGAAGCAGAACTCCTGGAGTTCCAAGCTCATCACCGTAGGCTGCTGCCTAATTTAAAAAACTCTGTGCATGTCATAGACGGACCAAAGCTGCGCTACTTTGTGGGTATTGTAGACTTTTTCACTGTGTACGGTGTGAAGAAAAGGCAGGAGAACCTGTGGAAGAGTCTGCGCTTCCCTGGCAGAGCCTTCTCCACTGTCAGCCCAGCTACCTACTCCCAGAGGTTCTGCCAGTGGGTGAAGGACCACACCAAGTAAAACAGGGACACTGAAGCCCATTGAAAGACACAGAAGAGACTGTCCAAGTGAATAATCAAACTTGTTTTGTGAACAGCATGAACAGTAGGTGGCACCAAATAGCTTCTGTTGCAGTGGTAGcctattatttatatatatatatatatatatttctagagGAATTTTACATTAGTGATATTTCCCCCAAACAATTATGTGACAGGTTCCTCAAAAATCATGTATGAATGTGTATAAAATGTATTGGAATAAGTCGTGACTAGAGAATCAATAATAAAAACCTGTCACTGCGTAAGAAA
>XM_021621230.2
AAATACAGCCCAGGTGTAACACACCCTGAATATATTGCCCAACCCGCTTACCATGGTATGCGGCACTTGGCCTACTCTTGGCTGAAAAAGGAGGCCGACCGCTGTCatgaaaatgtgtttgtttttaatCTTTACGGTCCAAAATGCTATCCACATGCATATGAAAATGGTAAAAGCATAGGCTTAAAATATATCTCCAATGATTTTCACTGAATCCAGATACTTCCCTTGTACAGCAAGGCATCAAAGCATAAAGGACAACACGAGGAAAGTAGGCTGGTAAAGATGGATAAGAGGAGCGGTCTGCGCCTGTGTCACTTTGGGACAGCCAGGCGAAGGCGATGGTGGGGTCTGAGGAGAAGATGGATTTACATTtacatcacatttacatttacatggAGGATGCTAGGGGTGTTTAAGACCAACCAGGAACATGACTTATACAGCCTCACCTGTCTTATGAAAGAGGGCCTGCATGCTGTCCTACAGACCagcaacaacacaacagtacctGATAAACTTTCTGCTGAACATTACAAATCGGCGGAGACTCAAGTCCACAAGGACTTGGAGATGCAGACATTTGCAGGGCCTGTGTTTGCCGGCCTGCGGCGGTCCCTGGATATAACAGAGGAGGAGTACCAGAGGTCCCTCTCTTCAGAGGGCTGCTATCTACAGTTCATCAGCAACTCCAAGAGCAAGGCTGACTTCTTCCTCACGAATGACAAGAGGTTCTTCCTAAAGACACAGAATACGCGGGAGGTTATGTTTTTCCTATCCAACCTGAAGGCATATATGGATCATTTGGAGAAATACCCCCACTCCCTGATGGTCAGGTTCCTGGGGCTCTATAGCATTCAAATTCCAAATAAAACAAAGTATTTCATTGTGATGCAGAATGTGTTTTACCCGGACGAGAGGATTAATACCAGATATGACATCAAGGGATGTGAGGTGGGTAGGTGGACTGACCCTGCATCTATGGGAAACCCAGTTACTAAGATTCTGAAGGATAACAACTTTGAAGGAAAGCACATCATTCTGGATAAGCAGCGCTCCTGGCTTGTGGATCAGGTTGAAATAGACTCGGCCTTCCTCCGTAGCCTCAATGTGCTTGACTACAGTATCCTGCTGGCCCATCAACCCTTGCACCAAGATGAGCTGGACAGGAAGCACTCCTTTAGTAACCTGACTATGCACACTGTAAAGTCCATGGACCAAGACAGTCCTGCAGAGGAAGATCCCCCCACTATTCCGTTGTTGGAGGGGTACTCTGCTCGACTGGCATCAGATACAATAGACAGTGGGTCAGACCACATCCAGAATACAGGGGAACACTCTGGCCGTGGAATCCCCCTCCAGGAGATAAACCTACACTCCGTAAACTGTACAGAAGCAGAACTCCTGGAGTTCCAAGCTCATCACCGTAGGCTGCTGCCTAATTTAAAAAACTCTGTGCATGTCATAGACGGACCAAAGCTGCGCTACTTTGTGGGTATTGTAGACTTTTTCACTGTGTACGGTGTGAAGAAAAGGCAGGAGAACCTGTGGAAGAGTCTGCGCTTCCCTGGCAGAGCCTTCTCCACTGTCAGCCCAGCTACCTACTCCCAGAGGTTCTGCCAGTGGGTGAAGGACCACACCAAGTAAAACAGGGACACTGAAGCCCATTGAAAGACACAGAAGAGACTGTCCAAGTGAATAATCAAACTTGTTTTGTGAACAGCATGAACAGTAGGTGGCACCAAATAGCTTCTGTTGCAGTGGTAGcctattatttatatatatatatatatatatttctagagGAATTTTACATTAGTGATATTTCCCCCAAACAATTATGTGACAGGTTCCTCAAAAATCATGTATGAATGTGTATAAAATGTATTGGAATAAGTCGTGACTAGAGAATCAATAATAAAAACCTGTCACTGCGTAAGAAA
>XM_036935706.1
TACAGTTCCGTTCGCTTTTGTTGGCTGTTTGGTTTCCAGCTAGTAAATACAGCCCAGGTGTAACACACCCTGAATATATTGCCCAACCCGCTTACCATGGTATGCGGCACTTGGCCTACTCTTGGCTGAAAAAGGAGGCCGACCGCTGTCatgaaaatgtgtttgtttttaatCTTTACGGTCCAAAATGCTATCCACATGCATATGAAAATGGTAAAAGCATAGGCTTAAAATATATCTCCAATGATTTTCACTGAATCCAGATACTTCCCTTGTACAGCAAGGCATCAAAGCATAAAGGACAACACGAGGAAAGTAGGCTGGTAAAGGATAAACTTTCTGCTGAACATTACAAATCGGCGGAGACTCAAGTCCACAAGGACTTGGAGATGCAGACATTTGCAGGGCCTGTGTTTGCCGGCCTGCGGCGGTCCCTGGATATAACAGAGGAGGAGTACCAGAGGTCCCTCTCTTCAGAGGGCTGCTATCTACAGTTCATCAGCAACTCCAAGAGCAAGGCTGACTTCTTCCTCACGAATGACAAGAGGTTCTTCCTAAAGACACAGAATACGCGGGAGGTTATGTTTTTCCTATCCAACCTGAAGGCATATATGGATCATTTGGAGAAATACCCCCACTCCCTGATGGTCAGGTTCCTGGGGCTCTATAGCATTCAAATTCCAAATAAAACAAAGaAGTATTTCATTGTGATGCAGAATGTGTTTTACCCGGACGAGAGGATTAATACCAGATATGACATCAAGGGATGTGAGGTGGGTAGGTGGACTGACCCTGCATCTATGGGAAACCCAGTTACTAAGATTCTGAAGGATAACAACTTTGAAGGAAAGCACATCATTCTGGATAAGCAGCGCTCCTGGCTTGTGGATCAGGTTGAAATAGACTCGGCCTTCCTCCGTAGCCTCAATGTGCTTGACTACAGTATCCTGCTGGCCCATCAACCCTTGCACCAAGATGAGCTGGACAGGAAGCACTCCTTTAGTAACCTGACTATGCACACTGTAAAGTCCATGGACCAAGACAGTCCTGCAGAGGAAGATCCCCCCACTATTCCGTTGTTGGAGGGGTACTCTGCTCGACTGGCATCAGATACAATAGACAGTGGGTCAGACCACATCCAGAATACAGGGGAACACTCTGGCCGTGGAATCCCCCTCCAGGAGATAAACCTACACTCCGTAAACTGTACAGAAGCAGAACTCCTGGAGTTCCAAGCTCATCACCGTAGGCTGCTGCCTAATTTAAAAAACTCTGTGCATGTCATAGACGGACCAAAGCTGCGCTACTTTGTGGGTATTGTAGACTTTTTCACTGTGTACGGTGTGAAGAAAAGGCAGGAGAACCTGTGGAAGAGTCTGCGCTTCCCTGGCAGAGCCTTCTCCACTGTCAGCCCAGCTACCTACTCCCAGAGGTTCTGCCAGTGGGTGAAGGACCACACCAAGTAAAACAGGGACACTGAAGCCCATTGAAAGACACAGAAGAGACTGTCCAAGTGAATAATCAAACTTGTTTTGTGAACAGCATGAACAGTAGGTGGCACCAAATAGCTTCTGTTGCAGTGGTAGcctattatttatatatatatatatatatatttctagagGAATTTTACATTAGTGATATTTCCCCCAAACAATTATGTGACAGGTTCCTCAAAAATCATGTATGAATGTGTATAAAATGTATTGGAATAAGTCGTGACTAGAGAATCAATAATAAAAACCTGTCACTGCGTAAGAAA
>XM_036935707.1
cacaacactggaactcttccaagtcaagGACTTGGAGATGCAGACATTTGCAGGGCCTGTGTTTGCCGGCCTGCGGCGGTCCCTGGATATAACAGAGGAGGAGTACCAGAGGTCCCTCTCTTCAGAGGGCTGCTATCTACAGTTCATCAGCAACTCCAAGAGCAAGGCTGACTTCTTCCTCACGAATGACAAGAGGTTCTTCCTAAAGACACAGAATACGCGGGAGGTTATGTTTTTCCTATCCAACCTGAAGGCATATATGGATCATTTGGAGAAATACCCCCACTCCCTGATGGTCAGGTTCCTGGGGCTCTATAGCATTCAAATTCCAAATAAAACAAAGaAGTATTTCATTGTGATGCAGAATGTGTTTTACCCGGACGAGAGGATTAATACCAGATATGACATCAAGGGATGTGAGGTGGGTAGGTGGACTGACCCTGCATCTATGGGAAACCCAGTTACTAAGATTCTGAAGGATAACAACTTTGAAGGAAAGCACATCATTCTGGATAAGCAGCGCTCCTGGCTTGTGGATCAGGTTGAAATAGACTCGGCCTTCCTCCGTAGCCTCAATGTGCTTGACTACAGTATCCTGCTGGCCCATCAACCCTTGCACCAAGATGAGCTGGACAGGAAGCACTCCTTTAGTAACCTGACTATGCACACTGTAAAGTCCATGGACCAAGACAGTCCTGCAGAGGAAGATCCCCCCACTATTCCGTTGTTGGAGGGGTACTCTGCTCGACTGGCATCAGATACAATAGACAGTGGGTCAGACCACATCCAGAATACAGGGGAACACTCTGGCCGTGGAATCCCCCTCCAGGAGATAAACCTACACTCCGTAAACTGTACAGAAGCAGAACTCCTGGAGTTCCAAGCTCATCACCGTAGGCTGCTGCCTAATTTAAAAAACTCTGTGCATGTCATAGACGGACCAAAGCTGCGCTACTTTGTGGGTATTGTAGACTTTTTCACTGTGTACGGTGTGAAGAAAAGGCAGGAGAACCTGTGGAAGAGTCTGCGCTTCCCTGGCAGAGCCTTCTCCACTGTCAGCCCAGCTACCTACTCCCAGAGGTTCTGCCAGTGGGTGAAGGACCACACCAAGTAAAACAGGGACACTGAAGCCCATTGAAAGACACAGAAGAGACTGTCCAAGTGAATAATCAAACTTGTTTTGTGAACAGCATGAACAGTAGGTGGCACCAAATAGCTTCTGTTGCAGTGGTAGcctattatttatatatatatatatatatatttctagagGAATTTTACATTAGTGATATTTCCCCCAAACAATTATGTGACAGGTTCCTCAAAAATCATGTATGAATGTGTATAAAATGTATTGGAATAAGTCGTGACTAGAGAATCAATAATAAAAACCTGTCACTGCGTAAGAAA

Function

NR:

description
phosphatidylinositol 4-phosphate 5-kinase-like protein 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621229.2 False 1944 mRNA 0.46 10 51224185 51228223
XM_021621230.2 False 1943 mRNA 0.46 10 51224185 51228225
XM_036935706.1 False 1762 mRNA 0.45 9 51224185 51228269
XM_036935707.1 True 1410 mRNA 0.46 8 51224185 51245922

Neighbor

gene id symbol gene type direction distance location
sh3glb2a LOC106579977 coding downstream 63 51206885 ~ 51224122 (-)
LOC110535879 LOC102784428 coding downstream 67845 51150393 ~ 51156340 (-)
LOC110535875 LOC106579981 coding downstream 74603 51135634 ~ 51149582 (-)
LOC110535878 LOC105014154 coding downstream 88740 51129213 ~ 51135445 (-)
LOC110535877 LOC106563505 coding downstream 121411 51102206 ~ 51102774 (-)
fam102aa LOC106579973 coding upstream 35741 51281663 ~ 51304505 (-)
LOC118937364 LOC106585457 coding upstream 118834 51364250 ~ 51370212 (-)
mmp11a LOC106579968 coding upstream 164747 51410669 ~ 51423793 (-)
LOC110535893 NA coding upstream 183558 51429480 ~ 51434945 (-)
upb1 bup1 coding upstream 214516 51460438 ~ 51471151 (-)
G990503 NA non-coding downstream 25850 51198128 ~ 51198335 (-)
G990492 NA non-coding downstream 33152 51190812 ~ 51191033 (-)
G990407 LOC106579985 non-coding downstream 145988 51074437 ~ 51078197 (-)
G990429 NA non-coding downstream 151330 51071886 ~ 51072855 (-)
G990425 NA non-coding downstream 161239 51062702 ~ 51062946 (-)
G991031 NA non-coding upstream 23383 51269305 ~ 51269621 (-)
G991039 NA non-coding upstream 24417 51270339 ~ 51270572 (-)
G991041 NA non-coding upstream 26736 51272658 ~ 51272923 (-)
G991042 NA non-coding upstream 27491 51273413 ~ 51273658 (-)
G991043 NA non-coding upstream 28389 51274311 ~ 51274956 (-)
G990411 NA other downstream 179877 51040780 ~ 51044308 (-)
G989880 LOC106579995 other downstream 600080 50623430 ~ 50624105 (-)
G989343 NA other downstream 1092012 50131329 ~ 50132173 (-)
G989341 NA other downstream 1102369 50120576 ~ 50121816 (-)
LOC110535846 LOC106580019 other downstream 1317933 49904325 ~ 49909935 (-)
specc1la specc1l other upstream 269624 51492045 ~ 51523279 (-)
G991349 NA other upstream 596144 51842066 ~ 51842522 (-)
ct030 LOC106579885 other upstream 3876588 55122507 ~ 55124484 (-)
adgra2 LOC106579839 other upstream 5444429 56690351 ~ 56787685 (-)

Expression


Co-expression Network