mmp11a (LOC106579968)


Basic Information

Item Value
gene id mmp11a
gene name LOC106579968
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 51410669 ~ 51423793 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935714.1
CCATTAGTTCTGTCCTCTGGCCAAATTGACTGCTAGACACTGTGAGCCAGAGAGATTACTAGCCTCAGTTAAATAGCATCCACTTGTTGAATTAGGCTACAGCAGCTCCACATCACTGGAAGGCTCCAATGAAATGACAAGTTAGAACGCTTTGAAAAGCCCTCCCTCTTGAAAGGTGATTGGTTTCTGTAAACCATCTGCAAAACAGAGGAGGGTTCCTGAGGACCATGAGAAAATGAATACGATCAGTTCATGCAAGGTGAGAGTCGCATCATCCCCTTGATTCTCAGCTCAGCACGAGGAAGTTTGTTTGCCAGGAAAGATAAGCGAGCACAGGATGGCTCCAGAGATCTGATCTCCATAACctgaagaagagaggaagagccCATCCTCAGGACACACTCAAAGACACAGCCTTGACCAGAGGAGACCCTATAAGAGCAGCCCTGGTAACTAACAGCACTGAGGTGTCTAACCGCCCCCGCTGTGGTGTCCCTGACTACCCCATGCTGAAAGATGTCCTCTACAGGGGGAAACACAGGCAGAAACGCTTTGTCCTGTTCGGGGGGCGCTTGGAGAAGACTGACCTCACCTACAAAGTGGTTCGCTTCCCCTGGCAGATGAGTGAGGACAAGGTGCGGCGTGTCCTGCAGGAAGCACTGAGAGTGTGGAGTGAGGTCACACCCCTCACCTTCACTGAGGTCAGCAGTGGAAAGGCTGACATTGTCATCGACTTCACCAGGTACTGGCATGGAGATAACCTGCCCTTTGACGGGCCTGGGGGCATTCTAGCCCATGCCTTCTTCCCCCAGACCCACAGGGAGGGCGACATCCATTTTGACTATGATGAAGCATGGACCCTTGGCAACTACATGGGCACAGACCTCCTCCAAGTGGCTGCTCATGAGTTTGGGCATGTTCTGGGCCTGCAGCACTCCCGGGAACCGGGTGCAGTGATGTCCCCTTATTACAGCTTCTCCTATCCCCTGGAGCTGAGCGAGGATGACAAGCTGGGGATCCAATACCTGTACGGTCATCGTCCACATATCCCGCCTCCACCTCCACTATCACCACCGCCacaaatcaccacagagaccaatgAGATCATTAGTAGTATTCCTGACGTCTGCCAGACAGACTTTGATGCTGTGTCTATGATCCGCGGGGAGCTGTTTTTCTTTAAATCAAGCTATGTGTGGCGCATTCGGGAGGGGCGGCTGGAGGCGGGCTACCCCGCGCTGGCGTCCCGCCATTGGAGGGGGATTCCAGAGAGCATTGATGCTGCCTTTGAAGACCAATCAGGGAGTATCTGGTTCTTTCAAGgtcAAAGCTACTGGGTGTTTGATGCAGAGAGACAGATCACAGGGCCAGAACCTGTGCGGAGGCTCGGCCTGTCAGTCTCCCACATCCAGGCAGCCCTGCTCTGGGGCCAGGACAGCAGTTACAACACCTACTTCTTCAAGTCAGGCAGCTACTGGAGGTTCAGCCCCAAGGAGAACCGCGTCCACTCTGTCTACCCTCGCAACATGCAGGACTGGAGCGGCATCCCCAGTGATGTAGACGCAGCCTTCAAGGACCAATACGGCTATGCCCACTTTATCCGAGGGAGGCAGTACTGGAAGTTTGATCCTGTGGAGATGAATTTACTACAGGGGTATCCTCGCTATATTGGAATGGACTTCTTTGGCTGCCTAAATGCATGAATCATCAGTATTAAGTGATGCCGCTGTCTCAAGATCAAACCCAAGTCCAGGTTTAGTCCAACTATGCTCTCGTACTGATGGTCTTCAAATACAACATTGTAATGTTGTGCATTTTTTGGGGGAACAAGACCATTGCACCTACAGAGGCATTTTCATCTTCTTCCAAATGTTGAAGAAACAAACTATTTAGAAAGAGACTTTTATTTCTTTTACTTGAGTGAGTTCCAAAAAATGTGTGTTCTTCctcaaatgtgtttttgtttaatCATGACCTTAACACTTTGAACGGACTAGATCCTTTTTTTCTTCTCAGGGAAACACAAATTCAAATGTTTCCTCAGAGTTTGGACTTCATGTGCAGCTATGTACTTGGATTTATTTGTTACTGGGTTCGGTTCTATGGTCAGAAGTTGCGATGTTCAAGACCATGGGCTGACAGTACAGTGCCATCTACAGTCCAGTACCAACCAATTTTTAGGAGGTTCTTTTTTAACTATATTATGATGTAGAATTTACTCCAGAGATGTTGCAGCATAAACATGTTTGCTTTATTCTTAAAAGGGAAATATGTCTAAAGCACTGCAATTAAGGTGCTAAATCTGTTAATCACTGACAATCAGGGACACCTTTTGTTCTCAAATGTTATGAACACTTTACTCACAGTCTTATATGAATGACATCAAGTACATTATCTCATCACATTTCATTTCTCTCTAAGATGAATATACTTCATTCAATAATGTTCCATCCATGGTGCTCTCAGTCAGTGCAAAGGGATGGGGTGAACTTGGTGCTGCATTATGTGAATGTAAGCCATGAGGATAAGTTACTTTTTGGATGACTGCAGTTTGTCAGTGCAGGACACTGATATATCTGCTTTACTGTAAAATACACTACCGGTCTAAAGTTTTAGaactcctactcattcaagggtttttatttatttagactattttcttcactgtagaataatagtgaagacatcaaaaccatgaaatagcacatactgtatggaatcatgtagtaaccaaaaaag
>XM_021621250.2
TAAAACTTGTATTTGAAGTAAGAGAACAAAGAATCAGAACCTATATAAGAGTCCCCAAGACGCTGCGCAGTCACTCTTTGGCattagagagagcagagaagattACTGCCGGTGCACTCTGCGTCCACGGGTCCAGAagaagaagatgatgatgatgctgactTCTATCCTTCTACCCTGCGTCTTTACGCTGCAATGCCTCCGAAGCATGCATTGTTCGCCAGTGCCAGAAGGAAGCAGGTACCAAGCGGCGCCGGGATGGCTCCAGAGATCTGATCTCCATAACctgaagaagagaggaagagccCATCCTCAGGACACACTCAAAGACACAGCCTTGACCAGAGGAGACCCTATAAGAGCAGCCCTGGTAACTAACAGCACTGAGGTGTCTAACCGCCCCCGCTGTGGTGTCCCTGACTACCCCATGCTGAAAGATGTCCTCTACAGGGGGAAACACAGGCAGAAACGCTTTGTCCTGTTCGGGGGGCGCTTGGAGAAGACTGACCTCACCTACAAAGTGGTTCGCTTCCCCTGGCAGATGAGTGAGGACAAGGTGCGGCGTGTCCTGCAGGAAGCACTGAGAGTGTGGAGTGAGGTCACACCCCTCACCTTCACTGAGGTCAGCAGTGGAAAGGCTGACATTGTCATCGACTTCACCAGGTACTGGCATGGAGATAACCTGCCCTTTGACGGGCCTGGGGGCATTCTAGCCCATGCCTTCTTCCCCCAGACCCACAGGGAGGGCGACATCCATTTTGACTATGATGAAGCATGGACCCTTGGCAACTACATGGGCACAGACCTCCTCCAAGTGGCTGCTCATGAGTTTGGGCATGTTCTGGGCCTGCAGCACTCCCGGGAACCGGGTGCAGTGATGTCCCCTTATTACAGCTTCTCCTATCCCCTGGAGCTGAGCGAGGATGACAAGCTGGGGATCCAATACCTGTACGGTCATCGTCCACATATCCCGCCTCCACCTCCACTATCACCACCGCCacaaatcaccacagagaccaatgAGATCATTAGTAGTATTCCTGACGTCTGCCAGACAGACTTTGATGCTGTGTCTATGATCCGCGGGGAGCTGTTTTTCTTTAAATCAAGCTATGTGTGGCGCATTCGGGAGGGGCGGCTGGAGGCGGGCTACCCCGCGCTGGCGTCCCGCCATTGGAGGGGGATTCCAGAGAGCATTGATGCTGCCTTTGAAGACCAATCAGGGAGTATCTGGTTCTTTCAAGgtcAAAGCTACTGGGTGTTTGATGCAGAGAGACAGATCACAGGGCCAGAACCTGTGCGGAGGCTCGGCCTGTCAGTCTCCCACATCCAGGCAGCCCTGCTCTGGGGCCAGGACAGCAGTTACAACACCTACTTCTTCAAGTCAGGCAGCTACTGGAGGTTCAGCCCCAAGGAGAACCGCGTCCACTCTGTCTACCCTCGCAACATGCAGGACTGGAGCGGCATCCCCAGTGATGTAGACGCAGCCTTCAAGGACCAATACGGCTATGCCCACTTTATCCGAGGGAGGCAGTACTGGAAGTTTGATCCTGTGGAGATGAATTTACTACAGGGGTATCCTCGCTATATTGGAATGGACTTCTTTGGCTGCCTAAATGCATGAATCATCAGTATTAAGTGATGCCGCTGTCTCAAGATCAAACCCAAGTCCAGGTTTAGTCCAACTATGCTCTCGTACTGATGGTCTTCAAATACAACATTGTAATGTTGTGCATTTTTTGGGGGAACAAGACCATTGCACCTACAGAGGCATTTTCATCTTCTTCCAAATGTTGAAGAAACAAACTATTTAGAAAGAGACTTTTATTTCTTTTACTTGAGTGAGTTCCAAAAAATGTGTGTTCTTCctcaaatgtgtttttgtttaatCATGACCTTAACACTTTGAACGGACTAGATCCTTTTTTTCTTCTCAGGGAAACACAAATTCAAATGTTTCCTCAGAGTTTGGACTTCATGTGCAGCTATGTACTTGGATTTATTTGTTACTGGGTTCGGTTCTATGGTCAGAAGTTGCGATGTTCAAGACCATGGGCTGACAGTACAGTGCCATCTACAGTCCAGTACCAACCAATTTTTAGGAGGTTCTTTTTTAACTATATTATGATGTAGAATTTACTCCAGAGATGTTGCAGCATAAACATGTTTGCTTTATTCTTAAAAGGGAAATATGTCTAAAGCACTGCAATTAAGGTGCTAAATCTGTTAATCACTGACAATCAGGGACACCTTTTGTTCTCAAATGTTATGAACACTTTACTCACAGTCTTATATGAATGACATCAAGTACATTATCTCATCACATTTCATTTCTCTCTAAGATGAATATACTTCATTCAATAATGTTCCATCCATGGTGCTCTCAGTCAGTGCAAAGGGATGGGGTGAACTTGGTGCTGCATTATGTGAATGTAAGCCATGAGGATAAGTTACTTTTTGGATGACTGCAGTTTGTCAGTGCAGGACACTGATATATCTGCTTTACTGTAAAATACACTACCGGTCTAAAGTTTTAGaactcctactcattcaagggtttttatttatttagactattttcttcactgtagaataatagtgaagacatcaaaaccatgaaatagcacatactgtatggaatcatgtagtaaccaaaaaag

Function

NR:

description
stromelysin-3-like

GO: NA

KEGG:

id description
K07993 MMP11; matrix metalloproteinase-11 (stromelysin 3)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935714.1 False 2739 mRNA 0.47 8 51410669 51422136
XM_021621250.2 True 2660 mRNA 0.47 8 51410669 51423793

Neighbor

gene id symbol gene type direction distance location
LOC118937364 LOC106585457 coding downstream 40457 51364250 ~ 51370212 (-)
fam102aa LOC106579973 coding downstream 106164 51281663 ~ 51304505 (-)
LOC110535883 LOC106579975 coding downstream 164747 51224185 ~ 51245922 (-)
sh3glb2a LOC106579977 coding downstream 186547 51206885 ~ 51224122 (-)
LOC110535879 LOC102784428 coding downstream 254329 51150393 ~ 51156340 (-)
LOC110535893 NA coding upstream 5687 51429480 ~ 51434945 (-)
upb1 bup1 coding upstream 36645 51460438 ~ 51471151 (-)
LOC110535896 LOC106579963 coding upstream 50748 51474541 ~ 51481565 (-)
adora2aa adora2a coding upstream 58389 51482182 ~ 51489995 (-)
specc1la specc1l coding upstream 68252 51492045 ~ 51523279 (-)
G991108 NA non-coding downstream 253 51410136 ~ 51410416 (-)
G991099 LOC106579966 non-coding downstream 12559 51396105 ~ 51398110 (-)
G991025 LOC106579971 non-coding downstream 58532 51348508 ~ 51352137 (-)
G991069 NA non-coding downstream 90437 51316762 ~ 51320232 (-)
G991118 NA non-coding upstream 3421 51427214 ~ 51427564 (-)
G991150 NA non-coding upstream 31304 51455097 ~ 51455537 (-)
G991205 NA non-coding upstream 168890 51592683 ~ 51597596 (-)
G991214 NA non-coding upstream 178060 51601853 ~ 51604820 (-)
G990411 NA other downstream 366361 51040780 ~ 51044308 (-)
G989880 LOC106579995 other downstream 786564 50623430 ~ 50624105 (-)
G989343 NA other downstream 1278496 50131329 ~ 50132173 (-)
G989341 NA other downstream 1288853 50120576 ~ 50121816 (-)
G991349 NA other upstream 418273 51842066 ~ 51842522 (-)
ct030 LOC106579885 other upstream 3698717 55122507 ~ 55124484 (-)
adgra2 LOC106579839 other upstream 5266558 56690351 ~ 56787685 (-)
G997269 NA other upstream 5515245 56939038 ~ 56941535 (-)

Expression


Co-expression Network